morexGenes - Barley RNA-seq Database

Contig contig_138167
Source Contig contig_138167
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_138167 (7671 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_138167

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6839	3	2194 bp	MLOC_6839.3	Available	Available	LOC_Os09g30486.1, FRAME:+2, EVALUE:1e-87, 13109.m03058 protein fasciclin domain containing protein, expressed
CDS Structure of MLOC_6839

Contig Sequence (7671 bp)

>contig_138167 7671 assembly3_WGSMorex_rbca.fasta
AATTGAGTTTATAGATCATGTCAATTTTAGTATTTTGGTCATGACAATTCTAGTATTTTG
AACATGGAAAATATTTTTTGTATGAAACATGGCAAATTTTAGTGCATGTATCATGACAAA
TTTAAGTAATTAACCCTGGTAATGTTAGTTTATGGTTCATGGCAAAGTTGAGCCATTGAC
CATGCATTTTTAAAGTAATTCATGACATATTTTTTTTACTTATGAATCATGTCAAAATTA
TTTCATGGATCCTGACAAATATAGTAACTCATAGTGGCAAGTTTAGTTTCTTAATTCCTT
TTTTATAACATGTCAAAAGTTTATTTTAAACGTAGAAGAAAAAGTAATTGAAAATATCAT
GACAACTTCAGTGTAATCATGATGACAATTTATGTGCAAGTGCAATAGACATGACAACTT
TTAACCAAAAAAAAAGTTGTGAAAACATATCGATATGAGATCTAGTTTCGAAGATCTCGT
CGCGATGGATTTACTGATGAAAACAGTTTTTCAATCGGATTTTTTGTTTAAAAATAAAAC
ATTAAAAAAATGAAAAAACAAAAGATTTTTGCTGACATCATCAATTTTATCACTTGTATA
TGGATGCGGTGCCATGTTTTCAATCTGTGATCATAAGGCGTGTGACCGGATGACAACTAC
AATTCATTTTTGTGCGTCATTTCATTGTTAATAGGATCACGCCACAGAAAAAGATTGAGA
GCCGTTAAGAGCATCTCTAACGGGCTCCCTATTTCCCCCAAAAAAACACGTACATAGAAA
GTTGAGGCCAAAAAACTGTTCCAGCAGTCTTCCTATTCCTCAAAAGAATTTGGATCTCTC
CTTAAAAACGCCACATGTCTCCTCAAATAGACGGAGAGTTCAAGTCTTTCTATAATTTTT
TAACCCATGCCACATCAGCGCGTTGCCGTCATTAACAGTTGGACTGTTGCATCGCCGCCA
CTAAACCGTCAAACAATTGCAGTACCGCACCACCACCATTTTATCACTCGCCACCACCAT
GGGAGGGTTTTCGGAGCTTCGTCGATGTCTTTCTTGGACGTGTGAGAGATTTTTTTTTTA
GAAATTAGTCAATTACAGATGAGGCTCATACATCAGGGTAAAATATAGGAAGAGGTTTAT
AGGGAAACTTCTACAGACGCACACCTTTCACATGGAAAAGCCCCTAAACACACATATTGG
GAGAGATTTCTTAGGAGATCACCGGAGATGCTCATAATTTTAGAGAAAGTAGTGGCTGCA
CCCATTAACTAAATGGTAAATAAAAAAAATAAAAATCGAAAACTTGGTGGATGTGATTAT
GAGCAAATTTTACAAGTACCTAAAACATTTGGTCATTATCACAGCCACAAAGTTTCAGTT
TTTTTTAAATGTTTTGCTAAGTTTTTAATTGTGGGTGCACCGTGGGTGCAATGTGCGTGA
GTGCACAAAACCCACTATCTAATTTTATTCTCTTCAGACTTGAATAAAAGAGATGCTCTG
