| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_138022
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_6737 |
2 |
1452 bp |
MLOC_6737.1 |
Available |
Available |
LOC_Os07g05470.1, FRAME:+2, EVALUE:1e-53, 13107.m00501 protein AIR9 protein, putative, expressed |
| MLOC_6739 |
1 |
372 bp |
MLOC_6739.1 |
Available |
Available |
None |
| MLOC_6738 |
1 |
796 bp |
MLOC_6738.1 |
Available |
Available |
LOC_Os07g05480.1, FRAME:+3, EVALUE:9e-77, 13107.m00503 protein photosystem I reaction center subunit, chloroplast precursor, putative, expressed |
CDS Structure of MLOC_6737
CDS Structure of MLOC_6739
CDS Structure of MLOC_6738
Contig Sequence (5118 bp)
>contig_138022 5118 assembly3_WGSMorex_rbca.fasta
TTTCCATTACTTTCATAACGGAAATACAATGTTTTTGAAACCAGAACCAGAAAGAGAGGG
AAAGGGAAAAAAGCGAGTTCGGAACAATATCAGGAAACCCACCGTTTATGCCTGTCATCC
TGTAGTCCAGAGCTAACATGAATAGTTTAATCTCTGATTGACAAACTGTTAAAATCAGTT
AGTTTCCAATTCACTATTGTCACTGAAGAGTTGTGAACTCTTCCCACTAAATTCCGAGTC
TCAGAAAGATTCCATGGCAATGATTATTTGTGCTCTCGGGAGCGCATGCTCTCTTTATTT
CAGAAAATTCAAAAACTGACTTGAGAAGGTTTCAAAGCAACCCCCAAAAATCTGGTGCGT
AGATATTAGAGGAGCCATGTGCCAGCAAATTTTGTGTGTGGAAAATTCATTGATTTGGGG
TCTGAGTGAAAGAAAAAAAAAACAAAGTCGGGAGCTAGAATAGCATTTTCATGTTTTTCT
GAAAATGCCTGGGTTTGTTTTTCCCCACAGCTAGCAAATGAATTGTGTTTTTCACGGAAC
ATGCAATCTGAAAACAAACTTGGTTCATTTGTATGTGAGATTTTCTTTGGATTTTTTTCT
TTTTTGAAAAGGGAGCCCAGTAAGGAGTTTTCGTTATTTCAGTCACTACTAACTATTTTA
AATATAATAGCGTTACGATGTTTGCTATCTTCAAAATAATGATATACCTTGTGTCGCCTT
GGTGAAATTTTATTCTTTGTTTACTGACTAGAGTGCATCAACTTTGCATTAAACAGGTTT
TGTGTGACAAGGACCGAACACCAAAAAAGGTATTTCCCCAAACTTTTGATGTCTTGACAC
ATCGGAAGCTCACCAGCATACCTAGATATTCAAGTATACCTATCTTACCCAAAAAATCAA
TAAAATACGAACAGGCACAAGTGATGGGACATTTGGAGCGGAGAATTTTGGAAGTCAACA
GAAAGAGAATAAAAGTTGTAAAGCCGGGATCCAAGACATCATTTGCAACAACTGAAGCCC
GAGGGACATACACTCCCCCATTCCATGTAAGTTGTTAGCATGAATTGGATAGATATATGC
AATCTGGTATTGGTAATATGTACTCCTTTTTCTTTAGCAATATGCTAACATTTATTTGAG
GTTTGCAGGTTGAGCTATATCGTAACGATCAGCACCGTTTCAAGATTGTCGTTGACGGTG
ATGACGAAGTTGACTTGATGGTTCAAACGCGGCATATGCGAGATCTTGTCATTCTGGTGA
