morexGenes - Barley RNA-seq Database

Contig contig_137346
Source Contig contig_137346
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_137346 (7463 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_137346

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6299	3	5342 bp	AK367763	Available	Available	None
MLOC_6300	1	1143 bp	MLOC_6300.1	Available	Available	LOC_Os11g39140.1, FRAME:+3, EVALUE:3e-115, 13111.m03859 protein thioredoxin domain-containing protein 9, putative, expressed
CDS Structure of MLOC_6299

CDS Structure of MLOC_6300

Contig Sequence (7463 bp)

>contig_137346 7463 assembly3_WGSMorex_rbca.fasta
GACATCTCCCTCGCCATCAAGGTCGGCGTACAGTACAGGTTGGCCGTTGCTTCGCTGCTT
CTTCTTCTTCTTCTTCTTTTTTACCCCGAGTTGTAGTTAATTTACTGGCAATTCAGTTCC
CTCACAAACAAACTGGTAAAGAACACAGCTCGATATCTGAATTGCTTCCATATGTTATTA
TGTTTCATATGGGGATTGTTATGTTAGTTGGTAGTTAACGAGTGGGGTTACATAATTGCT
TGATGAGTGTTCGTACAACTTTCCCTTGCTTGATGTGATGTGATGTTGCGAGGGGAACTG
CGAACTGCATCTATGGATCAATTGGTAATTTCACTGTCGTTCTCAGTAACCAAAATCGTT
TTGCTTTACTCTTTTGAATGTGAGTAACACAACGCGCCCCATCATACTGATCTCGACCGT
ACCGATCATCGCATTCATGAGGGTTCTAGCATGTTAGCATGGTTAATGTGATTTGTGAGT
GTGGGGCTTGGATTCGTTGGTAGCTTAACTGCAACCTAATTCATATACGGCTAGATTGCA
ATTGCACTCCTTATTGAGGCAAGTACTTATGACTTATGAGTGACAAGGACTCTGAAAACA
GAGTTTCAGCATGAGTACACTTAGGTTTATATTCTTTGGTCGCTTGCTGAAAGAAGCGGC
ATTAGCTCTTGATTACGATGGCTGGTTGCAACGCAACTTTGGTTATGGTTAGTTTGTGAT
TCACTTGATTGCCTACAGCTACAGGGATGCCTGCGGACTTTTATTAATTGTGAAAATATG
TCAAGCATTTTGTGTCCCCAGTTGTTGTAGTCACAATGGTTTTGCTTCGAGTTTTCGGAT
TATTTAGGGTATAGATGCATGTGGAGTTTGGTTGGTGGCTCATTTCATACAACCTCAAAT
ACTGCACCTTTTATCATTCTGGAATTCGACCCTCAGTTTTTTTTTAGCAAAACGGGATTG
GGGACCCATATCTTCAGATTTTCATATAAAAAACATAAGGAGATCGTTTCTTTGAGAAGC
AGTGAAAAATGGAGCTGATTGCTTGGTTGCTTGGGACCATGTCTGTCGATCTGTTGAAGA
GATCTTCCAAAGATTTTGTAAGTAACCTGGTCAAACATTTAGCAACAGAAGAGATCGCCG
GAAGAAAAGCCTCTCTCAGGAACTTGGAGTCTGACAGGGGCAGACCTGGGTAGGTTTGAG
GAAAAGATTATATCGGGCAGCCCAACACTAGAAATATCACCGGAAGAAAATACCTTCAGT
GGTTATGTCAGATTATATTCTTTGGTGATCCTAGCAGGACAATAACGCATCATTTGACAT
TTGTAATTATTATTTACTGGTTTTACATCTTACACCTTTTCCTTGTCTGTCCTTTGTTAT
