morexGenes - Barley RNA-seq Database

Contig contig_137399

Source Contig contig_137399

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_137399 (6876 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_137399

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6342	1	2736 bp	MLOC_6342.1	Available	Available	LOC_Os02g46150.1, FRAME:-2, EVALUE:0.0, 13102.m05178 protein GAMM1 protein-like, putative, expressed
MLOC_6341	2	4448 bp	MLOC_6341.1	Available	Available	LOC_Os02g46140.2, FRAME:+1, EVALUE:2e-73, 13102.m05177 protein OsFBX59 - F-box domain containing protein, expressed

CDS Structure of MLOC_6342

CDS Structure of MLOC_6341

Contig Sequence (6876 bp)

>contig_137399 6876 assembly3_WGSMorex_rbca.fasta
GACGCGGAGCAGCTCCGGGAGCGCGAATCGGATGAGGATCTCTAATGGGAGGAGCAGCAG
GGTTTCGCGCGGAGCACACCGGAGTCGCCGCAGTGCAGAGGAGAGGATAAGGTTCGGGTG
GGGAGAGGGTTGTGGTCGCAATGCACTGAGAGGAGAGGATAAGGATCGGGTGGGGAGAGG
GGGAGTGGGTGAGATTGTGTTTTTTTTAATATAACGAGGTGGGTGAGATTGTGAGGTTAA
TTTTTTTTTGAGGGAATTGTGAGGTTATTTTTTATAACGGGAGTGGGTGAGGTCTTTTTT
TTATAACGGGAGTATGTTCTTATTTTTCTTTTTTTTACCTTTTCTGTGTCTACCATGTTT
ATTTGTACATTATGGAATATTTGATTCTATTTTGACTACTTCCTCCATTCCTAATTATAA
ATCTTTTTAAATTTTCGAATATAAATCACATATGGATCAAAATGTCTATATGCATCTGTA
TGTACTGCATAAAAGATATATGTTTAGGCACGGAGGGAGTATACAGACAATAAATATCCC
ATATGTTCTTTACGGAGAAATTCANNNNNNTGATTGCCTTGGATGTGTGATTTTTGCTAA
TTATGAGCAGGGAATTTTCGATGTACGGTTATTCGTGCGTTGCACATGCATGCTTACTAG
TAAATGAAAAAAACAAACAAAATCTACATCCATTTAGGATGAAGCGTTGGAGTTGGCCGT
GGTTGTGTCCATAAGAGCATCATACCGTCCATAAGAGCATCATACCCAGTAAAAATTGAT
CCTTCAAAAAATATAAGAGACACCGTAAGTCGCTTTTACAGTCCGAATTGTCTCACTGAT
CTCGTAAATTAAATTGTATTCGGCTATAGCCTATTTTTTCCCCTTTCTCCTCCCGTTTCG
ACGAGTCCGTCTCCGGCCACAACATGCCTCGACCTGGTGCCCCGGCGTCGCCCACCTCGT
CCCCGCCTCGTCCTGGCGCCATCCGTTTCGACCATGCATGCAGTGAAGGAGTCCCGCGTT
GCCGTCCTCGATTGAGCCCGGCACTGCTCGTTCCCGATTGAGTCCGACACTGCCTACAGT
CGCACGCACGTTCCCCGTCGTGGTCCCGCGAGCTTCCCCACACATGCCCAACTCTTCTCT
GGTGCCGCTTCGTCCTGATTCAGGCCGTCGATGGCCTGCTTCATCCTGCCCGTGGACGGC