TCAGGGGCCTCGCCCAGAAGTTCAACAGCACCTCCCTCAACTCGCTTCTCAGGATAGAGG
CGTGAAAACATGATATACCTGACAATGTAAACCAATGAGGAACGTATGTTGTTCAATACC
GGTGTTGTAATTTGTTGGTTTGTAGTGCGTATTTTGTAGGATTTGTAGCGTGTCAGCTTG
TGTGTGATCCTTTTGTTCTTGTAAAGAACCAACACACAAGAGCTAATAGTGGCCCTTGTG
ACTTTGGTTTTTTACATGTCTCATGAAATGTACATAGGGTTTTCAGAGTGGGAGAGTGGT
GTTGTATTCAAATACAGCTTGCGCATGCCGTTATAATATCAGGTCATATTGTTGATGATC
AGTCATTCCTTATTATCACAGTGATGTCAGGGTGGGTATTCAGCGTGCTCTGAATTACTA
CCGTTATGGTGTAACCTTACAACTTGAAGATGCATCACACTTTATTTTCATTGGCAGATT
AGTGCATACTACGTAAAACTGTTATTTTTTGAATTTGCAGGTTGCAAATATAGTTTTTTA
TTTATTTAACATAAACGAAAAGAGCTGTTATTTTACTGAACTGTTTCCATGCTGGTGATG
CTTGTCAGTCGCCACGTCAGCGAAACATGTATAGCATCAGAATATCAGATGGAGAAGAGC
TAGCCACGGCAGTGTATCTTATCCGAACTGGCAGGCACTCCCTAACCAGGGGGCGCCACG
TCGGTGGCAAGGATCCGAAACCTATCCTCGAGCGGCCGCCGCTCGCCACGCGATTCCCCG
TGTGGCCCCCGCTCCACAAGATTTAAGAAAGGAACTCGTTGAGCATTGCACCTGAGCAAT
CGCAGCATCCACAGCGCAGAAATCCGCAGCCATGGCTTCCCAGCTCTCCGCCATGACCTC
CGTGCCGCAGTTCCACGGCCTCAGGACCTACTCCTCGCCCAGGTCCATGGCGACGCTGCC
GTCCTTGAGGAGGAGGAGGTCCCAGGGCATCCGCTGCGACTACATCGGCTCCTCCACCAA
CCTCGTAAGATCACACTCATACTAGAGGGGGTACATGCGAATGAGTCGGTCATCGATTGG
TTGGTTGCTTGACATAATAACTAATACTATATGCGGATGCAGATCATGGTGACGACGACG
ACCCTGATGCTCTTCGCCGGGCGGTTCGGGCTGGCGCCGTCGGCGAACAGGAAGGCGACG
GCGGGGCTCAAGCTGGAGGCGCGCGAGTCCGGGCTGCAGACGGGCGACCCGGCCGGTTTC
ACGCTCGCCGACACGCTCGCATGCGGCGCCGTTGGCCACATCATGGGCGTCGGCATCGTG
CTCGGCCTCAAGAACACCGGCGTCCTCGACCAGATCATCGGCTAGAATAACCCTTCCTTT
TCCCTCCATAGCTGTTCTGCATCCATCGGGCGCTCCATCTAGTGGATCAACTAATGCTCC
CTTCGTAATTTGATCATGTGAATGTATGTGTATGCATCTTTGTTTCAGCGGGACGTACCG
CCGCGCCGGTGTGGCAACTGCTTCATCCCATGCGTTTTTTCACCATCTATAGTAGACTAT
TACTCCCTCTGTAAATTAACATAAAAACATTTAAATCATTAAAATAGCGATCTAAACATT
TTATATTAATTTACAGAGGGAGTATCTTCTAGATGGTGAAGATCCGCTCGTGCTATTGAA
AAAGCAACACATAGTCCGATAACTAAATTAGTAACAAACTAACAATAAGAGCATTCTCAA
AAAAACAAGCAAACAAACAAAAAAAATAAGACCGCAAAACAACCCCGTGTCGCCACCTAA
ATTTCACGGTGGGCTGGACATCCTTAATACTTTCATTATGAACAAGTGGTGGTGGAGAAT
CCTAACTTCGGGTCCTGGCTCTATGTGATGCTCCCTTTTCAAAGGTATTTTTTTCTTAAT
