morexGenes - Barley RNA-seq Database

Contig contig_138200
Source Contig contig_138200
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_138200 (8717 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_138200

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6856	2	1587 bp	MLOC_6856.2	Available	Available	LOC_Os03g10120.2, FRAME:-2, EVALUE:0.0, 13103.m01128 protein proteasome subunit, putative, expressed
MLOC_6855	2	542 bp	AK373549	Not available	Available	None
CDS Structure of MLOC_6856

CDS Structure of MLOC_6855

Contig Sequence (8717 bp)

>contig_138200 8717 assembly3_WGSMorex_rbca.fasta
GAGGGAGGAGGAGGAAGCAGCGAGGAGGGAGCAAGAAGAAGAGGAAGAAAGGCGGAGGAG
GGAGGAGGAAGAAGGCGGCGGAGGCCAAGGCGGAGGAGGCGGTGATGATCCGAGGGAGGA
GGAAATACAGCGGAGGAGGGAGGAGGAAGAAGAAGGCGGAGGACGAGGAGACGATCCGAG
GGAGGAAGAGGAACGGAGGAGGGAGGAGGAAGGAGGCCGTGGCGGGAGAGGCGGAGACGA
CCCGTGGGAAGAGGAGGGAGGCGACTGGGGAGACTCCACCAAGTACCGCGCCGCCATGGC
CACGAACCTGAAGAAGCGCTACCGTGGTCGCAAGGGCTCCGTGTTCCGGAGCGCCTGAAA
ACAAGAACCGTTCCGGTCACCTTGCACGCTCTATGATCTACCCTTTCCCTGCGTACCGCT
GTACTAATAATGGCGGCGATCCTGGTCGCGTGGGTCTGTTGTTCAGTCTACTGTTCTTTT
AGTTTTCTTGCGTCCGTCGTTGTCACTGTGCCTTGCTGTAGCTGGTGTATAGAAGAAGAG
CTTGTGCATTATGCCTACGTATAATAAAATAAAAGGGCTGTTCATCGCTATGCATTGGGT
GCTGACCGCGATTTTTAATTCACAATTGCCAAGTCGACTGATTTTATTTTTTCTTTGACG
CGGAATCGCCGTCCACACACAGCCACACTTACATCATTCTCTTGCCATATAACCCGGCGC
CTACACTCCTCTAACTCCCTTTTGATCTTTTTAATACGCTTTGCCAAATCACCCAAAATG
CTCCTGCTCCAGTCACTTAGCTCTGCCACCACCACTTCCAGACATTCTTGGATATGAATG
GCGCCCCTTGCATGCACAGTCCTCCTCAAGAAGCCATCTGGCCTCAAAGCGTTTCATTGG
ATCTGCCATGTTGCTATGCCACATTGGGCTTCCTCCTTCCAGGTCCAGGATGACCGACCT
ACGATCTGAGTGCAAAGGATCGCTATTCACCACTTTGTATCCTCGAAAACGATTACACCA
AGCAGGAGACGGCACAGCTCTGTCCAACATTTCTCGAATGTACACATCAACTCTGAAATT
ATTATTGCGCCATGTAAAAAATGTCTCCCTCGAAACCAAGGTCTTTGAGATCAAAAAAGG
ATAAAGCATCCCTAAAGTATTGCATACATGATTGGCTTCTCACGCCGCCCTGTTTCTCAT
AATTGAACATAATTTCATTGAATTTGTAATTTGGGTAAGGCGGACGCTAGGAATCACCCG
