Map Locations of contig_138165 (6207 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_138165

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_6838 1 1393 bp AK362698 Available Available None





CDS Structure of MLOC_6838






Contig Sequence (6207 bp)

>contig_138165 6207 assembly3_WGSMorex_rbca.fasta
TGTGTCATGCATGCCAATAAATAAGGTCATCTATGATATTAGTTTATGATACTATGCAAT
ATGAAAGTAGTATCATACAATAGTATCATNNNNNNNNNNNNNNNNNNNNNTACTCCCCAC
TATGACCAGCCTTAGTTACTTCCTAAATTACGGTCCTGTTTGGGACCGCTTTGCTTCATT
ATAAACAGTTCCGCTCCACCAAATTCACTTTGAAGCAGTTTTATACGAAAGTTGTAGCTC
TTCCAAAAAGAATGTTTGGCTTTTATCCAGCTCCATCTTCACGAATGGAAATTTTGATAG
AAATGATCTATTTGATTGGATGAGGGGGGAGAAACGAAGGGGTATCCACTTACTGGTGGC
AGTGGTGGGTAATTTCACTCCAACTCCAACTTCTATAATTTTATGGAGCACCTCCTAGAA
AGCTTCATAAAAAACAAAAAGTTGGAACCCAAATTTCTAGTTTTTTTGTGAAGTTGTATA
TCATAAAGATATCCCGTTTGGCTTATGTTTTCTAGAGCGAAGCTAAATTTTCTGGAGTAG
AACAGTCCCAAACAAGCCCTACAACTCCACGTCGCTCCGCTCCGATCCGGAGCTGCAGAG
CGGAGGGAGTCCGAACCGGCTCTAAATACATCGCAAGCCTCTAGTACTATGCAGGAAGGC
AGAACCACTTTTTAATCTTCATTCATAAAATTGAATAATGTTTTCATGAACAAATTTCGA
AACACAAATAAACTGTTAAAAGGTGAATAATTATTGAAACATGAACAAAAATGTATTGAT
TTCATATATATGACAAACGATTTTAAATATACATTGAACACTTTTGAGATATATGATGAA
CAATTTGGAACTACACAATAAACATTTGTGTGATATAGACTGAACAAAATTTAAAATGTA
TTGAACATTCTTTTAATACATGATGAACATGTTTGAAAACAATATGAATATATGTATTGA
ACATTTATTAATATACAGTGAACATTTTTTAATACGCGTTGAACAAATTCGTATACGTAT
TGAACATTTTAGTAATATTTGATGAACAGTTTTGAAAAAAATATGAATATATGCATTGAA
TATTTTTTTAATACACACTGAACATTTTGTAATATGCGTTGAAAAATTTCGAATACACAT
AGAAACTTTTTGTAACATGCATTTAACAAATTTAAAAACACAGTGAATAGATATTCATCA
AACAATTTCTATTATACGATGAAGATTTTTATAATGCATGAGAAATTTTGTTAAATACTG
TGAACATTTACTTAACATACCGTGAACATTTATATAACACAGAATACTTTGTATAATATA
GGGGGAAATAGAAGAAAATAAATAGGAACATAAAAAAAGAAAACGAAAACGAAAAAAGAA
AGGACAGAAAAGAAACAGAGAGTGAAGAAGCAGCGAAGCAACAGTGGGTCGGCCCAAAAG
GGGGCATCACAAGGCGAAGCTTCAGCGGAGGGATGCAATTTTGATACACATGAGCGCGCT
TCACGCCTGATCCCCGCAGGAGGGACTGGGCGGACCTCTCTGTTAGCAGCCTAGGTCCAG
CTCCCAGTCCATCGACATATATTCGGACATTTTTAATGTGCATCGAACACTTCACTACAA
GTGAAGAGCCCACAACATTTCAAAAGACCGGTCTGAAGGGAGTGTGGCACCCTCCCTTAT
AAAGAGCTTCTAGCCTCTTTTATATTCGAGATGGGACTAAAGTCACTAGCACTGTCCAAG
GTCAGGTTCCCGACAGCGCATCATAGCTTAAATGGTTAGGGTTTTTGTGGTGGAACCAGC
CCGCCAAGTTTAAATCCAAGACTTGCACGGATGTGTGCATTTTTCTGAATTTATTCTAGA
