morexGenes - Barley RNA-seq Database

Contig contig_137933
Source Contig contig_137933
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_137933 (7617 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_137933

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6694	2	3643 bp	MLOC_6694.2	Available	Available	LOC_Os08g01054.2, FRAME:-1, EVALUE:8e-45, 13108.m00006 protein retrotransposon protein, putative, unclassified, expressed
CDS Structure of MLOC_6694

Contig Sequence (7617 bp)

>contig_137933 7617 assembly3_WGSMorex_rbca.fasta
GGCGGCTTATATAGCCGCGGGCGGGCAGCACACGGAGCGGCACTGTGTGAACGTGTGGCA
GGAGCGTATGTGGAGTGCGTCGCCGCGCCTTCACTGCATCGCCCGTGAAGAATCAACAGA
AGGTTGACTGACGGCGCAACCTTCACATTGATTCCCGCAGGAAACTAGACGATGAGGAAA
CTAGACGATGAGGACGACGACCGTGCGCCAGTCGCTGACTCGGCGAGTCCACAGTTGTTT
CGCGCCAAAAACGTTTCCGCCAACACCCCCAGCGCGATGGATTCAGCATGGGACCGCCGG
GGCCAATTTTGGTCCTAAACGACAAAAAAGGGCTCCTAGGGATGCGACTGGACCGCCGGC
GAAAAAAAAATGGCCTGAAGGGGGCGTGGCTGGAGATGCTCTAATACTCCCTCGGTAACT
TAATATAAGACGTTTTTTACACTATGACAGCGTCAAAAAACATCTTATATTATGTTATTA
AGGTAGTAAATCTAGAACAATTTGTTTTGTGCTGCAACTAGCTATATTCAATTAAATTAA
AACAACTTATGATCAAGTGCCACTTAACATTGCATTAGTACTAGCACATCTGCCGAGGGG
CACATCCACAAAAAAGTTAGCAGAACACCTTAGCACTAGATGATAATTTGCTACAAGTGT
CTAGAACAGCAAACACAAGCTACTCTTCTCATTGACACAAAAGTCTTGTCCAAGAGGCAT
ATTTCCATAGCCATTTCACTAGGTGTTCTGAATTTTTCTTCTTACCCAGCCAAGCCGTAA
TGCATTACTTGAAAAAGAGAGGAATACTTCTCGATTGCCCTTGCTGTCGGTGAAGAGGTC
AGCTGCTTTCAGCGTATCTTCCATTTGTAAATCCGGCAATCCTTCAAGCACAGCAATGCA
TTTTGGTATGCCATAGGGATCCTCCAAGTTCCTCTCCTCAATGCCAGCAAACAGAACTCT
CTGTTCTCTTTTGAGGCTCAGGTACCTCCCATGGGAATCATCAGTTTGTCCCAGTTTTGG
AGTGCCACCATCAACAGGTTGCTTTACAAGGGGCTCTACAGGTTTTTCAATTGGATCAGG
AGTTCGATAATGCAACAAACCATTGGCAGTTTCAGATGATTTTGGGACATCTCTGTCTTT
TCTTTTGAGGCTCGGGTACCTCCCATGGAAATCATCAATTTGTTCCAGTTTTGGAGTCCC
ACTATCAGCATGTCGCTTTGCAAGGGGCTCTGTAGGTTTTGCAATCTGATCAGGAGTTGG
ATCAGGCAGCAAACCATTGGCAGTTTCAGATGATTTGGGGAGTTCATCATAGGCCTTGAG
TACCTCCACTAAGGTTACTTCAAGACCTTTCACATGTCTTTCCGGGAATCGCTTCTCTCG
AGCTTTATTTACCAAGTCTTGCTTCACCTTTTCTGTAAATGGCAAGAGATCTTGCAAACC
TACAAAAGCACTGTAGAAGATATTGTTTCATTAGCAAAAAAGTAATACTTATACTTTAAC