GCTGATCCGGGCGTGGGATCAGTCGGGCCGGCAGCCACTCGATCTTTCTGCTTGTCCATA
TTATAAGCCGTTCGATCCACCAGTCAAACCTGTTCGATTGATTCCTGTTCGAGGATGGGG
TCGCAGGTACTGCTTCCAGCCTTTCACGGACAGCTACGCACACATGACATAGGCACATAG
CTAAGTGCTTCTTGTTTAGCTAAGCAGCAAAGTCATCTCGTATTAGTTACGTGGCAAGTC
GTCAATTGCCTGATAAAAAATAGCAAGTCATTCATGCTCGACGATGTCACGAGGGGTTAT
CTGAATGTTGCGGCCATAATGTGAGGGCGTGAGCAATGCTGCAACGCTGGACGTCCATCT
CCATGATAGTAGCTCGACCGCTTGGATGGCCGAAAACCTAGCCACTTCAAAGATGTTGCG
ACAACATGCTTCGATGGTCATGGCAACAACGCGATGACATACTTTGACGGTCACAACAAT
GTTGCAATGGCAACCCATATGCTTTGATGATGTTGCGACGACATGCTTTGACGGTTATGA
TGATGCTACACTAATAAGTTGTCTGCTTCAATGATGTTGTGACGGTGTGTTTCGACCACC
GCGACGGTGCTTCAACAACCACGGAGATGATACGATGACTACTCGGGTACTTCAATGATG
TTGCATTGACGTGCTTCGACGGCCGCAAAGGTGCTTCAACAGTCGGCTGCTTTGATGATG
TTGCGATGGCATGCTTTCAACACACGACTATGTCGCGACGAAATGCGACGTCGACGTCCT
TTGAACGATCACATCAATGCTGCAACGACGTGCTTCGATGACCGCGGTGATGCTTCGACA
AATGTCCAATTGCTCTGACGTTTGTTGCAACAACATACTTCCCGATCGTGACAGTGGTGC
TATTTCAATGATGCTACCGACAGCAGCAGCCAGGATGCTCTAATGATGTTGCAGTGGTAC
ATATGTTTCGATGGCCAGGACAGCTGCAGAGGCATCAAGGACGCTACTCTAAGCATTGCT
ATAGGCGTAAAAAATATGGTGTTCTGAAATCATTTTTTAATTTAGAGCTTTGCGCTTCCT
CTTGAAATTGTTGGTGGTATCACGTAGTACATGTGTATGGACGTGCTGAAGTCGTAAAAT
CAGCTGTAGACGGTTAACTCTAGCGGTGGACACCACTGGCTTGACTCGCGACAGAATATC
TAATCTAGCCACATGTTAATCAACAAATCAGATATAAAGAACAAGCAAGCCAGTCAAATT
ACGGATAGATATTTCATGTTCTGTCACCAGCGTCATACTGCAGAACCAGCCCTAGCCTGA
AATCTATTTGCGTTGCGCTGGACCTAATTCTTCCGAGAGATGCGTGAGTGTAGAACCAAT
AATACCCACTGAAAACCAGAGCGCATAACTGGGACGGCATTTTCCACACGAATTTCACAT
GACATGATCGTACAGCAGAATTGGTTCCGAAAGTACTCGTTGCACCTTCAACGGCAAAAC
ATCTGTACAAAATGTGTATCCAGCAGGTTGATCAAAGTTATCACAGGTACCATCGAAACG
ACCGGGTGGACAAATTCCCTCAGACAGGTATCGCGATTCCCTTGCTCGACATGCTGTCAA
GGATGTCGTTCAACGCTTGGCACAGCCCAGCAATCTGCAGGTGGAGAAGTTGTGCAGCCC
AGGTTTAGAAGTTGATGGGTACGTTCTCTAGATAGTTGTTGTAATTACATAGCAAGTGTT
TGTGCACAAGAATTTGTTGTGTAGAGCATGAAGGTAAGTGCAAGTACGCATAAGAAAAGG
TACGCAGAAGAAAAGGTTAAAACTAAGAAGTGCAATGCTACACTACACTAACCTGTTGGT
