morexGenes - Barley RNA-seq Database

Contig contig_137669
Source Contig contig_137669
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_137669 (6755 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_137669

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6518	2	997 bp	MLOC_6518.1	Available	Available	LOC_Os01g59790.3, FRAME:+1, EVALUE:2e-119, 13101.m06359 protein ADP-ribosylation factor, putative, expressed
CDS Structure of MLOC_6518

Contig Sequence (6755 bp)

>contig_137669 6755 assembly3_WGSMorex_rbca.fasta
CCCCGGAGAAGCAACCTTGTCTATTCCACCATGGCTTGCGTCCATAAAGGACTAGCCTCA
CTCGGGGTGGATCTTCACGAAGTAGGTGATCACCTTGCCCTTACAAACTTCTTGGTTCAA
CTACACGCGAATTGGAGGCTCCCAATCGACACCTAACCAATCTAGGAGACATTACTCTCC
AAAAGGTAATATATGTGGTATGGATGACAAACTCCTTGCTCTAGTGCTTCAAGAGATAGT
CTCATCAACACTCAATCACTCTCTCATAGAATTTGGCTTGACGGAAGATATTGGTCGGGT
GGAAAGCTACTTGGGGAGGCTAGAAATCAAGATTCATATGGTTGGAGTGGGAGATCTTGA
TATCAACACATGGGTAGGTGGTTCTCTCTCAGAAAATGAATGGTGGAAGTGTTTGCTTGT
TTTGAGTGCTCTCTATGCGAATGAGAGTGAGATGAAGGGGTATATGTAGCCATCTCCAAA
AATCCAACCGTTNNNNNNTTATTGCCCAACTCGGTGGAACCGAGTATACACTCGGTTAAA
TTGACTAGTGCAAAATGTCCTAACTTTTGGCGTTTTGGTGAGACTGATACAAAACAACTC
GGTGAGTCCAATTCGGTAGACCTAGGCAGTTCCACTAACTCGGTGGCACCGAAACGCAAA
ATTTGGAAATTTTGATTTTTGACAATTAGACACCGGCAAGGTGGTCACTTCTTTTCGGTT
GTATCGAACCAAAAGATGGTTGCACCGAATTGCTAGGGTTTGGCTTGGGTTCTGTCTAAG
GTGGAACTCGGTGGGGCAGATAGAGATTTGTTGGTGACACCGAATTTGACATTTGGGTTT
TGGACAAAATCTTTTGTGAGAGTTTGACTGAGGTTTTTAATGGTTAATCTCTAAGCACTT
TAGGCAACCAGATCATTATCAATACTTCATCCTTTTTGTAATAGTACTCACCTTCGTATG
GACTCAATTGTGATTTCTCACATAAAATAAAATATAGAGTCTTGAAGCTCTTGCGAGATG
ATGTTCCTTGCATCTAGGGAATCCTCCTCACAGTCCTAGCCAACTCAGCCATTGGACTTT
TTTCTAAAATATACTTGATAGACTCATAGTTCGATGAGCTATATGTTGTTGTTAATTACC
AAAATCACATAAGAAGAAGTTGTGCTTTCAACACTCGATCTGAAATAGAAGCATGTGCTA
CTGCCAATTTTAATACAATTAAGAGAGATTGGGTAGAATCTTACTTTCTGAGCACATACT
AAGAACCTTGTGCACGTGTAAAATCTCAGCTGGTAGACGATGGTGCTCGCAAGGAACAAC
