morexGenes - Barley RNA-seq Database

Contig contig_137433
Source Contig contig_137433
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_137433 (7186 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_137433

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6363	7	3331 bp	AK367098	Not available	Available	None
MLOC_6364	1	325 bp	MLOC_6364.1	Available	Available	None
MLOC_6365	1	413 bp	MLOC_6365.1	Available	Available	LOC_Os03g39129.1, FRAME:-3, EVALUE:2e-16, 13103.m04246 protein frigida, putative, expressed
CDS Structure of MLOC_6363

CDS Structure of MLOC_6364

CDS Structure of MLOC_6365

Contig Sequence (7186 bp)

>contig_137433 7186 assembly3_WGSMorex_rbca.fasta
AATATGAATTTTCATGAAATTTGAGTTTCNNNNNNNNNNNNCTCCATGGAGCTCGGGAGC
CAAAAGCAATTTCCGGGGCCAAGCTTGCAAACAAAAGAAACCGCTCAAAATCTGCACTTT
ACTTTATAGAACAATAAAGGCTAGTACGTATAATACAGAACAAGGACCGCTATACGTTTA
CCTTTTGGTAAACCAACACAGTATTTTGTTTGGTGGACAAAGCAACCTTCAATTTTCAGA
GGGCAGGGGCAGTCCCGAATGCACAGTGTTCTGCACAGGTACCTTAAATATCATAATCAG
GGATATAAAATGTGGAATGTATCAGGACCATATATAGAATTTCAAATGTGCTGCCAAAGC
CCAGAAGGAATTAGACAATTGCAGGCCTGAGGCTCCATGGAAGGCATTTCCAAGGCAAGA
AGCATTTTTCTTTGTTCTATTTTACCTCTAATGCAAAAAAGATCTGCCTATTAGCTACGT
ACGCCATGTGTTTACAATAGCATATTAGCATGTCTAGTCTTTAACATTAATACGTGTGCA
AATCACGTTGCATAAGCTTCAACTGTAAACGCTAGCCCAAGTAAATAACTTTGAATTATT
TGTCTCTGCTTTTCCCAAAGTGCAGACAAAGATCCTTGTTTATTCTTACAATTTACTTTT
CCTGATATGATGTTTGTCCTTAGATCCGCACAACACTTCGCACACCCATCTGGTTTAGTT
TATGCTAATGAAAAATAGGGGTCACTGAAGAGGAGAAAACTGTGCTTGCCTACAGTTCTT
GCATTATTCTGACATACGAACCTTTACTATTCTGTTTTTGAAGTTCTGTATTGATAAGCA
TCGATTGTTGTAGTCCTCAGTGTTATCAAATATGATGTGGCTAAAAGCTCTAGAAAAATC
TGATACAACAATTTTAGTAATCATGGATTTAAAACAATCTGATGCACTGCATCTTGCTCA
CTCAGTTGGACGTCCACTTGCATGAGAAATGTTTTCAGCTCCTCTAGCGGGGTCCTGCTG
GAGACACACCAGCTGAAGGACGCTGCGTCCGGCAACAAGCGCACGTATCTGGTTTAATTT
CTGCTAGTAAAAAGGAGAAGAATGTGACCACATATGCACTGTAAACTGATCCATGTGTTG
TAACTTAGTCTTGCAGAGTAACCAATCCAACCATTCCAAAATTGAATTCGGCAAGGTAAT
AAAGGATAGAAGCTGCAAAGAGAAGAAAGAATACGAAGTGACCGGAAACTGAAGTGCTGG
TCCGCATGGTGGTGCAGAGGCCTACTGCCACCACCCACCTCGACTTGTTATGATCTTGGT