CCCACTGCTGCAACCCTTCAGTGTCATCCTCAAAGTGTATCACAGCTTCAACCTGTGGAA
CAAAGATGTATGCATAAATTTCAGACTGACAAAACAAATATGTTGTTTAGTAATTCTATT
CCAGAATTTCATGACCTAATGGCAGATAGAGAATGCCAAGAAAGAGAGCTCATAAAATAC
CTGATCAATTGAACCCCGCATTCTATCTTCACAGATCATTCGACATGCTATCTTCTCAGC
CTGCCAGTACAGAGACGTTAATGATAAGAAGGCTCAAAATTTAAATGGTATCCTAGATTA
AGTTCAGAACTCTGCACCCTACATTTGTATAGCAAGTAGAAACCGAAATAAGAACAAGGG
GCTGAGCCTGACAAATGTTTCCATGTTTTGGTTTGTAAATTTAATATGTTCCATTTTTGC
TTTACACAGAGGATTGCAAGTTCCCTTTTACACCACAAGCAATATGGCAGAATATTGCAG
AGTCTAAGTTGCTGGTAGAGTTCAGGGAAATGAAAGAACCAACATATGAACAAAGAATTT
ACCTTTCTAGGGTCAATGCCCAACAATGTTCCAAGCTCCTCAAAACTGGAGAAATGAATT
GATGGTCTGTTAGGTTGAATCCAATAATGAATGCACAACAATATCCACAATACTGACCTG
ATATTGGTGTAAAGTTTACTGGCACTAAGGAGATTATGCTCAATCATCGCCCGGTCAAGC
ACAGTAGACTTGTCTGGCAGAAGGGCTTTCTGTTGAACAGTGGAGAAACTCCAGTCAGGA
ATACCATAAATGGGAACTTATTTTCAACAAGGTACAGATGACTAAAAGTTTCCTTACTTG
ATGCGGCTTCAGCTCCTCTGCAAATGCATCAATTTCTGGTTTCCTCAAAATCCTTTCAAG
AAAAACCTGAATATATGGAAAAAAAAAAGTGGAGACCCTATCAATGAAGAGAACTTATAT
TCAAAACATAATGCCAGGGAAGTATATCAATGTCAGATACCTTCTGCAGTATTGGGTATA
TCTTGAGCTTTGAGCATCTTTCATCCTGGAAGGGGCAAATTATTATACAACAATCATGCG
AAAAAATTGTTTTTGCCACTCTAGTTTTTGCCAATATTCCTTATGCCACTCTAGATTTTG
ACATTTCACTTTTGCCATTCTTAAATTTTGACAAGTATCACAACTACCATTCATGGCAAA
AGCAAACGAATTTTATTTCACTTCTGCCACTCTTAGCTTTTGACAATGTATCACAATTGC
CACTATGAAAATTCTATTTATGCCACAGAATGACAATTGTGATAATTGCCAAAAGCTAAG
AGTGGCAAAAGTGGTTTAGGGGTCATTATGATAAGATGCACAGGAAAACAAAAATATTTG
CACATTATTAAGGTAACCATTATGTTTTGCTTAAGGCAGCATAGCGAAAAGACCAAAAAA
ACTTTCATTCAGCAAAAATAAGATGTATGGGTTGCCTGGTGGAAGATGTTCAACACTAGC
AAAATAATTCCCAAAAAATGTTAAATGTAATTGGTTCACAGGATCATGATATTAGTACAT
TGGAAAAGGTCGTATAACAGCATGTTTTTCGACCTTCGTTGAGTTTAGCGAACAGTAGGT
TTGACGACCCTGGGTTCCCACAAATACAGGATGCAATTCAATTTATTTCACATTATATTG
ATCTTTCAGATAACAGGGGAAAGACAATATGATGAGTGCCAAATTAAAATTGTTTCAAAC
CAAAGAGAAAATAGAGACAAAACGAGGCATCGCAAGCCCACTACGACAGTAAGGTAAAGC
CATAATCAGTGCCCAACCAAACGTGCAACCAGATCTGGTCAACGGCCAATTGGGCAGCTC