AAATCCACTAACTTTCCTGCTTGTTAACGCAGTCTTTGGGGGGGTTCTGTAATAAATTTG
GGAACCAAGAAGCACAGAGAAAAGTACTTCGACAAAATCGACAATTTGGAGTATCCAGGC
TGTTTTGCTATGACCGAACTGCATCATGGTTAGACTATCTATTTAATTGTTTCATCAGTC
TTTCTGATTTTTTGTTTGGTACTTTGATTGATTTGCAGTTGAACTGTCTATTGGGACTTA
TACCCAGCACCTAGAACACTGTTTACAATAGTTTGAAAATGTTATCTTCATTTCCGTTTG
TTGCTTTTCGACAGGGTCCAATGTTCAAGCTCTACAGACCACTGCTACATTTGATCCAGT
TACTGATGAGTTCATTGTTGATACCCCAAATGATGGAGCCATTAAGTGGTGGATTGGCAA
TGCAGCTCTTCATGGAAAATTCGCTACTGTTTTTGCGAGGTTAATTTTACCGCTTCAGGG
AAAAGGAGGGGAACCTGCTGACATGGGAATTCATGCATTTATTGTTCCGATTCGGGACCT
TGAAACCCATGCTGTTCTTCCTGGAATTGAGATCAATGATTGTGGGCACAAGATAGGCCT
AAATGGTGTGGATAATGGTGCCCTGAGATTCCGTTCAGTTAGGATACCCCGTGACAACCT
TCTGAACCGATTCGGTGATGTGGCGCGAGATGGAAAATATACTAGCAGTCTCCCCACGAT
TAATAGGAGATTTGCAGCAACCCTTGGTGAGCTTGTTGGTGGGCGAGTTGGCCTTGCATA
TAGTTCGGTGGGAGTACTCAAAGTTTCAGTAACCATTGCTGTTAGATATGCTTTACTGCG
TCAACAGTTTGGTCCACCTAAGGAGCCTGAAATCAGTGTGCTGGATTACCAGTCCCACCA
GCACAAACTAATGCCTATGTTAGCATCAGCGTATGCATTTCATTTTGCCAGATCGTATTT
GGTAGATATGTACTCGGAGATGAAGAAAACCAATGACGAGGATCTTAGCGCCGATGTCCA
TGTACTTTCGTCTGGGTTGAAATCCTATATAACTTCATACACAGCAAAAGCCATAAGCAT
ATGCCGAGAATCATGTGGTGGCCATGGATATGCCGCTGTAAATCGCTTTGGTGGTCTGCG
GAATGACCATGATATATTTCAAACATTCGAAGGAGACAACACAGTTCTGCTGCAGCAGGT
ACCAATCGGAATCCTCTACAAAGCTCACCACGATGTTCGTTGGGCATACCTCAAATACTG
TACCTCTTATCACGATGCTATATATTGTAGGTTGCTGGAGATCTCCTGAAGCAATATCAG
CAAAAATTCAAGGGAGGGACACTCTCGGTCACCTGGAACTACTTGAGAGACTCCATGAGC
ACCTACTTGTCTCAGCCTAATCCCGTCACTGCTCGGTGGGAAGGGGAAGATCATCTCAGG
GATCCTAAATTTCAGCTGGACGCATTCAGGGTGAGTCCTGTCTTCGTAATTTATGATATC
AGTAGCTATTGGATAGAAGTCCTGTACTGATTGCGTAAACTCTGCTCAGTACCGAACATC
AAAACTACTGCATAGTGTTGCCGCTCGACTCCAGAAGCACATGAAGACACTCGGAGGTTT
CGGTGCGTGGAACAGATGTCTAAACCATCTGCTCACGCTCGCGGAGTCGCACATTGAGTC
TGTCATCCTCGCAAGGTTTATAGAAGCAGTGAAGAGGTATCGTTTTTGTGCTGTTACTTG
TCCTCAGTTACATTGCGCTTACCATCATTGCTTACTAGCTAGTTAGCTCCACACATAGGT
TTAGAAGTAAGAGTTTGTTCAATAGTTACTACGAAGATTTGTTTGGTTGAGATCAGTGAA
GGCATTGAAAAATCCTCCTGTCGCCCTGACTGCATTTTCCAACCCATTAATCATGATTAT
TTGCGCCTGTATTGTAAAATTATCCCTTGAAAAATCCTCCCGGCTCCCTTTCTATATTAT
TGTAGTTCTCTTGCTGGCACCCTTGACTTCTGCCACCGAGCACCCCTTTTTGTGTTTGAG
