Map Locations of contig_137291 (5912 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_137291

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_6262 5 1217 bp MLOC_6262.5 Available Available LOC_Os04g56309.1, FRAME:-1, EVALUE:2e-19, 13104.m05860 protein expressed protein
MLOC_6261 1 4083 bp AK372640 Available Available None





CDS Structure of MLOC_6262






CDS Structure of MLOC_6261






Contig Sequence (5912 bp)

>contig_137291 5912 assembly3_WGSMorex_rbca.fasta
CTTTCTTCCTCTCTGATGCTGTGCTCAGCGCACCCCCCCTTCTGGTGGGCGCCGGCTCGC
GCCCATTCCCCCCGGCCGGAGATCCGGGCTGCACGAGCTCGCCGGCGCCCGGGATCATGC
CTCCATTGCCCTAGGGTTTGGCCGGCACGCGCAATTGGCCCGCCCGCATGCTCGATTCGG
GCCAGCGGCACCGCGCGCGGGGCGAGTGGCGGTTCGTATCTCGCCAATCGGTGCGCTGCC
ACTGGAGATGAGATCCCCTCCGCGGCCGGCGAGCTGGGAATTGGTCTACGGCCTCGCGCT
CTGCGGGAGGCGGCATAAGCCCTAGCGATTCGATCCCGAGCTGGGTTTCGTGCGGATTCG
TGCCTTCTCTGCTCTGTCTCCCAATCGCATATTGATATTGGGGAGGTTCCCAGGGAGGGG
TGGTGGTGCTTGTATGGATACAGTTAGAGGGGAGGCTTGGTCAATGGCTCCACCACAGCA
GCAGCGGCAGCCGTCGGGGCCTCGGGGTCCTCAGCCGCCACCGCAGCAGCAGAATGGTCG
CGTTGATCTCCGGGAGCTCAAGGCTCAGATGGAGAAGCGGCTTGGTCCAGACCGGTCGCG
GCGATACTTCGGCTACTTGAGTGGTTACCTGTCGCAGAAGCTCAGTAAGCCTGATTTTGA
TAAGATGTGCCTGCTTACATTGGGCCGGGAGAACCTCCGGCTGCACAACCGGCTCATCCG
CGCGGTTCTCTACAATGTCTACCAGGCACAGTGCCCACCTCCACCACCAGATGCTGGGAG
GTCTGTCGGACCGTCGGCCAAGAAGGTTTCCCACGCTGCTGGATCGCTTAATTCTTGTAA
TGGGGATGCCAGGCTGTTACAGGTCCAAGGATCGAGGTCTATGGGCGCACTGCAAGATCA
TCAGTTAAAAGATCGGTTGAAACATATGGGCCCAAATGGTAGGGTGGAGGCTGCTGCCAG
TCACACCCAGGTTGTTCATGGGGGATCTGCAGTTACAGAGAATGGCGCATTGAGTTCACT
TGAGTTGAAGAGATCGGTGTCTTTTCAACAATGTGAAGCTGCAGAGCCAATGGCAAAGCA
TCTGCGTGTGGATCAGTTGCTGCCTGAAAATGCGCTTAGGCAAAGAAGAATTATGAGCGA
TGCTGCAGGTCATTCTGCTCAAATGTCGAAAAGTCCTGTACGAGCTCCACTTGGGATACC
CTTTTGTTCAGCAAGTGTAGGTGGATCAAGGAAGTTACTACCGCCAGCAGTTAATGCAGG
GGAAGATCACTTCAGCAGCTGTTATGAGCAAGGTCAGCTGTTGAACACGGAGGTTCTGCG
TAAGCGCATGGAGAAAACAGCAGAAACACTGGGTCTGGCAGGTGTCACAATGGATTGTGC
CGAGCTTCTGAATAATGGTTTGGACTCGTACTTGAAGAACCTGATTAGGTCATCTGTTGA
GTTAAAAGGAGCTGACGTTCGAAGAGATGCAAGAAAAGGGGCATCATACAAGCAGCAGGC
CCATGGAAAGCAAATTAATGGTGTTTTGTTGCCGAACCAAGTTCAGATGCAGTCAAGCAG
TGGACAATCAGATGCTACAAATGATGGCAGAAGTCAACACTTGATCTCTTCTCATGATTT
CAGTGTAGCCATGCAGCTAAACCCTCAACAGCTTGGGGAGGACTGGCCAGTCCTCCTTGA