CTTTCTGACGATGTTTTTTCAGTGGAAGAGTATGTTTCCATCGACTATGAGGCGTCTATT
ATGACGTTATCAATCTCAAGATTTGCTAGCTTGGTCTCTCGAACGTGTTCACAAGGATAG
GATATGTGAGAATCTGCATTTGTGCTGTGTTTTAAGAAAAATAAAAAGAAATGAGTTCAC
CCTTTGTGATGATTTGTGCGGTAAGTGTGCTTATGTTATGCTACCTCCTTTTCGGTTTAA
TAAGCCTTGTACGTATCTCTAGGTTAATAAATAAACCAATGTAATTCAAGTTATGTAACA
CAAAAAATATCATTAAAAACTTCAAATCATATATTCCCTCCGTAAACTAATATAAGAGCG
TTCAGATCATTACTTTAATGATCTAAACACTCCTATATTAGTTTATAGATGGAGTATTTT
TTAATGGTATAATTTTTAGACAATACAACTCATCTTATATTAATCAAAATATAGATCTAG
GGATATGCACAAGTCTTATAAACTGAAAAGGAGATACTCCCTCTGTAAACTGGTATAAGA
GTGTTTATATTTCCTTCGTCTGAAATTACTTATCGTAAAAATGAATAGAAATAGATGTAT
CTAGAACTTAAATACATCTAGATATACCAATTTCTCCGACAAGTGACGGAGCAAGTACTA
TTCAAGCATCTACACAATGTGTCGTACTTTGAGAGTATATCCTGGATATTTAGCGACAAG
TTGAGGTGTACTCCTTTTGACATTTGTACCTGAAGTTGTTAAGCATATGTGGTATGTGCA
GTTGGGCCAAGCCTACAATAATCAGGGTGTCTGTTTCCCTCCCGGAGGCTCGACTTTCTC
TTGCAATCGCGTGTTGGGTGTCTCTTACATTCTATGAATTCTATGTATCAGGACAAGAAG
CTTTTTGTGTTTTATCTAGAAACTGGTTCTTGGCCGTTCTCACTTCCCTTATGAGTAAAA
TTTGCTGAATTATATCTGTAGCCCTCTTGCGTTAAGAGTTTATCAGCCTCATTATTAGGT
ACTAATATGTGCTACTCCCTCCGTCCCATATATTATTGGACGGAGGGAGTATTTCACAGC
CTCTATTCAAGAGTTAGTGTTGGATTCCTTTGGTAACATTGTTCATGAATGTGCTGCCTT
TTCCTTGAAATTAGCAAGAATTTCCATACAAAATATCATGAAGTACGCACAGAACATGTA
TATGCCCTCTAAAGATCTGAATGAATAACAATCTACAATATAGTATTGCACTTCATCCAT
GAACAGCCAGGGCAGGTGCTTAAATTCGGCTTCAGACAAAACACCCCAAGGAATTATAAG
AACAAAGGTTACATGCTTCATTTCACGCATCATGAGATGCAGAAGCTTATGAATTACATG
GAAAGTCTTATGATCCTCTCAAAAATAATGTTTGGTAATTTTACACCATCACAAGAATCA
TCCCATGTGTGTGTTCTGCCTTTTCCTGACATTGTCTCATAGCAGAGCGAATTATAGATA
GCTGAACAATTGCCATCCTAGTAAACCTCAACGTGCCATTGCTTGTTCTTCTTGAGCTGC
GATAGTTTCTGATCCCAGCTCTCCCCTCTCTGCTCTGCCACCTTCTTGAGCGTATCCTGA
ATCCCTGGCATCATTCCTTTCAAACCACAGAAGTAGATGTGTGCGCCTCCATCCAAAAGC
TTGAAAATCTCGTCGCTGTACTCTTCAATCTTGTCCTGAACGTACATCTTGCCACCACTC
TTGTTCTTCTGCTCCCTACTTAGTGCTTTGTCAAACCTACAGATTCAACAGACACAATTA
TATTCTACTTAAGTAGTTTATTAAAGTGGTGGCATGCCCAATATAAATAATATTCTACAA
TGACAGAAGCATGTAGGTCAATAACAAAATGCCGTTTGGGATAATAACAGAAGCAGGGTA
TGCAGATGGAAGAGGTCAGTAACCTGAAATTGTCTGGATACTGCTTAAGGTAGCTTGTGA
ACTCTTCGTCATAGAGAAGGCTGTCCGAATTAGCCACACCAAGGAAGAGCCAAGCCAGGC
CACCAAATCTGTAATTTGGGACATCTTCCATGAACATGCGGCGCAGGTACCCGCGGTAGG
GAGCAACACCAGTGCCAGTGGCAATCATGATATGGGTTGCATTTGGATCGCTCTCAGGTA
