Contig Data
morexGenes
Links



Map Locations of contig_137542 (5157 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_137542

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_6433 1 918 bp MLOC_6433.1 Available Available None
MLOC_6434 1 605 bp MLOC_6434.1 Available Available LOC_Os03g07960.1, FRAME:-3, EVALUE:3e-21, 13103.m00892 protein expressed protein





CDS Structure of MLOC_6433






CDS Structure of MLOC_6434






Contig Sequence (5157 bp)

>contig_137542 5157 assembly3_WGSMorex_rbca.fasta
GTATCCATACATGTATTTGAGTTTTCAATCAATNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATTATTGCCTTTAGGACATATTTCC
AACAGGTATGCCCTTACATCAAGCAAATTATAGAACAGACCTGCAAAAATAAATGGAATG
CGTGGAGATATGTCACGTCCCGTCCTGACTTGATATCTGCTTTGACTCTTAAGCATGCTG
CCATAAGCTCTTCTGTTACGTACTCACACCAGTTAAACTCGGCTTGTGGTCTATTTGTGT
GAGCGCGCCCCAATAATGGGTGTTTGTACGGTCATGACTTGGTGCTGGGGCGAGCAAATG
ACCCACCTCGAACATGACAAATGCGATTTTGAACGAGTCAATCGCTGGTTTGTAGCTATC
CTTGTCTAATGGTCGAGCCATGATTTCCTCCACATATGACAAAAGATTTTTTCCGTGTTG
GCTAATTCTTAGAAAATCACGAACAATAGTTGTGTCAGCTGCTGTGGCCCTTTGAATGTG
TAAAGGCCCGCACGGCACACCTAAAATCTTGTGCATGTCGCCTGCTCTAAATGAAATTTG
CCTCCCGGGCCTAATGTATATAGTCCTGGAGGTTTCTTCGACTCTAGACATGAGCCATAT
GCTTAGCTTGAAATTTGTCCTGGAATGAGTGGCAGATCCAAAATGCCTCCAAACTCCATC
TCCCCTACGAGATCTCTTTTGAACGCATCAAGGGAATCTACCATTGCACGTACTTTCGTG
GGAGATGAACGCGATGTAGCCGTAGGCTGGGTGGACATAGACATGCTGTCGTTCGCCTCC
TGTGAGTGCATGGACTCATCCATCTGTATGGACAACGTTGTGCGCAACTATACCTTGTAC
GTACGAGGAAGGCAAAAGTCAAAAATAGATGCAAAATGCTCACCGTAGTCCGGCAGCGAG
GTAACGACGGCTGCGGCGCAAATATCGCCCTGCTTAAACAAGCGCGCGGCGAGAAGAGAG
CAGACAGTGTGTGTTCTGGCACCGGCGCCGTGGGCAGAACAATTTATAGGCGGGCGTGGT
TGCGCGTCGCCGCGTGGTAGGCGTCGTAGCTTTGATGGCCCATGAATGCTTCGATGGGTG
CAGTAATGTGTTGCAGGGGCAGCAGGGTGTGCTTAATTTGTCTGTTTTTCATTAAGTATG
CTGGAACATGTGTCGTGGTGCAGAGCAGCGGGGGGTTATTACCGTCATGGGGGCGTGGGG
TGCACGTGGTTCGCGCGTGACCGACCGTGGACAACAAAAAAGAACTAGGTAGCCGAACGG
CAGGGGCGGAGAGTGCACCATTGATACGAGAATTTATTCTTAAGCAAGCTTTTATGGGGC