GAAGATATGTCTACGTCCTTCGGAGGAAAATGACTGACAGATGGAGCTTGCTAGTTCAGA
TGAAATTTTGTCCGATGTATTTCTTCGTGCCCCATCTGATGTACATTCGAGCTGAAGTAA
CAATACTGCAGTCACATCATAGAAGATGCACGTTTGGGGATCAAGGCAGAATTCTGCTCC
CAGATTTGTAGTGAAAGAAAGTCAATTCTTTTGTCCTGATAACTGATGCCCCAGTAAAGG
AAGTCATCTTCTGTTCATGCTGCATAGGGCCCATTAGCACTCCCGAGGTGGAGACTGTTA
CATCCATAAGTCCCAACTTCTATGTAACATCTGGCATAAAGGGACAGAGGACAGCAAAAT
GCAAGTGCTGTCTTGTAACTTATAGGAAAATGTTCTGTAAGTTTCTAGATCAGGATGTAC
ATTATTGATTGCAAAATTTTCTAGAGTATCTTCAGTACTAATTCAGGATCATGGATGTTA
ATTTTATTTAAATTCTTTGTAACTTTTTTGCAAGTTATATTCTAGATCCAATATTTCTCT
TTTCACCCTTGACGTCCATGTGTCTGTTCAGGGGCGGCTGGTGTGTTGTCTTAATTCCTT
GTGTTTTTACTCTAGAGTCCAGAAATAAAATGGTAGATGTATCCATAATTGAGTTGTGTA
TCATGATTGCGGTTCTCTTGTTGTCGCCTGAAGCAAATGGATTATTTGTTCAAAGCTGTC
TTTAATGTATTTAATGTTTTTCTATCTTACGCTTTTTGTCCAATATTTACTTCTGGAACG
GAAAGAAATCTCATGCAATTTCAATTCCATATAATTGCATATAGATGACGATACCTTGAA
TGGGCACATTTTCTGTGTCAATAGATGCATGCTGTGAGTATGATGCCTGAACTTTATCTT
CCGCGCTATATAAAGTCTGAAAAAGTCCTATTCAATCAACTCTGCCATTTACATGCATCA
GGAGGCTATCTTGCCATTTACAGCCATTCAATATCCCAAGTATTCTCCAGCACATGGTAG
ATATACATCATAACGGACATTTTCTGGACATATACATGTGTCAGGATTGATTTGATGAAT
CTTCCACTTCAAATAATTGATATGATTTGATGAATCTTCCACTTCAAATAATTGATATTG
TTGCATTTCCTCTCCGCCTCTGTTGCGGACTTGGCCCTTCCCTTTATTGACTCATCTGAT
TTCTTATCAACTTTGAGGATCTGGAACTTGCCCTCCGGCTTATCTGAGGCCCTGATGGTT
ATTTAAGGTATTATCAATACATTGTGTTTTCTTCGCTTACTTCTGAATTCTACATGCTTT
ATTATTGGATTGGAAAGCTTTCCCGTTTCATCTTGCATACACGCTATTGCAGTACTTTTC
ATATTTTGCAGAATAGATGTTAGGGGGTGAGTTTTTTGCTTGAGCAGCCTGTTGTTTCTA
GTTTCAGCCCTGAAGAGGCGCACCAACAGCAGCAGCATCCTAGCTAAATATGGTAAGGGA
ACTATGTATAACCTTTTATGGAGAACTTGTCATTTTCCTGGTGTGCTAACATGATGTATT
GGAATATCAATAGCTGTTGCAGAGCACTGGATGGATGCACCTGTTGTTCTCCTTGGACAT
TACTGCCTTATCTTTTCCCCTAAAGATATGTGTTGCCACCATTTTTCATCTCTGGACTGG
TTTAACTCTTGTGTTATCCACACTGCAGATATACTACGTGTGAGGAGAACAGTATCCTAG
CATAGTAATCTTGAAGGCAATTTCGAACTGTGCAAAGTGCAAATAAACCCTGCTCCTTAA
AGCACTCTGCTCTCTCCTTGTTTGAGACTTTCCCTGGAGGTTTGTGATGCCCTCTGTATA
TATGCCTGCAGCTTCATATGCTGGTATAGATCTGTACTGAAGATGGCTAGTAAAAGATGT
CAAACTTTGTTCATTTTTGGAAATTTGTTTTGGCCACGGCCTGATGACTGAGCTGGATAT
TTTCTTGTTCTGCAGACCCAGTGGCAGGGAGCGAAATCTGGTAGGCGAATTTCTTCCGCC
ACTCCCTCTCCATTTGGAAGCAATGGCGAAATGGTTCTGAACTTCTGAAGCTAGTTGAGG
