morexGenes - Barley RNA-seq Database

Contig contig_138251
Source Contig contig_138251
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_138251 (6618 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_138251

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6884	9	2078 bp	MLOC_6884.3	Available	Available	LOC_Os08g36774.1, FRAME:-3, EVALUE:1e-174, 13108.m03864 protein zinc finger family protein, putative, expressed
CDS Structure of MLOC_6884

Contig Sequence (6618 bp)

>contig_138251 6618 assembly3_WGSMorex_rbca.fasta
GCCGTTGACGTCGTACCCTTCCTGAAGGCTCCGTCGCGGCGCTCCCCCTCATGTCGTCTT
GCTCCAGATGAAGACTTGATCTTCGCGGATCGGGCGCTGGCGGCTATCCTTGGTCGTACC
CTTCTTGGAGCGCTTTGGAGGCCCTGGCTTCGTTGTTGTCTGATTCACCTCTCTATTGTT
GTCGGTGGGGTGGGGTGTCGGTGCCCGGCACCTTTGTATCTTGCCTTGGGTGTGTGTGTT
GTGTGCGTTGTTTGGTCTGTGGGATGTATTCGGTGATGGTTGCTTTATAATATAAAGCGG
GGGAAAACCCTTTTTCGATAACATTAAGAAATCCACTGTAGGTCGAAAAAATGTTGTTCG
TCATCACATTTTGTGAACTTATCGTACAGTCCATTTTGTCCCCATGAACAGGAGGAAGCC
AGACTTTGGGCTGTGGCAGGCAGCTGCTGGACTTAGAGTAGTCTCGCCCCCCACCTGGGA
CGTGCATTAGTTCATGTTCTAGGACTGTAAACCACCTCCTAGGAGTGATGTAACCTTAAA
CTCTCTTTTCAATGCAATGAAACCCAAAATCCTTTGTGTTTTCTCAAAAAATGAACTGAA
AAATAATACGTAACATTGCGAACATACCCTCACATATTTTCACAATTAAACCTTCAACTG
TCGTGACAATACCACCCAATGTACCCATTGACAGCTCCAACTCAAGTTCAGGTACTTTCA
AACCGGCCGAATCTGACTGACAAGATCGAAGAGTAACTCAAAATCAAGTAACTTACATAT
CAGATGTTGATCCAAATACACCGAACAGTAATAAAAGCCTGAAGATTCTTTAAAATATTA
AAATCAGCAGACTCGGCCTGTTAGTATGACAGAAAATTCAGCTAAAAGACGCATCAAGGT
TCTTAACTATAGAAGAAACAAGTTAAAATTTTCAACTCCTGAACCAGGAAGAAGTTCAAG
GGCCGCCAATACAAGAAAAGAACAGGATGGATAATCTTATGCACGGGTATTATACACCTT
AAAAACCTGCATGGCTGCATGCGACAGTTGAAGTAATAGAACAAAAGAGTAATTTTCTGA
CCTTTATGACATCACGAGAAAGATCTTCTACGTTCTGCACATGTAACGTAATTTTCTTTC
CTTTAGCCGGAATTTCACCCCCAGGTTTCAACTGATTGACCAAAAAGAAAAGCTTTAGTT
TGAGTTCAGATGTGTTACGAAGAACTTGTGACAGTCAGTTTCTATATGAAGAAAAACAGA
CATGACACTGAAACTGTCCTGTGAGTTGCGATAACCACACAGCTCACATGAAGCTGCCAT
AACAATTACCTCACGGAAATATGGGATTTCTACCAAAGGTCAAGGATCACGTGATTCATC
AAATACAAATTATCTGCAGCGTTACCTCCTCCAGATAGCAAGATTGGTCACACAACACTA
TGGGCCCGTTCGGAGTCCCTCCGCTCCGCGGCTCCGCTCCCGGGACGGACAGAGCTGTAG
TTCAAATTCGTGGAGCGGCTGCACAGGTGCTCCGCAGATTCTTAAATTTTAAAAAGCTGG
TGGATTACCGAACGAGTCCTATATAAGATCTATTTCGGAGATTGATCAAGCAAATAAACA
AGTGTAATAGAACACCACATATAATCGATAAATTAAAAAAAATAGTCCATGTTCAGTGAA
AAGGATACTTGTAGCAAAGAAACGAGTCACACATGCAGCTCCACAGGCTCCACATGTTGA
TGGCAAAGTATCAACCTGTCAAACTGAATTTTGTAAGGCGCAAATTAACTACTCCCTCCG
TTCCAAAACATTTGTCGTGGTTTTAGTTTGAATATTTTGGAACGGAGGGTGTAAATTCTT