ACGAGTCCCATCCAAAGAGCCCCTTAAATACAGAGCTTGTTTACAATCTTGCCCTTATTA
CATACAAACATTTCTTGGTACCCTGCAGGTGCAGGGATCCAAGCCTAGGGCATTAATACC
ACAAGGGCAAAATTGACCACCGAACTCCTAATCCTCCAACATCGTATTTTCTTGTGCTTT
GCGTACACAGCTCCAGCAACATGTATTCGGATTATGGAGGGAGTACTCCCTCCATTCCAG
TGAATAAGGTGCACGCGCAATACGAGGATCAAGTTTGACCGTCAAGTTTAACCAACAAAA
TGTAGGTTATATGCGGCAAAAGTTATACTGTTGAATTTGTATTCAAAAAAGACCAGGGGG
TATATAATTGTAAGTCACATAACTTGCATATTATTGGTCAAATTAATAGTCAATGTTAAA
TCTCAACGAAACTACTCTGCACATGACAATGCATGAACAAATTTTGTGTGATGCCTACTT
TGAACGGTTCTGATTTGCAAAATAATGCAATATAATGGATGAAATCGGAAGGAAATGCGT
GTGTGTGTGGAATGGAGGTGGTAACAACTACCAACTTAAACCAGTGGGACCAAAACTCTA
AATAAATGTCGTGACTTGTGTTGATGGTTTCCAATTGGCAAAACAGGATCAAGAGAGAAC
TAAGACAATCATGATGGTTAGAAGTTACTGCAGCAATTAATGGTAATAGGGTAAATAAAG
AAGGTGTGAAATCACAGGACATTGAGATGAGCTAAAAGCCATACCTTGTACAATGTAGCA
AGAACGCGAGAGCGTTGTGGGCCAGCACCAGCCAATATTGTGCATGTTACAGCAGCACTA
AGAGCTTGCTCAAGAGCATTTTCATCAATCTCTCTGAGAAAATACAGAAACAATGTTCCA
TCGAGATTTGTGAGAATAATACATGGAAGCAATATCAGTTCCAAACACGACTTGCCAATA
ATAACTGCAGTATCTAAGCATGAGTATCAAGTAGAGTAATTTATTTCATACAATGAGCAA
AATATTGAAATATTTGCAAGGGTGTAAAGTAGAAATTAGGCACCACTACATCGGCAAGGC
AACAAAGGACCATACAAGACAGAACATTAAAAGGGAGTAAGCCTTACTCATCCCCAATTT
GGCGTTGCTCAATCTGAGAGATACCATAGTATCGAAGTGCAGCTTCCAAGAATTTACGTT
TTAGATCTAAAATTCTCGCATAGCAGACCTATAATATAAGAGATATAAGAAATGAACTAT
TTTTTTGTCCTTAGTTGTAGACAGATAGATTGTTAATTTGTTTCTGAACCAACAAACCTT
GTATTGTAAGTTCAGAACTTCCTGGTTGCTGTTTGTGACCAAAAACGAGGCTTTGTTGAT
AAAAGCTTCAGCATTCACTGCATCATCATCCTACAAAATGAAGAACTACATTAGTCCAGC
TGACAATGCAATGAGCCAAAGACGACAAATGCTAAACAGCACTAACCTCCAAATAGAGTC
GTGCAATCTGGACGCACTTGGATAATTTGTTTGTGTCATCAAGCATCCTGGTTTTTTAGC
AGATTGTCAGATTTCCCAGAATTGGACAAATCCATTGGCATGTAAAGAAACACAAAAGCT
TGTTTCTACCTGATTCCTGAGTCCAAGTCAATGCCACTAAGCATTTGTGCTGCTCTCGAC
CATTGTTGTTCAGATTCATACAGTTCTGCAAGCTTCTCTCTAATCACTACTACCTGGATA
GATAGACAGAAAATTAGAGATTAAGGTTGTTGCAACACTTATTTACATAATAACAGCATG
GTCAATCATCAATAAAGTAGCACGATGATTTTCTGAAAAAAAACAGGGTCAATCACAAAG