AGATTGGTGCGCAGAAAAATGGCGCTCGTCATGAACTAGCGGAAACATGCAGATCCTGAG
AGCACACTGGCAGAACAAGAAGATCAAACGGATACGCGTGGAGCCTAGCTGCGCCCAGTC
GCAGAAGGGGTCTATTTCATAACTTCTGCAGGCAAATCATGGCCATGAGCACCAGGTTCG
CTACGCCCAGGATGAATACCTTCTTGAGCCACGCCTGGTTCTCTTCGAGTAGCGTTACAT
GCGGACACATCGATGCGTGCGAGAGCATATACCCCCAGCGGGCGCTGAAGTACTGAAGGT
ACTTGTTCTCCCATTTCCAGAAACTACACCCGTCGTACTGTGAAAATCATGCAAAAACGG
GTGATTAGCAAGGAGGCTGCGGGCTGGATGGAAATGGATCCTGGAAAAAACTTACCCCAT
GTCGCCCACACTTGTAGAAATGCCTCCCTGGGTTTTCTGCGGTTGCTGAGACGAACCAGC
TGATGTAGCCGACGTTGCATTCCGGGCAACGGATGAGAGGCAACGGTGGAGCCTGGTTGA
CGGTATGGTGTGATGGATGGGGTTGGGAGCTAGACTGAGACTTGGATAAACCCATTGTTG
TGGTCTTCGACGAGAGCATGAAATGATGCTGATGAGCTGAGCTGACATGGGCTTATATAT
GGGAGCCATCAAATTCAAAATGCAGAGGAGAACGTCGTTCATCTAGCCATTGTAGTCGGG
ATGCTAGCAAACAGTCGGATCGATTCAATGCCCAGCTCCTGCCCCCGTCAGCTATAATCA
ATGTAGCAGGCCCTGCCTCGGGTGTAGTTTGTCAGGTGCTGCGAGTGTCAGGTGGCCAGA
CGGTGAGAATACACTCCTATAAGTAATACAAATACGCGTGAGTGAAAAACGTTATACAGC
TCGGGCTTTTTAACAAACCACAAGCTTGTTAACTCGCCAGCTGGGTGGAGTTTTGGGCGA
CACGTAAGGCTTTGTTCGGTTCCAACCCCCGCGTGGATCTAATCCCTGCAGGCCTTGTTC
GGTTAATCCCCACCACAAGGGGATTTGAGAGGATTGAAGGGGATTGAGGTGGATTTTGAC
TTACAGGGGATTTAATCCTCCCCAATTCACTTCAATCCCCTTGCAACCGAACAAGGCCGC
AGGGTTTTGATGTCGCCACCTAACCCCCGCGTGGAAGCATTCCACAATGGGAATTAATCC
CTATCACCTAATCTCTGTTCGCTTACAACCATCAGCAACAACAGTTTTAAGTGTACAACA
GCACAACACTAGTATACGACAACACAACAGGACAACATGAGTAATACAAGTCTTTTTCAT
CAGTAGAAGCAATCGATGACAGTTACAAGAAGCACGAATCAATTCATTAGAAGTCAAAAA
CAAGCTTGTGGTTTGTTAAAAATGCAGAGGACAAATTACCTTGCACAGTTGCAGTTTAGT
AGACGAAATTACGATCAGTATATGGATCTTTTCGGCGCTTCTAGCGCCCAGCTGACGAGC
TGGACAATCTGAGCAGCGAAACTGCGCCACCGCGGACGCCGGAACTGCAGTCGGAAGGCA
GGTCCGTACATCCGACGGATCTACAGAGTGACCTCCGGGTTCTGGGACCGACGGAGATCG
GAGGGAGAGGGCCGCTTCCCGTCGGATCAGGAATCTTGGCGTCGCCGCAGTGAGTTTGGT
CCCGGTCGCCACCAAGCTTGACCCGCTGCAACTAATGCGGCAGCATCCATTGGACAGGGG
AGAGGGAGGAGGGGAGCACGCCACCACAGTTTCCTCCAGTGGCACTTCTGCTTCTGTCCC
TCCATATCTGGCGTCGCCGTCGTCGCCGCCACGACACGAGAGAGGGCGAGAGAAAGCGTG
TCGTTTCGAGAGAGACAGAGAGAAAGGGTTTACTTCCACGAGGCGGGGCACGTGGGTCGT