GGCTGTCATTTTCGAAAGTCCACTGATTATTAATTACTGTGTGTACAGACACTCGCAATG
TAAAATGAACCAGCAACATTGATGTTTCATGATTATATCTCCCTCGCAATGTAGAATTCG
CAACCACATATTGTGTTGCATAGGTCCCCTATGATTTCCAGGGAGAAATGCATTAGAAAA
TGCGACCATGATGTATGCATGGTTGCTTAAAAATATGATCATAAATCCATGCTGCAGTTC
ACTTGTCTCATATGCCTTAAACTTTACTGACAATTTTTATTTTATTTTGAGAATTTGGGA
AGACTGGTGCAACACGGGGAAATCTGCATCCCATATACATAGCTATTTACAGTTCTGAAC
TTTCAACAACAGAGGCAGGTGTCACAATTTGCAACTATGTCTATCAAACATCACGAGGAG
AACTATACCCTACAACCATGGAGAAGTTTTGGCAAGATTTCTGACATTATTGTTTTTCGG
TGAGTGACAATATATGGTAACCTTGGGCAGAAGATCTGGGTGTAGTTTAAAAGGTTACAT
TCTGAAATTCTGCTATACGCCTGCATTGACCAAAATACTCATCCGCTCATTACATGATGA
TGTCAGATGACTGATCATGGTCTGATTTTCAGTAACTGAAATGATTATTTTGTTTAGAAG
GATATAGTAAGCTGTAGAACATTTTAAATTTCCAAGTATGGTCACTGTTTCCAAAGACAA
AAAGAATGCATACGTTATTGTATTTATTTATTCATGAAGAAATGTAGATACTGATAAAAC
GACTGGATGCTACTAACTGTTTTTATTTATGTTGTTCTACATATCAGAAATGCTTATGTT
ATATAACCTGAACGATAAATATGTTTCTTATTATATAGGTGTATGTTTTGAAGATAGACA
TAACCTGACAGAGTGGCCATCAGGGACATCATGAGAAAGGCTGCGTACAAAAGACCCAAA
ATGAACGGACCATTCCCCGGACCCTACGGAAGTGGGAGCTACGTGCACAAGGCTGCATTT
GTTTTTTAATTGGATAACCCACTGAACCAATATTTTTCTTGTGCTGAAATGAATGTTTCA
AGGAATGTGTGAGCAATGTGCTAACATACAAGGCATTAGTGATTCTTATATATAGCAGTA
TATATAATAAAAACGTGTAATCTTGCGTCAAATAACTTCATGATCAGAAATATTAAAGAT
ATACCTTGTTTCCGTTTTGATAACTATGTAAGCCAACCACATTTATAATATCTTGAAAAA
GGAGCCCGTCCCAATATTCGGGTGGACCTTGTTGTATAGTTACTTGAATTTCCTTTCATG
TCCTTCATAGATAATTGTCCACAGATTCTGCTAAGGTGCTGACAAACATTAGTAAATACT
CATACCTAATTAACATAAGCATAGGAAGAACATGCAGCAGTATAAGGACGGCATGCTTAC
ACGTCCAATTACTTGTAACAAACATTTTTCTGTTGTATATTATACTTGATGCAAAATCCA
ATAATAGGCAATATTGATGCTCTGGTCAAGGTTTATTTTACCATGTTACAGTGGAACATA
CACACATTGTTATCTATAAAAAAAGAGATTTATTTGAAATGTTAAAATGACTGAGCATGT
CCTTTTAAATCGGTATAGCACTTATAGAAGTATATTAGAATGGAAACAAAAAGAAATTCT
TTATAGGCATAAACTAAACACATGGTGGTCAGAAAATGCTGTAATCTACGTCTTGATTTC
TTACACTGAGATGCAAACTCTGGGTTCAGATTTACAGCAGGAATATATACAGATTAGCAA
AGAAGCTAGTACTTCATCAAATGGAAATCTTACCTACTCAATATCTAAGCTGTATGTGCG
TCAGTGCGTGCGCTTGAGTACAATGTTTTCAGCCAGTGGCCGGGCAGCAGTGGTATCATG
