Contig Data
morexGenes
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Map Locations of contig_137459 (4916 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_137459

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_6377 1 309 bp AK368803 Available Available None
MLOC_6378 3 1251 bp MLOC_6378.3 Available Available LOC_Os07g47420.1, FRAME:-1, EVALUE:8e-100, 13107.m05047 protein 60S ribosome subunit biogenesis protein NIP7, putative, expressed





CDS Structure of MLOC_6377






CDS Structure of MLOC_6378






Contig Sequence (4916 bp)

>contig_137459 4916 assembly3_WGSMorex_rbca.fasta
TGGCGGCGAAGACGGCCGCCAGGCCGAGAAGCGCCGACCGCCGGTCCTTGGCCGGGGCGA
CCTGCACGCGCTTTGCCGCCGCGGGCGAGGCCGACTGCGGCACCGCCGCGGCGGGCTTGA
GGCCGACAACGCTGGTGTTCACGCCGGCCATGATCCTCCCGAGGTCTTCTTGGAATAATC
TGGTGTGTGCGCGCGCGTGTGTGGTGGCCTCGGGGGATGGGGGGTGATGGTTTTGTTTTT
GATCGTGGAGGATGCTGTGGAGGGAAACTGGGGTTTGCGGTGGGCGTGTGGATAGGGTGA
GGCTTGCTTCGTTTCCATTGGCTGGCCTCGGCGCCACGGTGGCTCCCATTATCCGAATGG
GATGGGGCCCATGCGACACGTGCCGGGATCTTCTTGGCCTTGGCCTGACTGCATCACTAG
ATTTTCAACGCTTGAGCTCTCACGAAACAGCTCATTTGATTTTTTTTATTTTATTTTTTT
TGAAAAAGAGGAACTTAGACCCCGGCTTCCGCATCAATCGATGCATGCAGCCATCAACAA
CTCATTTGATCTGCGTACCATAGTAGCTCTATTCGAAATTACATGGCGTTTTTAAAGGTC
TGTAGTGATACTTGGTGTCTCCGACCACTAATTAGAATTTTTAGATTAATTTGAACCATA
GGACAGTTGTGCCCCTTTAAGTAATACTACCTCTGTTCCCTGATATCAGGTGTATAGGTT
TTTTTTTTTAAATCCGAAATATAAAGTGTATTGCATTGCGGCACTCGTTTGGATATTGGT
TTTAGAAATTACATGGCGTTTCTAAAGGTTTGTAGTGAAACTTCATATCTCCGACCACTA
ATTAGAATTTTTAGATAAATTTGAACCATAGGACAGTGGTCCCCTTTATATTAAGTAATA
TAATAAAGGATCCCTTTTTGAAAAAATAGGCCAGTTGTGCACTGGATTTTAGAGTACAGA
CGTATAATAGACGTAATCAAGGTCTGAAACACAACAAAGCGCATCTGGTGTAGTGGTATC
ATAGTACCCTCCCACGGTACTGACCAGGGTTCGATTCCCTGGATGCGCAATTTTTCCTGA
CATATTTTTTGTTTTTCCATTCTTATTGAATGACAAAAGTTAATCTCCTTGTGCTAACCT
AAACTTGGAATTCTAATTGTATGTTTTATCAGTGAAGATCAAATCTGCTGGCAATCTATC
CAATCATCTGTTTTGTCCTGATAATGGCGAGCCATGTCACCCCATTAAAAGTGATGAAAC