CTCGCCTCGACAGTGAAGGTCGAGTTGGCCGCAGTTCTTCGTGCGGCGACTTCTTCCAAC
ATGCGATGACGTATTCCGATGAGTTGCAGGTAGATATCGGTCAGTTCCGCGGCGGAGCGT
TTGCTCCGACGAGGTTTAATCAGTTTACGGATTGAACTGTATACTGCCTCCAAAACTTTA
CCGTGTCCTTTATTAAAAAAATTAAGGATCAAGGCGTATTTTTTCATCGAAACTGTAAAC
GGCGTCGTTTTTTCTTATGGATTTGACACTATACGGGTATGCTAGATGCTCTAATCGAAG
CCCGTATGCGTAATCTGTAACGAGAAGGCGCCTACGAGCGGCATGGAGCGCATGTGCATG
TGTCGAACGGACATGGAGCAAGAGCAGGCGAGCAACGCCAGCGGCACACGTGACGCGATC
CGCGCCCGGGCGCTGGGATCTGCCAGATGCGCGCGCGCCACCGCATGCGAGGTGTCATCA
TGTCGCCGCTCCGCTCTATCCACCACCACCTCGACCGCACGCCGAGACAGACAAGGCGGG
TATACGCCGCCCCCCTATCTATGACCGCCAGGCCAGGGACACCCACCCCCGCACCGCCGG
CCTCCGCTCCGCGGGACCCGCGCGTCAGCCGCGAGAAGCCCCGCCCGTCTCTGCTCCACG
GGGACCGCAGCGCAGGCCGTTGGTTGCATCTATCTAACCACCGTGGGCGGGGGCGGGGGC
GGGGGCCAACGACCTTTGCTTCCCCTCGCCGCATGTTCCCCCCTCACGTCATCGCCCTCG
ACCGCGCGTCGCCATCGTCGTCCCTCTACCTCGAGCTCTCGGCGACTCCTCGGAGCCGAT
GAGAGGCGCCGGGATCGCGGCGGGCCGTGACGATTCCGGTGCTGGAGCAAGAATTCGCGG
GGAGAACTCCGGCCCCGGGGGCTGCTCTCACATGGACGGGCTGCCCGGGGAGCTCTGCTT
CAAGATCTTCCACCTCCTCGATCACCAGGCCCTCGCCGCCGCTCCCCAAGGTTCGCTCGC
TCGCTCGCTCGCCGCCTTCGATCAAAAACTCCACGGTTACTTCTGATGTCGGCATCCTAT
TATCAGCTACTCTACTTCTTATGTCGACGACATGCTATCATCAGCTGCTCTACCCAGGGC
CAGGGGCATTTCCTCTTCTTCTGTACAAGCATAATTCACAACTTGTGGCGGCCTGAACTG
AATTGTTAGTGAAATGCATAGTCTGCAGGAAGTGGAGCGCGTTGTCCTGCGACGACGAGC
TGTGGCGCAAGCTGTTCGAGGACAGGTGGGGAGCCGACGCCACGGCCTTCTACGCGCCGG
AGCCGGAGGGCTCCAAGCCCTGGAAGGACGTCTTCGTCGTGCAGGACCGATGCGACCGAT
ACGGCCTGTAAGTCCCTTGTTAACACGGACTTCAGAGTTCAGCATATCATACGTGAGTGA
GTTTCACAGGCAGTTGTGTTCGTCTTCCAGGGGCGTCAGGATCATCAGGGAAGGAAACGA
CTACTACCTCATCTACCAAGGCGAGATCCAGAGCTACCTGGGCACCAGCTGCGACGCCAA
GGACGCGCAGCCGCAGGGCGCTCAAGCCGACAAGAGGCAGATATCTGACCGGATCCTCTT
CTTCCTGGGAGACCTGGAGACTGCTTATGCGGACGCCAAGCGTGTCGAGGCGTGACCTCG
TCCTTCAGAACCAAAGCTGTTGGAAAATGTCTGTAAAATCCTTGTCCCTGTTTTGCATAG
CTCGTGCATAAGGTCGTATCTAGTCTACGTACAGACAAGCCATAGTGTTTCACCGTCGTA
TTCTTCGTCTGGACGTTACACTTCAGATGTTCACCTTTTACTAATCTTCTTGCAGTTCCC