GTATGGCATCCAGCTGCTAGCACTTGCAGCAGCGATAGCGTCCGGGGTAGGGCGGCCTGA
GGCACGTACGTGCAGAGATGCCACGAAGCGGTGGGGTGAGCATGCGGAGCAGCAGCAAGA
GTGCGGAGGCGTCTGTAAGTATCGCGATAGGGGAGTTTTAGGTGCTTCCAGTCGCGCGCG
GTGGGACGACCGCGGATCCCCAAGATATTGACCGTTGGATTTGGTACAGTAAAGATCAGG
CTCTAGATCATTGTCTTTGTAAATTGAATCAATAGTTGGTATTGATTTGGGATGCTAGGG
AGGAGAGAGAAAGAGGCAAAATTCAAAATTCGTACATTATAGAGTATATATATAGAAAGA
GGAAAAATAATTTAGTAGTAACAAATCATGATGTACTGCAGCCATTGAGGTCTCTCGCAC
ATTGTTGTGGCTGGTCGTGGGTTTGAGTCCTATGGTTATAAATTACTATATTTACAGAAA
AGCTAATAATTTCCAAAATACTTACCAAAATATTGATGGTGGTGGAAAATACGTATTTTT
TAAGAAAGGGCAGGGAAAAATCATGTAACAAAATTTCGTTCACTCCCTACAAACTGTACC
GCATCACCACCGATCTATTGAGAAAATATAACCTAGGCACCTATTGCCTAACCATATGGC
AACTACCATGAAACCATGGTCAGAGGCATATCTTTCATAACAAATAAATATAAAGGGAAG
CCAATGAACTCAACTACCACAAACATGTATCTGGATAACAGTAATGCAAATAAATAAATA
GTACCGATAAAAAATGCCATATTATTATCAGAAACAAACTACAATAACCAATCTTAACAT
AAACTACTCCAGGTAAGAAAATGCAGATTTAGTAAATGAAAAGACCACAGTCCAGCCAGT
GTGTGTAGACTCAGACTAACGGACAGCCTGTAATCACGAAGGCTACTGATTAATGAAGAA
ACACAAAATCAGAGTACCATGAGCTGGGTGCTGGACATGAACTCAAAATAACTACTCTTT
TGGATAGTCACGGGTTGCAAAAAAACAAGTTTATTAGGAAACGCATAACACAAAAAAGGA
AATGGCAGGCAATTCTTTACAAATCCTATGTCTGAGTTGTAGTTTACTTGATAAGCTACT
GAAGTAAAGTGCTATATGGGGTGGAATGACGGATGGCGGTATAAAGGATTTTGCTGGAAA
GGGTTATATTGAGTAGGTACAGCATTTGCTGCAACTGGTCCACCTTGAATTCCTGGTAAA
AATGGTAGAGGAATTGCAGGCATTAGATCAAATGGCCGATGTCCAATGGGACCAATCTGT
GCCACATTCGGAATCACAGGTGATAGAGATCTTGCCAGAGGACCAGTTGGTGTTGGTAGC
TTGGTAACACATGGCCGTGGCTGGTTCAAGTACAGCTGTTTCCCTTCCAGCTTTCTTTGT
TTCCCCTGCACTTGGCCATCTTGTTCCTCGTGTTGCTGCTGCTCCTTCTTGTGCTTCTTG
TGTTTCTGATTTTGCTTCTGCTGTTGGATTTTTTGCTCCTGCCTTGAATTTAATGTCGAC
GTAGTAGAGGCATTTGTTGTAATACGGCTCTTTGCATATTCAGCTAACAAATTGTTAATC
TCTTCCAAGATAGTAACCGATTTGCTTGAATCAGTGAGTTGCTGTTTAACCATAGATTCC
GCCAGCCGAAGATTCTCAATCTCCTTTGATATGGTTGGATTCTGGGACTTGTCTAATCCA
TTCTTGCTAAGTAACTCTAGAGCAGTCCCTTTTGCCTTCTCAACATATCCCTCCAGAAGA
GCAAGTGGTGGATATTTGTCCACCAATTGAAGAACCTGTGTCATTTGTATGGCGCTCAAT
TGTTGTCCATTTTCAATCAAATAATCAATTAAGTCACTGATCCTACTGACGAGACCAAGA
CCCTGGCAGAGATTGACGCAGTTCTTCCTCTGATATTTGCGTGGGACTGTGCCATAGAGA