CAGGGGCATTCATGAGCAGGTTAGCTTGCTGGTAAGTAATTTATCGATCAGACATAACAA
CAATTAGGGCTCCAAGAGGAAATGTATCCATTATCATAATCCTTACTTCACATTTCACGC
GATACAATGCAGTAGCTTCCTGATAAGCTACAGCATGATAAAATTTATAGCCATCAGACA
TCTGCTTTACCACTCTGCTACAATCAGACATCCGCTTTTCCTTGCCCTTTATGAAGACTG
CAGAATACAGAATGGTCGACGAACTGCACACTGATTGCAAGCACAGATGATCGGTGATCA
CAACCATGGAGGGAACACATCTTTCAGCACCACAGTCAAACATCACCTGCAAGCACGAAT
GCTGTAAATCGGAATCACAAGAGGCAAACCAAGTGCGTCATACAAATGACATGCTCAGGG
CATGAAAGAAATATCTATAGACCGCATAACTAGCGATTGATTGTCAGAGGATGATGTCAC
CGAAACAATCAAACGGCATGGACAACGGGGAAAGCGAGCAAGCAGTTTATTTTCTGCTCG
AGTACCAATACTACTATAACTGCAGAAGCAGGATTTCATAATCGATAAGTGGGTTAGGCC
AATCTAACAGCAAACACATGCAACAGTGAGTTACAGGGAAATAATAAACCAATCGTAGAC
TGAGTATATATCAGAACTAAACCTTCAACCCAATCTTAGTCCGGTGTACTAAGCGTTTCT
ATGTTCATGATGGAAAAGCTCTACGTTCAGTGCAAACAGCACAGAGGTCATGCTGCGCCT
TAAGTTTCTACCAGTCACGACAACAAATGATCAGGGCAGTTATTGTTTAAGGGCATTCTA
ACTTCACATTTAGTGAAGACCACAAAGTGAAAACATTATGTACAGTACCTCCGTCCAGAA
ATACTTGTCCAAGAAATGAATGTATCTACATGTATTTTAGCTCTAGATACATCCATTTTT
ATCTATTTATGCAACAAGTAACTCCGGGCGGAGGGGGTACATCCGAAGGCTCACTAATCT
CATTTGAAAACATCTACACTTCTGAAGTAGTAGTTCGCACAGCAATATTACAGAGAACCT
GGTAAGTCAAAGAATGTGCACCAGAGGTGGGAACAAATAGTCCAGGTAAGTCAAATACAT
CACCGCAAGACGCACAAAGACAACCCTTGATCAAAGTGCCAAATTTCTATTAGCCTAAGT
GATGCAACATACTTCTTCAATTAACCAATTCATCTATGTATAAATCAGCTATATGGTTTA
TTAACAACATGACCAGCACCGTCTAACAACTAATAACCCAATGGAACAATTCAATCCCAG
AAACTACTTTGCTTGATTCATTCCACACAATTCAGTAAGTAATATGATCCAAAAATTCCA
TTTAATGCACTCACAGGTGAAAAAAGACCAATTATCGCCAAAAATTGCAACCGTCTCATC
CATACTCAATTTATCATCCAGTACATTCATATGCCATATGCAGGAATTCTCCAACAAGAT
AGTAAGACATTGGGTCCCTAAATCCACGCATATGGTCCAATCAGTTAACACAAGAACAAC
CAGGCCTCGACCCTCACCTCACATGAGCTCCTCCTCCTTGCGGAGGTACTCGCCGGCGTC
GGACTGGTGGAGCACCACCACAGCGTTGGTGTCGGCCTTCCTGCAGTCCTGCGCGCCCCT
GGCGGCGACCCCAAACCCGAGGGGCACGTCGGCCATGGACATGACGACGACGCCGTCGCC
GGACTTGGTGTTCTCGGTGATGCGCGCGAGCGCGGACTTGGGCACGGAGTTGCCGAAGAG