AAACTGCAGATAATGGACGATACGAGTTATTCAGTCACTTATGCTTGTAATAGCAGTAAT
GAAAACAATGGCGAAGGGCAACAAACTAATGAGTTTCATCGTCTTTTCTTTAATCAAAAG
ATATAACTCTACTTGTTCGTTCAGCCGTCTTCTCTTTAATCAAAAGATATAACTCTACTT
GTTCGTTCAGCCTCGTACGGATAAGATAACCAATCTCTGCTATCAGGTGGATGTTTTACG
CCAAGGAGCATACATAGTCAAATGCCGACATGTCAATGGTAAATTCGCTGCACTGAAACT
CAATCATAACACGGTGAGACTGTTTTACTGCTTGTTGCTTCGGTTGAATTAGCATTTGAG
GGCAGCTCTGGCCATTTCCAAGGCTCCCTCGTAGGTCTTGTTCCCACCAATGAATCCACT
CATATGGATGAACACACAGCCAGGGATGCCGGTTTCCTTGGACAGTTCATCATCTCTCAT
GCCCCTCCACTTCTCTGGGAGAGCCTTTCGGCTCTCGAATCTGTCGGGTGCAACAGAGAC
GGCTTGCACTCGCCAGCCTTTGCTCCTCTCATCCTGCAGTTATGCGGACCAAGTCAAACA
TATGTATGAAAATCTGGTGAAACAAGAAGCATGCTAGGAAGAAACAGGTTGCAACAACAA
AAATGCTAGGAAGAAACAAGTTGCAGCAACAAAAACAAAAAAACAGGCGAAGAAAGTTGA
TCGCACTGCTGGCTGCAAAACTGCCAGCATTACTATTACTTTAAAGCATTACACCACTTC
TTCCCAAGATTAGCATTTTGGTGGTTACTATGCACAAGTGTATGCACACTATCCAAAGAG
AACTAGAAGTAGTCAATGAAATTCATATTGGATGACCTGGAAGGGGCCACATTTCTTACC
TCATACAGCACATACTTGGTCAGGGGATCAGTCTTCAGCTCCTGCTCTAGCTCAAATAGA
TGAAGTTTCCACTGCCATAATGGACAAGCGTTGAGGTTACATGCGCTGGTGATTTTAGTA
TTATCACACTTCAATATGTCAGGCAGTTAATAATTAAACAAAGCACTTGCTGAAAAAGGT
TCAAAGAAGAAGAAACATAAAACTAGTAATGCAACCGGCAAGAAAGCAGCAAACATCCAG
GGCCGGTACTAAGAAGCATAGGCTAAAGTTCTTATTGCCTAACAATTTTCAAAACTTCTA
CAGGACGTTAAAAACATGGTTTCAGATGGAAAACGCAAAAATATTGAGCACACTAAAGAC
TGACATAACCAGAATAGGTACAACATTCAATCATTTATGGCTTCCATGTGCAACAAAGAG
CAACAGAACAAAAACACAGTTGTGCATAGGACAAATGTGTACACGGTTCCAAAACTACCA
AGATCTTACCGGGCAGAATCTATCTAAAACCATGATTTCTCCACTTGGATCAACATTTCC
TCTTGACAGCAAACACTCCATGACAATAGATCTTGCAGGTAGCCACGACTTAACATGAAA
GCGGACACTCTGGCAATGAAAGCGGAAATATAGTCATACAAACAGGAGATGTTCTGCTTA
GGGACTAATGGAATTTGGGACTGCCCCATTTGTTAAAAAAGCAAAAGATATAACAAACAT
AATTTAGTAAGTCCTTAAGCAGTGCATGAACAAAACACATCAACTGACTAAACAGGCATA
AGTTATACCTCCATAAACTCACTTCCGGCAAGAGCCATTGCCTGTTGAAACGCGGCATTT
TCCTTCTCAGGTGATTGATCTGGATCAGTCCAATCTGGATTAAGGCGCCCAACACGTGAA
GACAAGTGTGTATTGTTCACATACTTGGGGGTTTGCTCCGTGTCATATTGATTGATTCCA
TTATCGATTGCATCAAGTGCCTGTTACATAAAAGATATTGCTTCTTTGGCAGATCATATT