CGGATGATCTCATCGACATCAAACTCTGATACAATGTTGTAAGAAATGATGAAGTTAAGA
AAGGCCCATGAGGCCAGCATGCAATGATCTCCACAATCCCCCCACTCACCGATCTTCTTC
TTCCAGTTCTTGGCAAACGGCTTGGCCTGATTAATCATGCGGACAGAAAGCTTGGGTGCC
ACAACAGGCACACAGCGGATCAGCGCAACACAGTTCTCCCAGACCCTGTTGGTCTTGGGC
CGTTTGTTGGTCAGAAAGATCCTAACCACATTAAGGACAAGAGCAGCGGCATCTTTGGCA
TTGCACATAGCCACAGGGTACTCTTGCCGGTAGATGTTGTTGTTAAACACGATATTCACC
AGTCCTGCGGCATTCATTCTAGAGCATGCCGCTGCAAGATCCTTATTACACAACTTTTTC
ACAGAAACCTTCTTGGCTTCCTGCTGCTCCTCTTTGGCATCCCCAACCTCATCGTCAGAC
TCCTGCTGTTCCTGTTCACCCCTCTCTGCCTTGCAGTCCCTCTCAGCCACATCACTAGCC
TCCAATACCTTATGCTCATTCACCTTCTCTTCTTCAGCCTCCTGCGTCTGCTCGCCGGCC
TTCTGCTCCTTGCCTGCCGCATTGTTGGCATCTACCTCATCTTCTTCAATCTCCACGACC
TCCTCCTCCTCCTCCTCCACAACCTCTTCTTCCTCCTCCTCCTCATCACCATCATCATCA
TCATCATCATCCTCTTCTTCTTCCACCTCCTCCATCACTTCCTCGTCCTCCTCTTCCTCC
ACCTCCTCCTCCTCGCTGGTGTCCTCGTCTCCTTGATTTTTGCGCTTGCCGGTTGGGACT
GGTGCGGGAACGGCGAGGGTGGAGCGGGCCCCCTCGAGGACTAGCAGCTGGCGGTGGCGG
AGGGAGATGGAGGACTGGAGGGGCGAGATGTGAGCGTCGAGGTCGTCCCAGGTGAAGGGG
AGCGGGAAGGGCGAGCAGGCGGCGAGGCGGTCGAAGGCCTCGCGCAATGCCTCCTTCTTG
GCCGGGAGTGCGGCGATTGCTGCCTCCACCTCCGCCGTCGCCATCGCCATCGCCATCGCC
ATCGCCTTCGGGGGCAGGTCGGAGTCAGGCTGCGCTATCGGAGGAGAAGGGGTAGGGATT
GGAATTTTGGCGGCGGCGGATTGGGCGCCGAGGCGGACTCCATCCAGACGCAATAGAAAC
TGTTTTTCCGATTTTTTCGGAGCCTTCTCTTTCCGTTGTTTGGACCACGGAAGGTACACG
GTCATTTGGCAAAGGCGGAAAATAAAGGGTCATGTTTGCTGCAGGATCCATAATAAATTA
ATTAAGTTGTTTTTCATGTTCATTTGATTCATAATCACTAGGCTGTTTTCATGTTTAGCC
ACGTAGCTATTTGTTCAAGTTTCCAAATACACAGCTAGCGTTTACGATCATAAAATATGT
TCAAAACAGTATTACCTCTGCTCGGAAATAACTGACGTGGTTTTAGCTTAAGTTTACGTG
GGACCGTTTCTCGTCCTTCGTGCTAAGTTTTCATGAATTAATTAAATCAACAATGCTTGT
TTTAGATTTCAATATATTTTACTTATTAAACCCACACATGTAAAGTCATGACCTCTCACA
AGATAACTCTATAAGATTGAATTGCAATGTTAAGATCTATATGAATGAAATGCAAAAAAG
ATACCATGTCATATATTTATTATATAGTTTCATACCGGATGCATCTATATATTGCTCTGA
ATGAGCATATAGCACATTTTGCATCTAATATGTAGAGCTATGAATTTCTTTAAATTGTGA
AAAACCTAAACATGGAAATAAAAGAAAAATAGGAACGATGTAAAGTAGCATAAAACCTTC
CCCAAGCTTAGAACTAGTTTAAGAGGGTGCATTGTTGCTATGTGCACATGCTTGGTCCTT
TGATGACGACTCTGGTTTGTTGTTTAGACCCCCCCCCCCCCCCCCC