AGGTGTTATCTCAATGCCCATGTACTCTTGGTCTTCAATGCTAGCACGGATCTACAAAAA
GCAAAATGAACCAAAATCCCCAAATCAATTTGAATACCTAAACTACCGAAAACGTAACCC
TAACCCTAGTTCCATCACTGACTTGGTATTGCATGCCGTCGTCCGCGGAGTTGATGTACT
GCAGGCTAGAGTAGTTGTCGCTGCCCTCGTCCCCGTACAACATGAAACAACGGCGATGGC
GGTGTCAACGGTCGATGGCAAATTGGAGAGAGGAGGGTGAGAGCTCGATCTATGGTTCGA
GGGAGAGCGAGAGTGAGGCGTGCGGCTCGGTTCAAACCGAACCAACCACTTAGACTAACC
AAGCCGACCTCGTCCTAGCCAGCGGCGCGACATTTGTCGGTTGGCCAACGTGTCACCTAA
CAAGTAGGGTTGTGCGATCAGATACAGTTTCAACGTGTGTTTATACGGTACTTGCATCGT
TTTGCAACAATTAAGTTATGAAATGATACTGTCACGAAAAAAATACTAACGGTTACAACG
TGGCCATGCTATACTCCATGCCATTGCATCTTCCCGCCGCCCTAATTCAGTGACAACTTG
GTCCCACAAACCCATCACGGAGGGAGCCCTCTCACATCTCGCTTACATGCTGGGCCCACC
AGACGTCAGCCAAAACGAATCCCTCCGCCTCGCGTAGGACGCACGCTCTCCTCTTCTTCT
CCAAAGGCAAGTAGGCAACCACACCTCCCTCTGCGCCTCCCTAACCTCTACTCGCTTGTG
CTTTGGGCGATTCAACCCGAGGAGAGAAGAGGAGAAGAGAGGGGAGGAGGCGGCGGTGGA
GGAGAAGTTTGGTAGGGAGATCGATGGGGCTGTCGTTCGGGACGCTGTTCGGGGCGCTGT
TCGCCAAGAAGGAGATGCGGATCCTGATGGTCGGGCTCGACGCCGCCGGGAAGACCACCA
TCCTGTACAAGCTCAAGCTCGGCGAGATCGTCACCACCATCCCCACCATCGGTACCGACG
CTATTCACCGCGCTGCTATTTTCTGCTCCAGTTTCTTCCTGTCGCGCTCACGGTCATACG
CCCAAATCGTGTATGCGGTGGGTGCAAGGGCTGGCCTGGCTCGCATGAATTGCTTCCGCC
GTTGGTGGCATAAGAAAAATTAGAACTCTGAATTATTCATATGCTTTCTTTCACTTCTGT
CTAATCTAGAGTGTTAGATTTTTGTGCTGGTAGCCTGGTACCAATTGGATTCTGTACTTG
GAACAATTGATTTTGTACTTGTGCCAGTTCAGTCCCCTATCGTTTAGCTACTGCTTCGTT
TGTCCGTGGGTGTCTGCTGCGTACGTGGAATCAAAGATTTTGAGATACTCTCGTTCGGTT
AGAGCTAATTTTGTTAGGTTCAGCAGCCTAAGTTGCTACCATAGGTTGTCCTAGAATCCG
TATCGTCGTTTTCAAAAATAATAATAATATATATATATATATATATCGTTGAACATGTTT
AGGTTTGCCAGAATAATAAGTAGGGAAAATTAACAATTGTGATTTCAAATCCAAACCATT
GGCAGCGATCCAGTTAGGGGCCTTCTATTGCAATATGGCTTCACTGCAACAGTCTTGTAC
TCTTGTCATCAAATTGTCTATTTCAGATGTTACTTCTGTTAGGGTGGAATACTTCCTACC
TCCCTTTGGGAAAAAAGTGGTGAAATACTTGCCAATTCAAGGATGCTTATACCTTCCTTT
TTTATTACCTCCGTACCAAGATATAAGACGTTCTAGTTTAGCCTACAAAAACATCTTATA