GACTGCCGCAAAAGATATATACAGACAGACTGGTACCATCTCTTGACCGAAATTAACTGA
AAAATATTTACATCAAAGCAGCAGAGAAAGAAAGGAGCTATATGCATATAGCAGGGGGAC
TTTGACTCTCTCCGTTATCTGAGGATGACAGGCTCGCCGGCGCTCAGCACCGAGGCCGGA
GGTCGATGGAGTGGTGGCGGCGGCGCGGGCCGAGCCAGACGAGCGCCGTCCCGGCGGAGC
CCTTGGGCGGCGGCGCCCCGGCCATCATCTTCTCCGTCTCGGAGCGCTGCAGCATCTCCC
ACATGACCTGCACGTCCTCGTACGCGCACGTCTGCACGTCGTCGTGCAGCTTCACCAGCG
CGCCGCCCCGGCCATCTGAGCAAAAGAAAAATGTTTCAGTCATCAGCAACACCTACATTA
CATCTGGTCAGTTCCACGGTGCTCATGCACAACGGCGAGCAGGTGTCGCTGGCCATGCCG
CCGCTTCTCTCGACCGTCCGGTCCCTATGTATCTATCTCTATCTGTCTAACCCATTCCAT
CGCTAGTGACGCGCCTATGGTGACGCAGTACATACATACGTACAGATATATTTTTTGGCC
AGTGGCCACAAGAGACAAGGAGGACTGAAGAACGGCGAAGCATGCCACCACGGAGGAAGT
GGCAGTTGCCGCCCAACAGTGCGGCACCCATTCGTCCATGTATATCTACGAGCTACGACA
ACCAATTCCTACTCCTGAACTGATGATCAAATACGTACGTGCCAAACGGCGCGTGTCTAT
CTGGCCAAAAATTGTTTCATCTCATCTCCGATATTGTACCGATGTATAACTAAGAAACAA
ATTCAAGCATTGCATTAGCGGCACAAGCAAAACGTGTCTCTCCTACTACCGTCACTCTAC
AATTGTGCCAAAATGAAAACTTGCTCGGAAGAACAAGATCGACGTGATTAATTTACACTA
AAGTTCTCTTTTATTTTACTCCCTCCGTCTCAGTTTATAAGCCCGGCAAATATACCTAGG
TCGTCAATTTAACCAACTTAATGAGAGACATATATCATAAAAAAATATATCATTAAAAAC
TTTAGATGTTCTATTTTATAATAATATAATTTTTATATTAAACAATATATTTTATATAAA
TTAAATTAACGATATAGGTAAACTGTGACGGAAGGAATACTTTAAATGAGCATTTACTAG
AGGGAAACACAAACATTCCCCCCTGCACAAACCCATCGTCATCCATACATGCAATGCTAC
GTAGTTTGTGAAGCCTGATGATTGAATAAAATAGGCATCGTTTCCAAAGGAAGTGCGTAC
GAAGAAGAAGCAGACGAAAACCAAGGTCTGGCACGCCTCTAGGACCCACGCGCAGTGCGT
GCAGGTGTGGTATGGTCGTCTGACTATGGAGTCCAGTCGTGTGCCTGCATGAGATGCACC
GAGGCCACGTGCCAGGTCCAAGTATTCTTATAAAAATTTAATGCCACAAACTTCAAGGCA
GAGGCATGCATGCATATAGGAGTAGTATATCTGATATTTATACGGAGGATTGCATGGCGT
GTCCTGTTGCGCACAAACTAAACGACGGCCACCAACGCCTCGTGAGTCGAGACGCTGATA
TCTCTCTCTCTCTCTTCTCTCTTCTGGTAATAGCTGCGCTATCCTGGACGCGTACACACG
ATCAGTTCAGACGTCAGGATCACGTGTGTGCTCGACACCAAGGACGAACAGGTGCTTGCA
TGATTTGATCAATATCCAGACCTTTGACTTTTCATCTCATGCATACATACGAATCATATG
GTATAATCGATCGAGTTATCACTCCATCAGCGATTCGTTACCTAATTAACAGATCGATAT
CAAGCTAGCGTTGCCATTTGCGTCCTCTGAACGAAGGGAACAGTCAAAGCACAAGCAGGA
GCAGCCATGTCTAATAGACGAGAAGATGTATGGTACGAACCGGCGAGGTGACGAAGGAAT
AGTCAGTCTTACCATGTTTCTTGCGACGCAGGCGCGCGGCGGCGGCGGCGGCGACGACGA
CCCACGCGCGCCTCACCGGCACGGCCACCGCCTTCTGCCACCACTCCTTCGACCGATCCA
TCGACCTCCGCCGGCCGCCCCCCCCCCCCCCC