TCACCAAAGAAGATTTAATGAGCGGTTACAAAGCTCACAGAAACAGATAGTAAGTCAGTT
ATTTGTTGTAGAAGAGAGAAACAAATCTAGAGATTCATATTCTCCATGAGATTTACATGA
AGACGCTGGAATAGCACTATAGCAATCAATATAACATAAAATTTACTGGATAATTTCTTT
CACAAGATGACAAGCATGACGAGCCATTCTTTGTACTCCCTGTACTAAATCAGCGACAAT
TAATATGGATCGGATGTAGTACATTTTTTCTGCACAGGTACATATTAACCGGCTTTAATC
TGCATAATCTTTCAATGCTGGGTATTTTGCAAAATGAGCACACTTATTCCATCTTGGTTT
ACTTTGATGGTAGCTACTACCTAGAAATATGAATATCTAAGACCTTTGAGATAATTGCAA
TAAATAGAAGTCATACTACTACTTAACTGCTAATTTTAGTGACTGTTGTCAGCAGCTTAA
CAAAGTTTAAACCCATGAGACATTATAAATTGCAACTTCAACAAGAACTCCCAAAAAAGT
AACACTAAAGAAGTAACCCGTAGATATTTAGATCTCTGAAATGTGATGCATAAGAGGGAC
ATGATGCACCAAGCTATACGTAGATATTTAGGTTTCTGCAATGCAACCAGTATGAACATG
GAATGAGTGGCAACAGTAGTTACTATTGTATTATTTTCTCTACTCACAGACAAGATCATG
AGGTATTATAAAACTATAATCCTTGAGTAATAATTTTCCTGTTCATACCTATTATCGAAG
TATCACGCAGATAATCAAAATAAGTTAACCATGTGGGGTAATAAGCTTAAGGAATTGGCT
CAAATGGTTGATATGTCGCTTATAATGACTGGGCACCAAATCAATAGGTCTTCTTAATGG
ATTACAGGCTAACACGGCATGTAATAGCTGTGTGGTTGACTGCCTGACTGGCATAAATTA
ACTATAGCTCTATTTCCCCTGGAAAGTATGTCACACGGAAATCTAAATTGTAGAGAGCAT
CACCAAAAAATGCATAACATTATCCTCAATACTTGACCTTGCATACACAATCTAAGCTGA
GACTGCATAAATGAGATAACATGATGACATCATTTCATGCACTGCGTATTCCCTTGTAGA
AAAATCAGCCAGAGCCCAAATTGGCCACTCCAAAGCAAATCTCACAAGAACAGAAAATCC
CATCACAGCAATAGCTCCATACGTACTACTAGTAGTTACTGCACAAGTTCAAAATATTCA
GTGGAAGGTGTGACCAACTGTCAAAACAGAAGTGCTGTGCTAGCAATTTCCCAAAATTAT
ATCATGGCATTACATAGTAGCTCTACAGGCTGTGCAGTACAACATACTACAACAAGTACA
GAGCAATCTGGTACTTAAAATTAGCCTGCTAAAGGAACCGAATGGTGCCTACCTGCTCCT
CGAAGGAGACCACACGAGGCTGGATCTGCGTGAGCGCGTAGTGGGCGACCTCCTTCTGAG
AGTCCGGCTCCAGCTTCCCCAGCTCCTGCGCGAACGTCTGCAGCAGCTGCCGCGACACCA
CGAGCGGCACCTCATCCGACACCACTGCGCTCGCAACAATCCCAGCCATTACGCCCAGAA
CGAAAATCAAATAACCAGAAATCTAAGGCTAGGGTTTGAGTGAAGCGCGTTACTGTGGTT
GAGGAAGCGCTTGGCCTGGGGGATGTCCGGCGGGGAAGACGAGATGACGGAGGCGAGGAT
GTGGCGGTACTGCTCGATCTTCTGGCGCTGGTCGGCGATCGCCGCCGCGCTCGCGAGGGC
GCTGTCCATGGCTTCCTCCGCCCGGGCTACCGCGGACCGCCGCCGGGGGTGGGGGGTGGG
GGCGTGAGAACCTCGCA