TTTTGATTTGGAGGTAGTTTTTTGTCAATCCATGTATGATCTAGGGGTTAACGTTGTGGT
TGCTTACTCATTGGTTTTTCTTGTTTTGGTTGGGAGGCAGAAGTAAGGATTACATATGGC
TGATGATATCGTTTTGCTTTTGTTTACACAAGGGTTCAACGTGGAGACAGTAGAGTATAA
GAACATCAGCTTCACTGTTTGGGATGTCGGGGGCCAGGACAAGGTGAGGGTTTCGCTCTT
TTCTTCTTCTTGGATCACTCTTTGCTTGTTATTTCCTTGTTTGTCGTCACATGAATATAA
TCACCTGATTGCAGTTACTAAAATGTTTCCTTGACAAAAGTCTTGGGACATGTTTGGTTG
CCATCCACACTTTGCCACATTTTTGTGCCAGGAGTGTAGCAAATTGTGGCAAGGGTTTGG
TCGCAGCCACAGTTGTGGCATAAAAGTGTGGCTAAGTTTTGGGGTCAGCCAAACATGCTC
TTAAGATGATAAGTATATTTATGCAAAGACAAGCTGATGATTTATGTATGCCATTTTCAA
AACAGATAAGGCCTTTGTGGAGGCACTACTTCCAGAACACTCAGGGCCTTATCTTTGTTG
TTGACAGCAACGACAGAGACCGTATTGCTGAGGCAAGAGATGAGCTCCACAGGATGCTGA
ATGAGGCAAGTGCCATATGTACTTGTTGAAATCTTGGATTTTGTTATCTTCTGTAGACAC
ACAATCTAATTTTTGAAACAGGTATATTATAGAAGTATTGAACATTACATTCAGAGTGAT
GTATAAAATTTTACAGCATGAAGAATCTTATCTTATTGCACATGGTACACCTTGTGGATA
TCAATAATGCTGTGTCCCGGCAACTAGAATACTTTGTATGCTTTACATATGGTGATTTTG
AGAACTTGATTTTACACCACTAATAACTAATAAGCCTATATTATCATTTACTTTTTTCAC
CTTACAATGGTAAATCATTCTTCGGAATTTTATCTATGTCTGCCTGTGAAGTCAGTTCCC
ACAGTAATGTTTTTTTACCGGATTCCCTCAGTAATGTTTGCTAACTGTCACTAGGACGAG
CTGCGCAATGCTGTATTGCTTGTTTTTGCTAACAAGCAAGATCTTCCCAATGCCATGAAT
GCTGCTGAAATAACAGATAAGCTTGGTCTACACTCTCTGCGTCAGCGACACTGGTATTTG
ACCCTCGCTGATTTTATACCTAGACTAGATAATTTTTTTGCTAAGGCTTGCTGATAAGCT
TGGTGTTACTTTCCATTCTATCGCAGGTATATCCAGAGTGCTTGCGCCACAAGTGGAGAG
GGTCTGTATGAAGGGCTGGACTGGCTCTCCAACAATATAGCCAGCAAGGTTTCTATCTAA
CACTCAGGGCTGGAATGGCATTTTTTGGGTCAACTTTGCTCTGGTGTTTATTTTTTGGGG
TTCTAGTAGTTCAAGCCTTTCCCCGTGTTCAGCGTACTTGCATTATGACCTTGATGTTCA
GAATAAATGATGCATGACACTAACAAGTGCTATTTTCTTAACTGGATTGCAGTCCTGAAG
GCAGAAGCAACTAGCGTCTGGACAAATGACTGGAATATGTAGGCATGTTAAAATGCTGCC
AGGGTGTTGACATGTCTTTGTAAGCTCGATCTTTGAGCTGTTATCACACTGTTACTATGT
TGTATCAATGATTGAATGTACACACGAGGAAACCCTTTAAGCTACAGTGAAAATGATACC
ATGTCAGGTGCTCCTGGCCTGAGCCTGATGAGCGATGATGATCCTGCCCTCGTTTTGTGA