GAACGAGCGCTCCGTCTCGGGCTTGAGCCAGATGCGGCGGCGCGCGTGGGCGGCGAGGAG
GTCGAGCGCGTGGACGGTGAGGTGGAAGGCGCCGCCGTGGGTGAACTTGCCGATGGGCGT
GCCGACGCTGGCGAGGCGCGTGCGGGACACGGCGGTGGCGCGGCGGACGAGCGACTCGGA
GGCGTAGAAGACGCGGTTCTTGTGGAGGCGGAGGCAGTAGCGGCCGGACTCCGGGTCGGG
GCCCTCCACGGAGGGCCGATCCAGGAGGTGCTTCAGGTTGGGGCCGGTGAACTTGAAGAG
CTTCTCGAAGACCATCGTGGTCTCCTTCTCGTCGAGCGGACGCATGGCGCAGGGGAGGCG
GCTGCTGCGGCGGCGGCGGCGGCGGGGTTTGGGGGCGGAGTGGCGGTGAAGGTTGGGGAC
GGACGGAGAGGCTAGGGTTTAGTCGGGTGGATCCTCCCCCTGTTTTATCGAGACCGCGGG
CCTTTTGATTGTCTGCCGTTGGATCGGATGATAGCATTCCTCGCAATTGTTTCACATGCT
CTTTGACCACTTTCAATCATTTTTGCCAAAAAAATTAAAAAATTGCTCACCTAATTATAA
GTTAGATGTGGTTCCTAAGAGCACCTATCGGACTTGACAAATTCGACCCATACGTACATA
GTGTCTTCAAATAAAATATTTCGCAAGCACAGATCTTAATTTAGAAATCTTAAATTCATA
CTATTACATGCAACGTGAAACCTAATTTAAATGGAGCTCATCCGCCTCCGCCGTGCCCAT
GTCTGGAGGCTGGCTGCGTCCTCCGAGTATTGGTTCGATCATCGGCAAGGTAGAGTAGGA
CATGAGACACGCACGGGCTCACGGGATTCGAGGCGACGCCGTCTCCCATGCCCTATTCTC
TCTCGTGGGAGCCCATTACCTTGACGGTGCTAGTGGACGTGAGATCGATTATGGATTCAT
TCTCGGAGGAGCCGGCGACGTCCACCATGACACAGTTGTGGTGTGCGAGCTGGTGCACCA
TACGGGGCGCCGGAGAATGCGACTTCTCCTCGCCAACGTCCACCATCGTGAAGACCACCG
TCGTCTCCCACGCCTCTTGCCTCGTATGGCGGGCACGCCGTGTCATATTTGCGTTCGATG
ACGCCCATGTGTTCGCATCCGCCTCGACATGCCAACGAAGGGGTTGCGCGTGCATCACCG
CGTTCTTCCGCCATACAGCCTGCACCGCCTCCGGTGAGGCAGCAGCGACACACCTCGTGG
TGGATCCATGCGCCATTTGGGCGAACGCAATGGATTCCTTGCGGAAGGGGTTCGAGCGCT
GTCGTCGAGCGACCTCCTCCGAGAGCGCTGGAGCGCAAGCTCGACGATCATCTTCTCCTC
AAGGTCGCGTGGGATGACCTCGAGGTCGATAGATCTGGAGGTGTAAGACTTGAATCAACT
TCCAACCATGCCGGAGAAGGCCAAAAGTCGTAGATAGGAGCTTGATAGCGGATGAAAGTG
AAGAAGAATGGAGTGGAGTGGCTAGGGTTTGGTCCGAAGAATGGATGGGGACGAATATAT
GTGGGGTCGGGGAGCCAGCCTGAGTCGGGTCCGACGTGTCGAACGTGTCTGGTCGCCCCC
GGGCCTCCCATATCCGCCTCATATTTGGGTTGAATATAAGGTATTCCAGGCAGACTGAGC
GTTTGAGGTCGGTTTGAATCGCACGGATGGGTCGGATTTTTTTCACATATACAGAAACCC
TTGAAGCGAGACCCCAAATATTTTTTTTGTCGTTGCAAGCCTTTATTCCGCCACGATCCC
TTCTATATCTCTTTTTAGATACTCTCGGGGGGGTGTGTTGGGTAACGTAGCATAAA