TTCCCGGCGATTTCCACGTGGTTCGGAAGGGAACTAATCCCCGTGGTCTAATCGAAGGCT
GTTATAAGCGAGACCGGGATCCGCCCCCAGCCAGGGAGACACCCACGGGGATCAGCAGGG
ATTTGGCCAGATCCCGGCGGGGCTGGGGATAACCGAACGTAGCCTAAAGGCGTCAAACAT
GAAACATGATTCACTGATGCGGGTTCACTTCTGAATGGACAAAAGCTTATGGTTGCCAGG
AGCATGCCCCTTTTGCATGAGCACATACCATAGTTGCTGGAAACGGACACATTTTGTAGA
GAAACAAGGAAGCCTGGAGATGTACTACCCATACATACGTGCTTGTAAATTGTTCAGAGC
TCATCGCACATCAGTATGGTCCGATACTCAAGGTTGGCGGCATGATGTCCAAGACCCTGA
AAAGAAGGAAAATCCACTATCAGTAAATATGATTTCTTTCTTTTTATATAAGAAAGTACA
GCAAGGTCTTTCATTTTCTAACTTGTCTAAGGCTCGAAGGGCGACACTGATTTTGCTCCT
CATGCCTTCGGTAGACGACGATGGATCACGCACTGACTGCCGTACTAGCGCCTCAGATTC
TTCCAAGGCTCTGGGAAACAACAGGCATTATGGTCAGGCATGCATCGCTAAGTTAATTCC
AGAAGCAAAGAAAGTGGATTTCAAAATGTTTCCTTGTGTACTACATTACCGTGAGCAAAA
TTCCACGGCTTGGGGAGCAGCTTTGCCTTGACCAGTAGAGAAAGCATATTTTACCACCTG
CATAAAAAGTAAGTAAATTAGGATCCAGATTTGGAATCAAGCTATGGCACTATGCATGGG
AATAAAAATACATTTCCAACGGCTATGTGAATGGTTTAAGAGACAAGATCATTTCAAGCT
TCTGGAAGCTAAAATGCCCGCATGGTTTGCATAAACGAATAAAAAGATTTTACGACAAAT
GGTTAGCAACAAGAATATGATGCACTGATAACGTGAAAGTGTTGACTAATTATGCAAGAC
ACAAGAACATAACTTACTTCTTGGATATCTAAAAGCACAGATGATGCCGGGCAACAGTCA
AGTAGTGATACACACTCATGGTAAGTTGGCATCTCCAATTCCAAGCGCTCATCTACAAAA
GGAACATACATTTGTGAATCTTCTCGGCATGATAGTTAATTCACAGGAACTTTGGACTTC
AAGAGCTGGCTTGATTAACATTTACAAATGAAGGGTGAAATCACAGAACAAACATTCAGG
GTAATGGTTAGCAAACAAAGCTTTGATATACTTGAAGAGCTGTACTTGGTTAACATTTAC
ATTGAGAAAGTAGAGAACACAAATGAAGGGTGAAATCACAGAACAAACATTCAGGGTAAT
GCTGCAGAATAAATTGAGAAAACATTTGCAGTTGGTGTAAGAAATTATTTCTAAATCAAG
ACTCTAAAAATCCACTTGCTAAATGTTGGTTGCATCCGCGCTTGCACATATACTGCCTCC
GTTCAAAATTATTTGAAGTTTTAGGTTCGTCTTAAGTTTGACTAGAAAAACATAGCAACA
TCTACAACACCAAATTAGTTTCATTAGATTCATCATAAATTTATTTTTCATATTATATAT
ATGTATCTGATGTTGCGGATATTAGTAGTTTTTTCTATAAACTTGGTCAAAATTAAACTT
AAGGAATTTTGACTTAGGACAAACCCAGGACTTCAAATATTTTAAAATGTAGGGTTTATA
CATCTTTATCTTTATCTAATCTAATTCTAATAATAAAGAGGCTATCGCTTCCGTCGGAAA
ACCCATCGAGGTGATTTTACAAAAAAGCCCTTACTGTTTATGACATTAAACTCGTAG