GATAACGTCATTGCCAGGCAACTGAACAGACATACCTCTTCTGGTGCTGTATACCTACAC
AGTGCTGAAGCAATTTCATCAGGGTTTCCCTGAGCAATAGCACGACGACCTGCAACAGCT
CCAACTGAACCATGGGGTACCTTTGGCAACCCGCCAGAATTTGCCTCAACTGTTGAAGCA
TTCTGCAAAGGATCTTCGGATTCTCCGGTCGGTGGATCAACAAGAAAACCAAGTGCTGCT
TGTTGTTCAGATGTCCTTTCATAGAAACTCACAGATAACAAAGGATCTGATAAAGGAGCA
TGCCTGTGGATTTATGCGGATTAATAAATATATGTCAAGTTATAAGTGCTTTAAGCATGA
ACAGAGCTAATATACACACATATAAACTATTCTGTGCAACATAAGTCGTCACTCAATTGA
CTACAGGTTGCAAAAATGGTGCAAAGTAGAACCATGTTCTCTCAGTTCCATGACTAGAAC
TACATTATATTATTATAAATAACAAAAAGAGTGCAAAAATGGTAAAAGTGGACGTAAAAA
GTACAACCAAGTATTTCATTTCCATGTCAAAATAAGTCGTAAAATCCGAATCCTAATCTC
AAAAAATGAAGTCTACAACTAATCTTACGGGTTCTCAATGAAGCTGTTTCCAGCAGGATC
ATCAAGAACAAAGGTAAACGCAGCTTCTCCTGATCCGAGAGATCTCAATTTCATTAAAAA
CTGATCAATAGCTTCAGCTTTTTGAGGATCCGCTTTCTGCAGTTCCAAGAAGATGATAAG
CATATCACTAGGTGACTCAATTGAAATTAAATAACTAAGCATACAGGCCCAAAGGTTCAC
CTTTCTTTCATCTTGAAGTGCCTGCAACTCCTCCACAGCTCGCATAATAATCCCTTCCAC
CTAATTTACGATCCAAAATATTTAAAAAACTAGCAATAAATCAAAATGAATTCGAAAGGA
ACCATTTCTTCGGAATTAATATACAAAATTCAATGAAGCATACTGTTGAAAGTGTTCCGC
GTTGAGCTTCCGGAGGAATCTCAAAGTCCAGTTCCGGAATCTGTACGAAGTGAAAAATTA
TAACAGAATCAATGCATTGTATGTATTTAGGATAAATGTATTAACAAGTAGATTAATATC
AATACCTTGATAGTTGCTGAATCAGATTTGACGACCTGACGGTTCAGTACCTGTGCCAAT
ACCGTTTGTTTATCACACTATGAAGATCAAATGTAGAAATAAGACAGATAGAAAGTAACA
TGGGTATGAATTTAAAACTGAAATAATGTCACAACTAAAAATACAATAACGAAACTACAC
GGCACAAGGGGAAAATGCAAAAAGAGTTATGTAGTAATTGTAATAGGAATCACATCAATA
ATGGAACCACACATCACAAGCAAAAGAAAGGGCAAGATATACACCAATACTAGTGAATCA
TAAAGTAACCACAGTTATATAGTAAAAATCTAACATAAACTGCAATACAAATTAACAGGT
GCGAAAGAACAAATTGCACTCTAAGTAAAGCTGTAACTTTATAAATGCAACAGTTCTATC
ATTAGGAGAAATCACCATAGACAAGTTGGAAGTGTACCAGTGTATTCATATATACAAACT
AAAAATAAGTTGGTCCATTATTTATTTCTGATTTTATTACAGCGGTACATGGACGGTAAG
GACCATGTTTCATATAGAAGTGCAAAAACACTATAATCAAACTTTATCTTGTTGGAATTA
TGTGTCCTACAACTATATTCAAAAATTACTTGGGATTGTTAATATCCGGAATACCTCATT
GTGGAATTATACATGGAATTGCATTACATATTTAGCATGGAATTATTACTTGCTGGAACG
TACTTAAGCATTATATGCTTAAGGAAGCTGGTCGATTATCAGTGGAATACAATATATTAT
TTATATTGGAAAGACTACCCGGGTACACTGATGACTAGAAGGAGCAAGATCGTATAGTTA
GATTACAGCACTAACGTTGATCTACATAATTAGAGGTATTTGCACTTTATTATGATGCGT
TGCTCACAAGCGTGTGCTCCGGGGACACAACGGGTAGAATCCGTTAACAGACAAATTTGA
TCGTGGTTGGTCACAAGAGGGTTTAAAGCTCAGTTTCGCACTTCAATTACTTCAAATTTA
CTTCCCCTTTCTGTCTGTGGATACAATATCTATTGGGAACAAATTTGAGGTTCTAACAAC
CATATCCTACTGGAATTGGTAAAAAATATCATGTCACTAAACTAAATAGGTTCACAGTAA
CGGTTGAATCGAGTTATAGGCGCCCCTACAAAAACAGACCTCGTTCTGCCCTTGAGGGAC
GTCCAAGCGGTAGCAACATCCCTTGGGCTGGAGCTGTCCAGCAAACTGGACCTCGTTGTT