CTTCAAAGAGTCGTTACAATTAGCTAAAAATAGCAAAGAGAACACAGACGTGGAGGACAG
CAATGACAACAAACCAATACTGTATCCAGAGGAAATGGTTACAAAGTTTTAAAGCAATCA
AATAAATGCTCGACATAGAAAGCAAGTTAGGCCAGGCGCTTGTGGTAGGCACCAGGTTCT
AATTTCTGTCCGTTTTGGCAAGATCGGAATGATTCCTGGTCACATCCCTTGTAGCAATGC
TTAACAACCATTGGGCGCTTCCGCCGAATCCTGTGCATGCTAGGTGGGTTTTTCATTATT
TTTGAACTATCTAACTGTCTCACAATCACTCAATGCATTGGAGGCTAGGCTCTTAGGTTG
GCGCTTCATTGCCGTGTTGGAGATGGACTCATAAACTAAAGCAACTGATTGAATCAACCA
AATGGAGTAATTTAGTTATTCTATTAGCACCAAAGTAATTTAAACATATCTAAAGATCAT
TGCTTACCAAAATTTGAAGAGAATAAAATAGTCAACAACTCTAGTTCAGTTTGTTGCACA
GGCTAAATTACAATAGAACTTAAAACATTCTCATTTTTACTATCTGAAAGAAAATGAAAG
ACCATAGCAGTGGTCAAAAGTACTGATGAATAATAAAAAAGACTACTCTTTTCTTTCCTT
TTTTGAATTGATTGGAAAGACTACTCTATTTAAAAATAAATAGTGTTAACTTTAGAAATC
AACGAAAGTAAAGGTACTACTTTGATCTTTCAGTATGAATAATTGTATGTCCTAGGCTGA
CCTTGCACAGCAATGTGTAACCTTAGATCATTGGTGGAGCCAATAATCACACGACTTAAA
ATTTTGCACCATATGGAGATTTAGTATAGACAAAGACATACTAAAGAATATATATATTCA
TGCCCATCCAAGCCCAAAGTCAGATGAAGTACCACTCAGGAAAAATAAGATAGGAAGAAT
GAAAACTGAAAATTCTAAATCAGAATCAAATGATCACTGTGTCTTCTGATCACAGAGTGT
GGCGGTGGAGGCCTTACATAGTACTAAATCCGTAAAAAGTACAAGACGTTTTTGCAGTTC
AATTCACAGAGGTACTACTTATCTTTTTCCTTCATCGTTCCTGAATTAGTACGTAAAATT
TATCTTGCCAGAAATAAGAAATATATTCTCACTATAGCAGACAGAGTACTTATGTTCCCC
AAAAGGAAAAGAAAATGTAACTATTACGGTACCCACACATGGCGTGCCTCAACACAGATG
AACTTAGCAGGATTTGAGGCAATAAATTGGGGGTAAATAACTAAATATCTACAGGAAAGC
AATGTTCAGGATATTGGTAACTGCTACCATATCGGTCCGGTGTTGAGTAGGGATGAATCG
GTGAATAGGCCATTTAAATGAATTTGTTGGTAACCCATTTATCCAGAGGTTAACTAGGGC
CATATCTATATATCCTTTGCTATATAGCAACATGCAATGTACCAAGTGTCTAAATATGCA
ATTCTAGGCTACATAGAAACAAGGAAAATTGTTGCATTGATGTTCTGATGATCTTGCAGC
CAATCTAGAAGGCCATAAACCTGAACATGGAAAAGTAGGGAGGGAAGCGGCCAGTTTTGG
GTTAAAAATGTCGAGCAGTTAACTGACCGAGCCGATAATTCGGCCTGACAGCTGATAAAT
TGGCTTGTCAGACAAATTAACTGGACCTCCCAGTTAATGGTTCGAATAGCATGTTCTCCG
AATAGCAGTTAACTGACCATATTGGCAGTCAACCGACCAGAATTTGGAAAAGTGCAGGAA
AGTGCTAGTGTCTCCTGCGAGTGATCTCGATTGTTGTTGGTTTTTGTGCAGATGCTAGAT
GACTCCGAGAAGATGCACGATACAAAAGGGCAAGTACAAAGTGGTGCATTTTATCAAGAG
CATGGCGCAGTGTGGCATTTATGTATCTGATAAGTCGTCTATGGTAGAACAGGCTGTTAG
AATTCTGTTAAACATGGCGACGAAAGGAGCTAGTAGCCGATGAGCATGAGTACAGCCTTA