GAAGCATTATTTTGCCAGAGGGTCCTGGGGTCAGAAAGAAATGAGAGTGAGATGGATAGA
CTTTAGAAGAACTACTATGAGTATACAGAATTCTACAGGAAATAGTATGTGCATACATGT
TGGGTTTGTATCACGGTACAGGAAGCAGAACATTGTTGAAAGGACATTTCTTATACGCAA
AATTAGATTTTTATCCAAAAAAGTAACAAGTACAACAAAACTGGTAGAATAGATCTAGTT
GGCAGCAGGACAGAAAGAAGATAGCCATATTAGTGTCAGCGGTAGCCATACTGTAAGAGG
CTCTTGGATACATAGAATTTGTTATTTGTCTGGCTAGTGCATAAGAAGTACTCCGTCCAT
TCCTAAATATAACTCTTTTTAAAGATTCCACTACGGAGTACATACGGAGATTGACTTATT
TTGCTCCGTATGTAGTCCGTNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGAACGGAGGG
AGTAGATCTTAGTCAGAATGTACACTGTAAAACCAGTGGCACTGTGAAAAACTCCCCTCT
TTCTTAATGTTTTGGAAGAATGGTTACTCCCTGCTACTTCTTAATTGACATCCTACGCGA
TGTGTATATACTACTCCTATGTACTAACGCCCTTTTTGCCTAAGGATTCAGAAATAGATG
GTTTCACGCAAATGAACTTTAGGAAAATTTAACCGAGAAAACTTAGTCCTTTTAGAGTTA
GAGGCAGTCATATAACACTGCTAACACACAGGAAAGCCTTTACATCCATCAACTAAAAGA
AATTAACTGACCTGTCAGCTGAATCTTGTCCCCAGGCTTTGAGTTGCATAAGAAATTACT
GCAGACACCATTCTTCGAGGGGTCCTCCTTGCCAGTTTCAGGATCATAATAAACTGCACG
GCGAACACATAAACTAGCCGTCTTTCCATCAAACGAATCCCCATACCTAGTAGATGCAAT
TGAATACAGACGGACATTCTGTGGGTTTCCAGGCTTCTTTGGGTTCTCTCCCTGGCAGAC
ACACACAAGGTTAAGTGAGCGATGATTATGGATGGTGAAAATATGGACGAAAGCAAATGT
AGTGAACATATATTTGATACTTGAGTTAATCTAAAGCAATTCTCCTATAAAAAGCGTCAA
GCAGCATACTCAAATCGATGTCTATAAATATGGACATAATTAAAGTACAGCATAACTTGC
CAAGACTCCCTTGTTCAGCATTCAGTAAGACAGACGGAGGAAGAAACAGAGAATGCTGGA
AAGGACTAGACGCTCACCGGAGGAATGATCCCATAGCTCTGCCCCTCCCAGTACGGCACA
TTACCACCATGGTCGATGACGACGTGGCATGTCTCCCCCGGAGCGTTTGGCCCTACCGCC
CGCTCAACCGAGACGATGGTGGCCGTGTAAGGGCCCTTGGGCTTGTAGGTGTTGAGCGGC
GGCTCCTTGGCGCTCTCCAGGTCGAGGGGCGCGACGGAGACCTTGCTCTTGCTCGACTGC
TGGACGGCCCTGCAGACATGCCTCTGTTGCAGCGCGGCCTTGCCGTCGCACGCCAATGCG
GTGCCGATCCATGACTTGTTGCCGAAGCTGAGACTGTTGGTGCCCTGAAGCGTAACCAAA
GGTGGAAATTAGCATAGTGTTGGTGCCCTGAAGCATGACCAAAGGTGGAAATTAGCATAG
TGTGCTGTGAGCACAGTCTGACAAGGCTGTGAGCTGAGGATGCACAGGATAGCAAAGCAA
TCCTGAAGTACTAGTATGACTGAATGTAATGCTACTACTATGCGCGTCTGTTGGTAAGAC
ATATATATCTCTGCAATCCAGATGTATAGTATTAGTAGTAAGAAGTAAGCCACTGTTGCA
GCTAGCGCTATCGAATCTGCCTAAAACTGCTCCCTGCTCGAACCAATCTGCCAATTGTAC
TAGTACCATCTAAGAGCGCAGTAACACACGATTCAATCACCATCACCTTGATTCCGGAGC
TCCTGACGGCGCGGTCCGAGCCGGCGACGGGCGCGGAGAAAGCCACCTGCAGAGAGGGGT
AAAAAAGAAAAAGTCAGCAGCCGCCGAGCAGGAGCCTGACGGGATATGGATGCGGCGCGG
ACGTACCTGGGACGCAGCGGCGGTGGCCATGGCCGACGGACGGATGGTTCGAGGAAGGGG
AGGGGGGGGAGGAGGGGTTTTGATCTG