CCTAATTCACAAGCACACAAAACTTAAGACACTGAACTTGCATGTGAAGAAATGCCCCGT
AAATTATAGACGAGCATTGCATTACCTTTCACTGCAATGCGGGCATTCGAAAGCCATCAG
AACAACCTGCAGATTCACAAACGCAGCAGATTTACCCCCGTTCTCCGATCAGAATAATCC
TCTTTCGCAACGAGCACAGAGCACGCAGAACCTCACCTCCCGGAAGTTGGGGATCGTAGT
CAGCAGCAACCTCGTGGTGCCCTGATCAGAAGAGAGTACTACGTCTCAGAACATGCGACG
AGTCGAACCGAAACAAACGGAGGAGGGGGGTCAAGGCGCTTACATTTTCGCCGCAGCGCA
TGCAGAGAGACTCGATTTCGTGAAGCGCCTCATCGCCGCCCGCCGACTCCGCAGCGGAGC
GGAGGTCCATCACAACGCGCCCCTCGTCGCCGGAGTTGGCCATGGTCACGGGATGTCGGG
GCCGGGGCGGGTTGGGCTTCTCGCGAAGGAGTGGGTCTCCAGAAGACTCTCGCGGTCTCT
TCTCTTCCCACTGCTTGGTTTGGCGCTCGTGCTCGCGGCGGGAGGGCAAAGAAGTGCGGC
GAGACCTCTGCAGGAGAAAAGAACGGGAGAAAGTAGAGGAACCTAGTACAAGTAGTCTCT
GGAAAGATTTTTTTCTTTTTCTTTTAGGGATGACTCTAGAAAGAAAGAAGTGGGTTTTTT
CACGCATTCTTCATGAAGTAGTCCATCGTTATCTCAAAAAAATAAAATAAAAAATAGTCC
ATCGTTTACACACAAGCAGTGGCGGAGGCAGGGGGTGCTGGCAGGGGTGCTGGCCCCTAT
GCTCTCACAAATACACCTATGTACTCCTAATTTTTCATTTATCAAAATAAATTAGCTAGG
TTTGTATGATTTGGCCTCTTTAAAATCATATGACATGTTTTGACCCCCTCTATATTCAGT
TTCTGGCTCCGTCACTGCACACAAGGGATCAACACCTACCGATCGAACAGTAGACATGTT
TGGTTGGATATGCATGAGGGAAATGGTTGGGTTCGACGCGCTGGTCTTCTCTCTCGCACG
CCTACCTGGTGGACCCTTCCCTTTATCTTGCATCGTGTCCATTGAAGTTTTTCTGTCGTT
GGTTCCAGCATCCGCGGTCATTAATAAAACAATAGAGACAAGTGACACGGGAGTTAAACA
TGGGCACCGCCGCAAAGCGCCCTCCGAGCAACATCGGGTGCGGCGACGCACCTTAATGAC
CGCGGATGCTGGAACCAACGGCAGAAAATTTTCAATGGACAGAGAAAATTGCTATGACCT
GTGACTTGCTTGGGCGAGAGGTGGTAGAAAAGCTTAATCCGGCAGCAGAAAAGCTTCTAT
CGACGGCGCATTTTGCTGCAACCAGTGACTTGTTGGGTTGAGCGGCAGCAGAAAAGCTTC
TATTGGCGGCGCATTTTGCTGCAACCAGTGACTTGTTGGGTTGAGCGGCAGTAGAAAAGC
TTCATCCGGCGGCAGAAAAGCTTCAAACGGCAACGCATTTTGCTGCAACCAGTGATTTGC
TACGTTGAGCGACGGCAGAAAAGCTTCATCCGGCAACAGAAAAGCTTCAAGCGGCAGCCT
GATTTGCTACGACCAGTGACATACTGGGACGAGCGATGGAAGGAAAGCTTCATTCGGTGA
TAGAAAAGCTTCAAGTGACAACGCAATTTGCTGCCACCATTGACGGAAGCTACGAGGTCC
CATGGTGGTGCGGCGACGGGGCAGAAGCGCGGCGAGTACGCTGCAACCAGAGTGGGCCGG
TGTTGCGCCCGGCTACGGCGAGGAAGTACGACGACGTTTTGTGGTGTTTGTTCGTGAGCC
GGTGATGCAGCGGTCGCGAGCTCACCAGTGGCAAGGTGCTGCGAGCAACGGGGGCACAAG
CACGGCGTGCTCTCCGATGGCAAGGTGCTGCGGGCATGGGGCAGTGGCGGGGATGCCGCG
CTGCGTGGCGGGGGATGCATCCCGGCGGACCCTGGGACATGGATGCTGTGTACGGGAGGA
ATTTTTTTGCTTTTGTTCTCGTGAAGATAAGGTGAGAAAAAGAAGATGACGTGTATAATC
ATACGATTGTCGTGGACCAAATCCAACGCCTGCATGGTGATCAGCCGAAAATCGGGCCGG
TACGCCAGCGCAGAGCACCAACCTATTCTTGATGGAATATTTCTGATGGCTCAAACCGTG
TATCTATAAACATCCTTAGATGCTTGTATGAAAGGAAGTACCCATAGGTATGGGAGAACC
AACAGTTACTGAGATAAAAAATGGTGACAAGAATTATCAGGAGAAAGAACATACCTACTT
TGTGCAATCTCCTGGGGA