TACTGTCCTTTATTGCCTCTTTCTTGGGTGGGTCCTGTAAGATTGAATCGACGAAGCCTT
CCTACTCCTAGAGGGAGCCGTGTAATGTTTATTTATATTGAGACGAGAAGCCCTCGTCGT
AGCTATTTATATTGAGACGAGAAGCCCTCGTCGTGGCTTAGAAGAAAGAATCGACCGATC
TCCTGATCGGATCGTTACAAGGAGTCCTGTTAGGAAACATGAACGGGAGGAGGTTGAGAT
TACAATGAGAGTCCAATATCAATACGTTTAACACCCTTCCTTAATCTCAACTATCCTACA
TTAAGATTTTTCTTAAACTTCCCGAATGGCTTGAATGGTAAGGCTTTAGTAAAACCATCT
GCTACCTGATCTCTTGAAGGAATGAACCGTATATTCAACTTCTTTTCTGCAACTCTTTCA
CGCACAAAATGAAAGTCAACCTCAATGTGTTTCCTGGGCATATCCCGGGCCGGGCCGGGC
TTTACAAAGCCCGAAGTGGAAATCTCAAGCCCGAGCCCGGCCAAAAAAACGTAAAATCAG
GCCCGAGCCCGGCCCGAATGGGCATAAAAGGTGAATTTCGGGTCGGGGCGGCCCCCCGTG
TATATCACCTATTTTGCAAGCCCGAGCCCGGCCTGAACTGCTTTCCGGGCCCGATTTTCA
AGCCCGAGACCGACCCGGCCCGACCCGAGGTTTTCGGGCCGGGCTGCCCATGCCCAAATG
TAGGTTCTACCATCAAACACTGGATTAGCAAAAAGATAAGTTGCTCCCAAGTTATCACAC
CATAGACAAGATATACAGTGTTGCTGGATTCCTAACTCATGAAGCAATGACTCCAACCAG
ATAATATCAGCAGTTGCATTTGCTCGTGATTTGTACTCAGCCTCTGTACTTGATCTTGAT
ACCGTGGCTTGTTTTCTAGCACTCCAAGAGATAAGGTTTGAACCAAAGAACACTGCAAAT
CCTCGAGCTGATTTTCTGTCATCACTACAACCTGCCGAGTCGGCATCAGAAAAGGCACTA
ACAAATGTAGAACTAGAACGTCTCAGCTGAAGTCCCAAACTCACAGTGTGTTTGATATAA
CACACAATTCTTTTGACAGACGTACAATGAATGGACGTAGGGGCATGCAAATATTGGCAA
ACCTTGTTTACAGCAAATGATATGTCTGGTCGTGTCATGGTCAAGTACTGTAGAGCTCCA
ACAACACTCCTATATTTTGTGCTCTCCTCTTCATTAAGCGGTTCTCCTTGATATGGTGAA
AGTTGTTCAGAAGAAGACAATTGTGTAGGTGAAGGTTTGCAATCCTTCATTCCCATACGA
GTTAGAAGTTCGGTGGCATTTTTTCCCGATTCAGTACTATGCCATCCGAAGTCTTCCTAA
CTTCAATGCCTAAGAAAAAATATAAATCACCAAGATCCTTCAAAGCAAACTCTAAACTTA
AATCATGCAAGAGAGCATTAGTGGCATCTTGTGAGGAGCTTGCAACTATGATGTCATCAA
CGTATATCAGCACAAAAATCACTTTGTTTGCCTTATTATAAATAAGGAGAGATGTATCTG
CTTTGGATGGAACAAACCCAAGATGCTTCAACTGTGAACTTAACCTTGAGAACCATGCTG
TAGGTGACTGCTTTATTCCATAAAGTGCCTTGTCAAGTTTGCAAACATAGTGAGGTGTTT
TTTGGTTTTCATACACTCGTGGTTGCCTAATATAGTCCTCCTCTTCGAGAACACCATGCA
AAAATGAGTTCTGAACATCTAGCTGTCTAAGACTCCATCCTCTAGACACAGCAATGGCAA
GCATAAGTCTTATAGTAGCAGCTTTAACAACAGGGTTAAAGGTGTAACGACTAAGATGCG
GTNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTGGAAAGAAGCGCATCTAACCGTTTCG
CAAACATGGTAACATAGC