GCCGAGAAGTAGTCTGCACGTGATTAATCTCATTCCTGCGTACAATTGATTTTTGTGTAC
CTAGACAACGAACGCTGCGACGTGTTTGGTAATTGAGGATTCTGGTAATCTCGTTTTGGA
TAAGCTGGTTTTGCAGATTTGGCTTTGGTTAACGCGGATAAGCTGGTTTTGCAGATTTGG
CTTTGGTTAACGCACTCGTGGCCCTCACGAAAGCCAACAGTTGTCTTGTGGTCCTTTCTT
TTAAAGGAAAGGAAGTTAAACCCCGTTTTCTACATCAATCGATGTAGTCATCTTTATTAA
TTATTTTACAAAGGTCTTATAAAAATATATATCAATCTGTCTGAAGCCGTTACTCATACC
TACAAACTCGATAGTGTGAAGTGCTCTTACTCCTAATATCTAAAATCAGTGTCGTCGTTA
ATTCATCCACATAACGTATCGGGACCAACAGACGGTATAGTAGGCCTAAAGCGTACACCA
CACTATTTAGAAGCCGCTATCATTATCAGATCACTGACTCATCTTCAGAAGAGAGATCCG
CATCATCCTTGCCAATCCGAACATCCATCGACGTCACCACGGCGCCACCGCCCTGCGCTC
ATACGTCGAAACGTGAAGACTCTGGAAGAACTATCGTGCGTAGCACCTGCTAACCAGACA
TGACTCAGCATAGCACCTGTCGGCCACGCATGACTTGTCAGCTCCACCAAAGCTCCCGTG
CAAGACGAAGCCGCTCCACCTCCTGCCTCTGTCATCCAGCGCTGCTCCACAAACGATGCC
CGCAAGAGCGAAACGGCATCGCAGTATCGCCATCGTCCGATCTGAAAGACCACATCCTGG
GGTTTCCCCCGAAGTAGTGCCCACCATCAAGAGTCGTCAAGGCCCCACACAGTGCCCAGC
ACCACTCAGCCCTCAAGGCGACGCCTTCATAAAGGTCACGACATCAAGGATGACGGCGGC
CGCTCACCGGAGTTAGGGTTTTCACCTGAAAGGCGGGTAGGGGGAAGTGGAGAGCGGACG
TAGACCAACGTCTCCAAGAAGAAAAGCGGCGCCCTCGAGCGTCCTCGTCGGTGCGGCCGA
TCAAGGGGTTTCCCCAAATCTGAATCTCATCCACCAGCTTCACCCACGGCCACCGATCAG
GGTCCCGGCATGCCACGCCGGTGAAAGGACCATGGTGTCGCCTAGAGGGGGGTGAATAGG
CGTTTTAAAAACATCTACGGATTTGGCTTTATCCTAATGAGGAAGTAAACTAAGAGGATA
CTTTTCAAGCACAGATCCTAAATATACTAGGCTCAACTACGTGCACCAACAACTTGTTCG
ACCAAAATGAACACAACAAGATTACTCACAAGCAGAAGTAAGTTACACAAGCTTACTTGA
GCAATATCACAACATATGTAAGTGTATGACACAAGTTAGCAAATCACACTAAACACAAGA
TNNNNNNATAGTAGCAAGTATGAATTGCGGGATATAGAGTGTAGTCCTAAATGATTAATC
TTTATAGGGAAATAGCCAACACAATATAATGNNNNNNNNAATATGTAGTGAATGTATGCT
CAAGTAACCAAAGTAAACCACAAGTAAGGAGTTAGGATTAGGGATAACCGAAGTCACGGA
GACGAGGATGTATCCCGATGTTCACTTCCTTAGAGGGAAGCTAGTCACCGTTAGAGAGGC
AGATGTTACCACGAAGTCACACTAACGCCACGAAGGCTCGCCCTATTCTCCTAGAGACAA
CACCACGAAGGTGTTTCTCAACCACTAGTGGTAGGCCTNTGAGGTGGCCTCCAAACCCTC
ACAAATTTTCCAGGGGAAATCACAAAGGTTTGATT