CTACTAATTAGGTAAGAGAAAGAAAGAAAAAGAGATGAAATTAATTAGGTAAAAGGGACG
CTCTGCACCGAGGTAAAAGAGAGCATGGCGAAGGCATGTCTTGCAAGGAAATTAATTAAG
CTCCATTCTTTCTTTATTTATTTTTGCAGGAAAGTTAGCTTCCATTATTCTCATCTTTCT
CTCGTGTGTGGATGGGTGCAGCTGCTGAAAAAATTGAAAAAAAAATGCAAGACGTGGATG
TCTGGCCTGCAAATCTTGTGCTACGTGTTAACCATATTTCTCCGGATTCTACGTCAAGCT
TCTCCCTTTCTCGTGTTCACTCCGGCGGTTCTCCGGTCATGGGTCGCCAATAATCACACC
CCCAGGGACGTCTCCACGGCCAAGCTGAAAGATCCCCCTCTATGCATGTCCTGTTTGCAT
TGCATTGAGCATGAAAAGACCACATTTGTTCTTTACAGTTCGCGTGCACATTCATCATTC
AGTTGTTGTCTACCCACCAATGCAATGCATGTACTCTCTTTGTACTAAATCAGCGGGAAT
TAATATGGATTGGAGGGTGTATAAGATTTTCATCTGATCTTTTAAAATCTTTCAATAACC
CTCTCCATAAAAAAGGAAGTATGGCATTTGCTGGTACCTCACCTAACCATGGATCCTTGA
AACAAAGCCATCAAATGCGATTTGGTGTGATGGGGATGGTCTGAAGAAATGTGATTCCAA
ATCTTCCTGCACCAGACTGCAGAACCGATGGCTGAATACTCAAGTTTGAGGTTGGTCGAA
AGTGCAAGAGGATCAAACCTGAAGTTTCTGCAGGGACAAACAAAAAAGATCAGCCTTCCT
CCTTGTATTCCTAACATACTTGAGGTTAGCTCCAAGCCGTCCTTTAGGTCATTAACCAAC
CACTCGAAACAACCTTCTCATTCTATGCCAAAAGAGTGGTGAAAGATGGTGTCCCCGTGA
TGTTATTGATGACTACTGCCAGTACCACTGTACTAGTACGATCCTTAACGGAACCGCCGA
CGCTGAAGAACTTTGTCTATAACGGAACTCACTAAGAAACTTTTTGATTCACGGGATTCT
AAAAACGCAGGAATAGAGAACAGATAGGATCGAAATTTCATGCTCATCTCAATCCTGCAG
GATCCTAAAACCGCAGAAAAATGGATATCAAAATTCTAAAATGTTCCGTTTTGAAAGAAA
TATCTTTAACAATGCTGTCAAACCCATTGATTGTACAGTTTGTCAATGCTGCACATGTTG
CAAGATTGGGCATGACGAAATGGTGAGAAATCTGATTTTGCTCCAGAGACTAATTGAGCA
AGACAGCTCAAGAAACGAAATTTCCTTTTCATGGATGATTAAGGAGCCGCGACCTACCAA
TGGGCAGCTATTATTATACACGTCACGCAGCCGGAGATGCTTAATCCCACCAGATACAAT
ATGCGTCAGCCCAGCCAAGTGGCCCCCCTCACCGACACTCCGAAATCAGCAGCCCACCCG
GTTGTGAGGTGCTCTTCTTGCAAGGATACCATGCTCTGTTGACCAAAGCTACCAAGAATT
GAGTAGCACATACATCCAGGGAAATATCATATCACATCAAGATGCAAATTACCAATTCAA
CCTTGCAAGTTCACTGGAAAAGGCCTCCAGATAATTTACTGGCGGTAGATTTGCAAAAGC
CAACACAACAGACAGACTACAGGAGTAGTCCTTTTGTTGTTTTGATTTGTAATGCTTTTT
TTTTTTTTTTTGCTCTGTCTGTTTTGTTATGCTTGGCCTTTTGGCTGGTTGTGCTCTTTG
CGCCTTCTTTGGTAACTGATTCTAATATATGAAATGGCGCGCGTTTGGCCGCCTGCTGGA
GGGAGGAAAACAAGGACAGACTATTGTTCAGATTGCAGGTCATCTTTGTGCGAGTATACG
ACGGAATTACGGAAGCTCTTCAATTCTAGTTAATGTTTATTTCATTCTTTTTCTAGAAAG
GCCATCTTCATGGGAACAAGTTAGCTGAATGCAATTTGTCACTGTCATTGGCGAAAGATG
GGTGCTTCCTTTAAGGAAAATGGGTTGGGTGATGGTACTTTGAGTACCATGCAAGTTGGA