GTATTGGGTAATTAAGACAAACATTAGACAAACAAACACACGAATAAAATAAGGAAGGAC
AATGGGATGTGTCTCAGAAAATTGATGTCCATTTATGTACTGAGGTTCTCTACACTTTAT
TAACTTGCAAACCTTTGAGCGCAAGTATAGAACTTGCCAACTGATTGATGATGTAGGCTT
ATATTACCTCTTTTCTGCCTAGAAGAAACGCCTCTGAACCACACAGCCTGGCTACAAGCA
GCCGTCTGCGACCGTGTTTAGCCAACATACAGTGCATCTTTCCAACTAACCCCGATAAAG
CCAAATCACATCTATATGTTAAAGCTAACTACAGACCCTTAACACAGGAAACAGTTCAGG
AAAAGGTGTAGATTCTGGAACTCCCTCCCTCAGTACCCCTATGTTTACGCAGCCTTAAGC
TCATAAATTACTTTAAAAAAAACTAATCTAATGAATTTCACAGCTGGTACTGCCGATTCC
TAGTCAACAGTCATGCTCCTATCCTTAAATCAAAGTTTCCATATTAAAAAGTACACATAT
AAATTTCACAGATGATTATGAGTTTAAATTCACACCTCAACAAAGCTTTTGTATATGGCA
AGATACACGCGGTGAACATCTTCATGGTCCTCATTAAGCTGAAGCTCCTTCGCAATTATC
TCCTTACCAAAATGCTGCAGTACAAAAAAAAATGATAAGCAAACCATCATTTTAACATTT
GGGAGACAAAGTAGCAGTTACAGTCGATAATTTGCAGCTTATAAGCTTCGATGGACTAGC
AAATTGTGAAAAGGCTGTGCGTGCATATAAGACAGGTGCGCTATGAAATTCACAACATCC
AGTAACAAATCCCCCAATGAATCCACCTAGTTATGTAGTACGATTGGGACCCATTTGAGC
AGATGTTGCCAATTTTATAACATAGCTTCTAATGGAAAAGAATTATTGTTTCAACACCTT
CAGCGTCTATGGAAAGTACCTTGTAAACAAGCCCAGCACTGCTAAGTTTCGTGTTAAAGC
CATATCCAAAGACCTCGTTGAAGCCCTTCTGGTGATGATCATAGCGATGACGGCTGGGAT
CATAGACACCACCAACGTCAAGCACGGCCTCCAGCGAATCAAGGATCTAGAGTTAAGTTC
CAAATAAAAAGTTAACATACAAATAAGCGCATAACGGAATACAAAAAATGATAATGCATA
TTTTTAATATTTTTGCTGTATCATATACACGTGGGATTTTGTAAGCAAATCATCCAACCG
GATGAAGTACAGCTGCCCACAGTAAGACAACTTCATAGTCTCAGCCAACAATAATTGTAG
AACTGACATGAACTGCAAACTAAAAAGGGTCATGAGATGTGAAATCATGCTATTATAGAC
ACAAGAAAACATCTTAACTACATGGCATACTAAGCATGGTATGTTGACAGGATGGAGTTC
ATGACTTCCTGTACTACTCCCTCCGTTTTCTAATTATAAGCCTTTTTAGAGATTCTAATA
TGGACTACATACGGAGCAAAATGAGTGACACTACACTCTAAAATACGTTTATATACATTT
GTATGTAGTCCGTAGTGAAATCTCTAAAAAGTCTTATATTTAGAAATGGAGGAAGTAGAT
GATACTAGGAGGCCGGAGCACGCACAAAAAAGAGGCGTTCATATACAAGTGTGATTTCAT
AAGCAAATCATCCAACCAGATGAAGTGCGGGCACACACATTAAGACAACTTCATAGTCTC
ACCCAATAATAATTGTGGCACTGACACGAATTTACAAACTAAAAAGACACAGTACTCCCT
CCGTTTCATAATATAAGTCTTTTTAGAGATTCCACTAGACGACTACATACGGATGTATAT
AGACATACTTTAGAGTGTAGAATCACTCATTTTGCT