CCCTTATCATTCTGTTACTTAGCTGAACCTTGAATGGAAATTAAAGTTGAACCACCAAAG
CCTACTCACCATTGAAATGTTGTGTGAAACCCTTTTCACTTTATCCAATGAAGTTGAAGC
AGCAACAATGACTTGTGATGTGTCTATGCAGTTGCCCCGATGAAAAAACACGCGAAGTAC
TGAAGCTGGTGTGTGACCTTTATGCACTTGAAAGGATCTGGAAAGACATCGGGACATATC
GGAATGTAGACTATGTCGCGCCAAACAAAGCCAAGGTTTGCATCTGCTTGTCAATCCCAT
GGCACACAATTGCAGTTTCTGTTCTTAGCTTCAGACCAGAACCAGGACCAGGACCTGATG
CTATGCTCCTCTGTATGCTTGCAGGCTATCCATAAACTGGTAGACTACCTCAGTTACCAG
GTGAGGCTTGTGGCTCGAGAACTTGTTGACGCCTTCGATATCCCAGATCAAATCATCCGC
GCACCAATCGGCATGCAATCGGAGGCTTACGCTCACTATACGCAGGGCGTCGGTTTCTAC
AACCAACCAACATAAACCTACGATTCTACTGGAAGCTCATACCGTTAGGCAAGAAGCTAT
ATATAGACAAACTTCTATCATATACCCACCAACATAGTAAGGCTAAATAAGTGTATAATA
AGATCTATCAAAGAAAAAGAAAGTGTATAATAAGATAAGTAATAGACATGAGATGTGTAT
AAGTGATAGTATTATGTATAAATTTTGTCAGATTTTGTGTGGCAACATTGCTGTGAATAA
AGCTCATACATGAGAAAGTCTGTAACTACAATGTCTGATGAATTAAATCACTTCAAGCAC
GTGACAAGGCTTGATGTGACGAGGGAAATGCCAGAGATGAATAAGCTGAAATGCCTAACA
CTGAAGCATAATTGCAGCACTAGAACTTCAAACATATGTATTGTACCCAGATGATGTAAA
ACTGGAGCTATTGACAGATCACTAATACATCCAGCCTCCAGTTCTCTTGTTCGATACAAT
TCGGCACACAGAAATCATAAAGAACTTTTGAGGACTAGACTACAAACGAGACAAACTTAT
AATGATACAAAAGAGAGGATCATATCACTTCATCTTTTCAATCTGAATCCGAATCGTAAG
CAGTGGAAGATCTAACCCTCCTATTCTTTGACATGTCAGTCTCATCATCTTCTTCATCAT
CGTCTTTCTTCTTTTCCTCAATTATACCTACATTTGCAGGGTGTTAACATATTTGTTATT
TCAAATTGTGAAGGAATGCTGTATTGAGAAGTTAACAGTGCTATCTCTACCTTTCCTCTT
CAGTACATTTTCCAAAGCCCTGGTAGAAAAATCATCTTTACTTCCAAGGTCATCAAAACC
AACCAACCGATCAACAGCAATACCCTTCCTACAATACAAAAGTACCGCAAAAACACTAAA
TTAGAATGACCCTCGACGAAATCTGGCATGATGACATAGGAATAAAGAGTACAAAACAGT
TAGATGGCTCATTATCTAATGATGAAATAGGCAGGATCCATGAACAATTTTATGCACTTA
CTTGAACAATATAACACATGGCAACGTTTTGATTGCTAGTTTTGCCACAAAGAAGGGAGC
ATTCTGCAGTAGTTATCAACAGATCAGCATCTGTCGATGTAGTAAAAGCAGAAGTAACTT
AAAACTAACAGCGATATACGAACTTCGGCATCAAGCTTGACGAATTTAGTTCCCAAATAG
ACCGGCGCAAGTGCCTTCAAATGCTTATCCATGATCCTACCAAAGATTTACATCATTATC
ATTTACTAAATCATCAGGGGCAAGAGGCACTATACATAAAAAAAGGAGTTATGACTTACT
TGCAGCGGTAAAATTCACGATGGTAGAAATGGCAGATGACCTTGTCACCACGAGTGACCT
CTCCTAGGAAGTCTCCTTCAGTTATTTCCCTGTATTCACCATGGCCTTGCCTCTTCAGCA
CCTCACGCTTCTCGACCTCTCTCTGTTGCATAGAGAAAAATTAGGTGCTTAATGCATGAT