AGGATCCTTCTGACAGAAAAGTAGCGTTTTTTGCATTGTTATATTTATATAAACCACGTT
GGAGCCTCACATGAATATCCTTAATACCAACTGGTAGTGTTTAATTAAGGTAATTTTCTA
GTACATGCAAGGTCTAAGCAGACTAAACTACTCATATGTACGGTGATTTCCTCTTAATTC
AAGAGAGTACCGCTCCTGCTGCAAATGTAAGTTTTGCTCTCTGAAAGTCTGAACTTGGAA
TGCATCAGTCATGCCTATTACCAGGAATCTTCTCTGAATTTTTCTGCCTCTGCATGGCAC
ATAGGGGTTAGGGGCACACCATTACTTCTGGTCAACGTAGGGGTCAGAAAAAAAAATGGA
ATTATCTATCCTACATGACAGTTTCCTCGAAAACGATAAAAATATGTAACAAAAATCTTT
TGGGGCCTGATGAATCTTGTGTCAGACGGTGAGTAAAAAACGTTTACATTAGTCAATGGA
ACTTCTTGTGGTTTTGCACATGATCCGCTAAACAAATGCACTAGTGTGCAACTTGAGTTC
TACAGTAGTAGAAGTCAAAGTTTGGCAGGACAAAGAAAATCACACCACCCCAAGGTAATG
ACAACCCCTGGAATGCAGTAACGGGCTTTACAAGAAAAACAGTAACCCAGTTTGCGAGGT
TTCTGACAAAATGAAGAACTGTTAATAAAAAACCCAATCTAGCGCTTACCTCCATACCTT
TTAGAAGAAAAAGGGGGACAAGTTCATAAATATCAGGACAGCATGTGTATGTGTAGAAAG
GGCGAGACAAATACCAGTACCAAGTACTGTCGGAGATCACCGGACGGCTGAATCAAAACG
GCCGTGCATCCATGCTCACTTATGCACCCCTCTGTCCGAAAATACTTGTCATAAGAATGG
ATGTATCTAGATGTATTTTAGTTCTGAATACATTCATTTGTATCCATTAATGCGACAAAT
ATTTGCGGACGGAGGGAGTACTTGTTTGGGAGGAGGACGGAGGACACAATACACAATTGT
ACCAAACATAGTGCAGGAATTAAACCAAACGCGAGGACACCGATTGTACCACCACCACCG
AGAAGCAGTGCGATTTACTCAAGAACAGACCAGAGAACAGACACAGAAAGGAAGCGCAGC
AGCAGCTCCCGTTCCGCACCAACTGACCCGCAACACCAGCTGCCACCCATCACCATATGA
ACCTAATGAATTATTATTATTTAGCCACCTCCTCCTCCTCCTCCTCCTCCCTGCACGAGC
AGGAACACCAACCTTTTATATAGCGTCGCCTCCTCTCGGCAGCACCCTTGCCAGCCTCTC
TTCTTCGCCCGTCCTCACCTTCCCTGCCCTGCTCAGGTTTGCTCCCCCCCTTGAATCCTC
CTCTGCGTTCGCAATGCAACGTCGTTAACTCGTTATGTAATCTCAAACTTCTGTCATGAT
TTCATCTTGTGCAAGTCCATGCCATTCCGTTAGTGTATATAGGATGCATGTGTAGTTTTT
TTCAGAGTTCATGATCCCTGGCCCATGAGATTTCTGCGTTTGGGTCAAACATGATGGCAT
TGCTTTCTCTTCGAGTCGAAGCAGAGATCGTGTGACGCTTGGTCTAGGCAGGCAGAAAGG
TGTTAGAACTTGGTGGTTGGTTCGGGCCTTTTTGTCCTTGTGCTGAGATCTACTACACGG
CTTCCTTTTGTTCAAGCAACTACTCCTACTTTATACTCCTATGGCATCGTGATTTGGTGG
GTGTGACAATTAACTTACTATAATGCGGCGCAATAGCGTAGTAGGTCCTACACTGGATCT
AGTGATCCTGACGCCTGAAATGTTTTTGTTGTGTGTTTTCCCCTACTTTGTCACGATAGT
GAGTGGATGGATCACCGAATGATGTTGAAATTATTGATCTGAATGCTGAAACATACACTC
AAACGGATGACAGATCAAGCAGCAACATGTTGATCACTCAGATCAAAGCACCGCAAAGTA
CTCTACCTCTTCAAAGTATTCATTCAGGTTCAGAGTTGTAACTTGTAACGCTCTCTGAAA