CAGTCTTACATCTCTTTGGTGCCGAGAAAGACGACAAAGAACTTGCGTGGAGCAGGCTCC
TGATTCCAATCCTCCGGCCTGCTCACCTGCATGGAGAATAAGCATTAAACCCGAAGACTG
AAGCACATGGTCAGTATCCTGGACATATCAGAATTCAGGCAGGCAGAGATGCCAAGAAAG
AAGCAGAGGGGGAGGGAACTGGTTAGCTATGGGGGAGGAAACCCTAGGAGCAGGCAGTGC
AGGGATGTAGGCTGGACCTTGGCTGGCCAGAAAGGATAACCCTTGACCTTGGCGAGGACG
AGGTCCCCGAGCTGTGGTTCTCTGGTCCATTTGGGGCCCTGGGGGGCCCGCTTTCCGGCG
GCATCCACTGGGCGGCGAGGCCCTAGGTGACCTTCTTCCACAGCGTCCGCCCGCACCCCG
TTGGATGGGAGAGGCCAGTCGGCCATGCCAACGGCGGCGATGCGAAACCCTAGCAGCTCG
GAGAGCGGCACGAAAGGACCCAAGACCCCGCGGGGGCACCGGAAACAAGGGGAAATGATA
TTCTTGTTTTTATGGAGGGCGAAATGATATGCTAGAGAGTAACAAATTCATACAATAACC
CTTATTTTAAGTGAGCTGCTACGCGCGTCAGCCGGTGGATTTTTTGAAAAGATCCGTCAT
CTCCTAAGTCGTGGATCTCACGAATCAAGTGGCAGAACGTTATCATGTACTACTGCAACA
TAGGTTGTGGTGCGGAAACACGGGTCATGTTACAGAATTTTTTACGACATAAATCAAGTT
GCAATTTTTTTTATTGCAATAAAGGTTTTGCTACAATTTTTTTCTTGCAACAACAATCTT
GTCAAAGAAATTTCTGTAACAAAAGTCTTGTTATAAAAACTTTACCGATGTCAGAAAATT
TACAAAAACATTTTGCAACAAAGGTCTTGTTGCGGAATTATTCTGCAACTAAGATCTTGT
TGCAGAAATTTGTATCCTTTCCATAATCGATGTCCGTACGAGCCGTGGTCCTGTTTTTGG
ATAAGATGAAGGTGTTTCTAAGAAAGGAAAGGTGGACATGTGGTAGACGATGGAGGCGGT
TGATGCCTAGGAGCAATCCGTCGATAGATACTAATCATTTCCCTTATTTTAATCCAAATG
ATAAGTGGGTGTGTGATACTCCGGCTTTGACATGTAAGGATGGCAAATTCTAGTGACTCG
TGATAAACTTTTGTCGAAAATAAATGAAGCACAAAACTTGTCATGCTTGATAAATAAAAT
TATCATCCATGTATCACTAAACGGAAATAGATTCAAAGTTGTCATGTGCTTATTCCACAC
ACCAGGTACTTATAGGGATCCATTTTAAAATGGCAACCCACAATCTTTTTTTAGTCCTAC
AAGTCCTGAAAGTCATGTGATAATGATCAAACAAATGGTAATTTTTTCCCGAAACATAGC
AAAATAATGCTTTATTTTTACTTTACTTTGTGCTACATCATCTCCGTTCAAGGCAAATTC
TACAAAATTGTCCTAGCAACTTTAGTTGTTTTGGCATGACTAGTTTGGCTGTGCGAAACC
TATTTTTCTTTGCTTCAGTTCTCCACGTACCCTCCCCTTGTTCTGATCATGTGGCTCTTG
TCCTCAAGAGTGGTGCGCGTGAGGGTCCGGCTGCTCCAAAGAGTAGGAGGTATGAGGTTT
TTTTGGAAAAGAGACGGCTCTCTACCTGAGGTTATTAGGATGGCATGGGAAGCTCTGGGA
GAGGTGCAAAATCTCAGCCAACTGGGGGATGCTTTTGCTAAAACTATGTCATCGTTGGGT
AGTTGGAGTAAGAAGTTTGGGAATATTACTAGGGAGCTGGCCAAGTCCCGAACCCAATTG
GAAGAGCTTATGTCGATGAATGCTGATTAGTAAAACATTCGGAGGGTGACGGACAGAATG
AATAAACTTTTATACCAAGAGGAGATGTTGTGGCTACAGAGATCTAGAATCTCTTGGCTG
AAGGAGGGGGATCGGAACACAAACTTCTTTCATAATAAGGCGGTGTGGAGAGCTAGGAAA