GTGGCACTTATACAAGCTTCTCAAGTGTGAGACGCTGATCGGTACCTTAAGAGCAGCAAG
TCGTTCAGCATGCAATTTCTCAAGCTCTGGGTCCTACAAAGCAGTTCCGCAATATTAATG
GTAGCGCGACAGATACCAAAGTTCTTGGTGCTCTACACTAGAGATAAACGCAAGACGGTA
AGAGATGGTGAAAAGTTTAACTCACGTCCAATAACTCATCAAGATCAACTTCATCATGGA
CCGCAGGTGCTGCTTGAGCCTTCTCTTTAGCTATAACTTCCTATCATGGTGTCTGTGTCA
GTATCGTGAAAAGGAAAAAATCATGATGAAACAAAGAGTAGTGTTATTCTTGCTCCACCA
GTAGATTTGGTAAAAGAGCATAGGTTCAGAGCCATCCAAGACAGAGAGGCCACCAGCTTA
CAGCATGGTGGAATTCATGAAAAGTAACTAAATTTGAGAATCAAAAGTAGCCCTATATCC
TCATTATGCAAAGAAACAGTAAAAAATTACTGCATGATTCCTAAGCATTACAGATGTAAC
CATTTTGCTAGATTCCCGGAGCAGAGCTGTCCCGTTACACACGGGCTAACATGACCCACT
CGCCGAATCTTAGGCTCCCAGCAGCGCCCGTCGTTTGATTCCGAAGGCCAAGAAATGCAA
GCACACGAAGGAACTTGTCCCAAGATCCAGGGGGGGCACCGGGCACGGCCCGGGCGCCGC
TGGATCCTCAGCCGCTCCGGCGACCCGATCGCCGGATCAGGCCAGAGGTGAGGTAACGGC
GACGCGCAAAGCGTGGAATCTGAGATGGGGAGAAGCAGGGGGCGCCGGGGGCGAGCGAGA
GTCACCTTCTTGTAGTCGCGGGCGGCGGCAGCGAGGACGTTGCCGAAGGCAAGGCCTTGG
AGCTTCGACTTCACCTCGTCCGGATCCATCTCTGCCGCTCGCGCGGGTCCGCCGCTTCGG
CTCTGGCTCGCCGGAGATTTGCTCCGGTTCGGTGCAGGTGGCGATTGCAGTGTAGTTTTC
CTTTTTCTTAGGTATAAGATTGTAGTGCCGCCGCAGTAGCAACAGATTTATACTTTCCTC
TGAAAAAGTCGGCCCACCAGGCCTAGGCCTGTAGATTTTGGGCAAAAACGTGGAAAGAAT
TAGTTTGTTTATTCTCAAAAAATAGTTTTTTCTCTTGTAAAAATAATCAGTTTTTTTTTA
AAAAAATAGAGAGGACAGAATATGTTGTAATATAGAAACATGAAAGGACAGTACTGTGTT
GAAAAGACGTGGATGTTGTCTAGAGGGTGGGGTGGGAATGAATAGGGGATTTGAAATAAT
TATTGTTTAGACTTGAACAAATGAGGAATAAAGTAGCGTTTAATTTGTCAAGCACAAAAC
CTAGAACAATTAGGCTCACATATGTGCATCAACAACTTATGCTAAGTAAGATAAATAACT
ACGTAATAACAAGATATATAACATGAAACAATATGGCTATCACAAAGTCAAGCGCATAAG
TAAAGGTCTCGGCTAAAACATAATTGAAGCACGCAAAGGCAGTGATGTATCTCGAAGCTC
ACACCCTTACGGATGCTAATCTTCGTTTGGAGCGATGTTCATGCACAATGCTTCCAAGAT
GTCACTAGGATCATCGTAATCTCCTCACGCCTTTGCACAATGCAAGATGTTGTGATTCCA
CTAAGAAACCCGTGAGGGTGGTCACCGAACGCGTACAAATGGCGACCCATAGGGCCAGCC
AACGAACCTGTATAATTGGCAACCCTTGGGGCGATCATCGGTGAAAGGAGTGGATGTCGC
CTAGAGGGGATGAATAGACGCTTTAAAATAATTANNNNNNNNNNNNNNNNNNNNNNNNNN
NNAAACTAACGTTTAATTTGTCAATCACGAAAGCTAAAACAACTAGCCTCATCTATGTGC
ACCAACAACTTNNNNNNNNNNNNNNNNNNAACTAAGTGATATCAAGATATATAACAAGAC
ACAATATGGCTATCACAAAGTAA