CTCACTGCATCATCTCAGGGGAATTGGATCAGGGAAGAAGAGAAGGCAAGCAAGCGGTCG
TGACCATGGAGTTCAAAGCGGCCGTTTTCACCGCCGCCGCGCTGGCCGTCCTCCTCTGCT
CCCCGGCATCGGCCCAGAAGAGCCCGCCCGCTCCGGCGCCGGTGTCGGTGTCGATTCCGC
CGTCCCTCGCGCCGGCGCCGGCGCCGGCCCCGCGCTACGTGGACCTCGCGGCGCTCCTGG
ACGTGGCCGGCCCGTTCCACACCTTCCTGACCTACCTGCAGAAGACGAACGTGATCGAGA
CCTTCCAGCGCCAGGCCAACAAGACCGACGAGGGCATCACCATCTTCGTCCCCAAGGACT
CGGCGTTCGCCGCGCTCAAGAAGTCCACCTTCTCCAACCTCACCGGCGACCAGCTCAAGA
CGCTGCTCCTCTACCACGCCTTCCCCAAGTACTACCCGCTGGCGCAGTTCAGGAACCTCA
GCGTGCTCAACCCGGTGGACACCTTCGCCGGCTCGCCCTACACGCTCAACCTCACCGACG
ACATGGGCACCATCACCGTCGAGTCCATGTGGTCCAAGCCCAAGATCTCCAGCAGCGTCT
ACGCCACCAAGCCCATCGCCGTCTACTCCATCAACAAGGTGCTCCTGCCCATGCAGCTCT
TCAGCAAGGACCCGCCGCTGGCGCCGGCGCCCGCGCCCGCGCCGGAGTCAGGGGCGTCGG
ACATCGCCCCCAGCCCGGGCGGCGCCAAAGCGGGCGCCGGGAACGGCAAGGCGGACTCGA
CGAGCGCCGGGTATGTCGGCGCTGCGAATTGCTTGGGGCTGCTGGCTGCCGCGGCAGGTG
GCTTGATGCTCCTGTGGTGAGAGAGAAGGGAACACGTCGATGGTTCTTGTCATTTGTAAG
CACTTGAATTTGATTTTGAGCTGGTTGATGGGAGTCATTCTTTTGGACATAGTAGGCATG
ATGTTAGGATTGAATCCGAGTATTTTACATCATATTGGTCGTCTCATAATCATGATCATT
ACTCATAAATTGATGGACGGATGACTATCAAAAGAGGTTTAGTCACCTTTGTGACTAGTG
CTTCTCCTGTTTGTGGTACTCTGCTAAAGCTGTTCGACCCTGCCTTAGGCTTAAAGGCGC
AACCCTGGTCGGCACCTCTCACATGCAGCACGCATGTACGCATTCTCATATTTCCTAAAT
ACGGAGTATAAGTCTTTTAAGAGGTTTCACTAGGGGTACTACATACGGATGTATATAGAC
ATATTTTAAAATACATATTCACTCATTTTGCTTCGTATGTAGCCCTCTGGTGAAATTCAA
AAAAAAACTTATATTTAGGACCTGTTCGGATCCACTCCACTCCACAAACTCCGCTCCGGG
AGCGGGAGGAGCGCGCCGAACGCTGCAACTCCACGGAGTCAAAAGAGTGGACGCCAGTCA
CTCGTACTACAGCGGACAAAGGTCACCGGCAAACGACCGTTCCCGGAGCCGATCCCAGTC
ATATTTGCCGGAGTCGCTAAAGTCCGACTCCCCGCGACTCCGTCCTCAAAATATACCTGT
TCGATCCCCTTCATCCTCCCCAAAACAACTCGCGACATGGAATCCTAGCTCTCTTCCGCC
GCTACCCCTGCCGCTAGATCTTGCAATCTCCTCGTCTGGTCGTCCCCCTCCTCGCCATCT
CCTCGTCCCCCTCCTCAAGCGGTTGCGACCTCGCCATCTCCTCGCCCCCCTCCTCAAGGC
GGTTGCGACCTCGGCATCTCCTCGCCCACCCCCTCAAGGCGGCTGCGACCTCGGCCTCCA
GCGGCTGCGACCTCGGCATCTCCTCGCCCACCCCCTCAAGGCGGCTGCGACCTCGGCCTC
TGGCGGCTGAGATCAACAGGGCCTCATCCTCGTCCCCGGCAGCTTGGATTCATCGTCAGC
AAAGTCTGCATCCAGGCCCACGTCACATCCAGCAAGGTGAGATCCATATCTCCTCACTGC
ACCCTTGTCCCTCTATCTGTTCTTCATTCATATCCCTGATTAGTTGTATAT