AACAAGATTCGTCGACTCACGGACAACATCGGTGTGGTACATTCAGACTTGGCTACTATG
GGGAAGGTGGCGAACGAATACTACAAAGGTATTTTTACTGCCGACACAACACTTGACACC
TCGTCGATCGTGGATCTCTTGGAGGTAATGGTCTCGGAGGATGACAATGCTAAGTTGTGC
GCCCCGTGCAGCGATAAGGAGATAGTCGATGCCCTGTTTCAAATCAGGGCCTCAAAAGCT
CCAGGGCCGGATGGGTTCCATGCAAGGTTCTTCCAACGTAACTGGCTAACTGTCAAAGCT
GATGTTACAGCAGTGGTCAAGAACTTCTTCAGCACTGGGATTATGCCGGATGGAGTAAAC
TCAACCTCTGTTTTTCTTATTCCAAAAATCCCTAACCATGTTAAGATTTCTGATTACATG
CTTATAAGTTTGTGTAATGTCATATACAAAATAATCTTGAAGTGTCTGGTTAATAGGCTT
CGACCTCTCTTGGATGGTCTTATATCTTCGGAACAGAGTGTGTTTATTCCAGGAAGGATG
ATCACAGATAATGCGCTTGATGCGATTGAGTGCATCCACTATATTAAACAGGAAAAAGAC
CCGCTAAAAGTTTTTGCGCTTACAAATTGGATCTGTCAAAGGCATATGATAGAGTGGATT
GGGTTTTCTTGAGGCAGGTGATGCAAAATATGGATCTCGCTCAACGATGGATTGACTGGA
TTATGACATGTGTCACATCAGTGAGGTATGTTGTTAAGCTTAATGGGACCCTCTTGGGTT
CATTTGCACCGACGTGTGGCCTTCGGCAAGGTGACCCCCTTTCACGTTCCTTTTTGTGGA
GGATGGCTTGTCTGTGATTCTTCGAAATAAAGTTGAGAGGATGAGATCTCCTCGGTTAAA
GTGTGTAGGCTTGACCCCGGCATTTCCCATTTGTTGTTTGCGGATGACACCTTGTTGTTC
TTTGAGGCTTTGAGGAACCAAGCTGAGTCTGTGAAGGAGCCGCTTCAGATGTATGGTAAA
GCAACATGACAATGTCTCAATCTTGATAAATGTTCGCTTCTCTTTGGTACAGCTTGCCCG
TTGGTGCAGCAGGAACAGGTGAGAGCTCTGTTGGGAGTGTCTAGTTTGGTGTTTGAAGAA
AAATATTTAGGCCTGCCTACTCCCGAAGGCCGGATGTCGAGAGGACGCTTCCAAAACCTC
CAGACAAGGCTCACCAAGAGATTGATGCAATGGGGAGATGGGTATCTTGCCCAACCTGGC
CGGGAGGTTTTTTCATGGCTGTAGCTCAAGCACTTCCTACCTACATCATGGGAGTTTTCA
AACTTCCATTCACTGTTTGTGATGATCTAACTCAGATGGTGAGGAACTTCCATTGGGGCT
CCAAGAAGGGAAAGAGAAAGGTACACTAGAGAGGATGGCATCACTTGTTACAGCCTAAAG
ATATAGGAGGTGCAGGTTTTCGAGACTTCCTGTTGTTCAATCAGACGTTACTGGCTCGCC
AAGCATGGCAGCTCATTACTAAACCTGATAGTCTATGTGCACAAATCCTAAAAGCTAGAT
ATTATCCTCGTGGCAATCTTATGGATGGTGTTTTCTCAGGTAATGTGTCCTCGTCTTGGC
AGGCTATTAGTCATGGTCTTGATCTTGTGAAGAAAGGAATCATTTGGCGTGTTGGGAACA
CTCAAAACATTTGAGTGTGGCGAGATAATTGGATCCCAAGACCTCACTCTTTTAAGAGAA
TATATCCACAAGGTCGATGTTGCATTTGATTTGTTTCAGATTTGCTTAACAGCAATGAAT
CCTGGAATCTTCAACTGCTACAGAGGTACTTCCTGTCGGCGGGCGTGTTTGAAATTCTGA
AGATTAGAGCTTCTCCAAGGCTGGAGCAGGATGTTGTGTTGGAAATATGCCCTAGAGGCA
ATAATTAAATGGTTATTATTATATTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTA
TAATTGTATTAACCAGAAAAAGTAATACATGTATGAATATATAGATCATAATGTGTC