morexGenes - Barley RNA-seq Database

Contig contig_137187

Source Contig contig_137187

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_137187 (3982 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_137187

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6187	1	1638 bp	AK248434.1	Available	Available	None

CDS Structure of MLOC_6187

Contig Sequence (3982 bp)

>contig_137187 3982 assembly3_WGSMorex_rbca.fasta
TCTGCGGCACCCTCGCCGGCCAGCTCTTCTTCGGCTGGCTCGGCGACAAGATGGGCCGCA
AGAGCGTCTACGGCATGACCCTCCTCCTCATGGTCATCTGCTCCATCGGCTCGGGCCTCT
CCTTCGCGCACACACCCAAGAGCGTCATGGCCACGCTCTGCTTCTTCCGCTTCTGGCTCG
GCTTCGGCATCGGCGGCGACTACCCGCTCTCGGCCACCATCATGTCCGAGTACGCCAACA
AGAAGACCCGCGGCGCATTCATCGCCGCCGTCTTCGCCATGCAGGGCTTCGGCATCCTCG
CCGGCGGCATCGTCACCCTCATCATCTCATCCGCCTTCCGCGCCGGGTTCCACGAGCCGG
CCTACCAGGACGACCGCGTCGCGTCCACCGGCACGGAGGCCGACTTCGTGTGGCGCATCA
TCCTCATGCTCGGCGCCCTGCCGGCCCTGCTCACCTACTACTGGCGGATGAAGATGCCCG
AGACGGCGCGCTACACCGCCCTCGTCGCCAAGAACGCCAAGCTGGCAGCCGCCGACATGT
CCAAGGTGCTGCAGGTGGAGCTGGAGGACGAGACGGAGAAGATGGACGAGATGGTGAGCC
GCGGGGCGAACGACTTCGGCCTCTTCTCGCCGCAGTTCGCGCGGCGCCACGGCCTCCACC
TCGTCGGCACGGCCACCACGTGGTTCCTGCTGGACATCGCCTTCTACAGCCAGAACCTGT
TCCAGAAGGACATCTTCACGAGCATCAACTGGATCCCCAAGGCGCGCACCATGAGCGCGC
TCGACGAGGTGTTCCGCATCTCCCGCGCGCAGACGCTCATCGCGCTCTGCGGCACAGTGC
CGGGCTACTGGTTCACGGTCTTCCTCATCGACGTCGTCGGCCGCTTCGCCATCCAGCTCA
TGGGATTCTTCATGATGACCGTCTTCATGCTCGGCCTCGCCGTGCCGTACCACCACTGGA
CAACGCCGGGCAACCAGATCGGCTTCGTGGTCATGTACGGCTTCACCTTCTTCTTCGCCA
ACTTCGGGCCCAACGCAACCACCTTCGTCGTGCCGGCGGAGATCTTCCCGGCGAGGCTGC
GGTCGACGTGCCACGGGATATCGGCGGCGGCGGGGAAGGCCGGGGCCATGATCGGGGCGT
TCGGGTTCCTGTACGCGGCGCAGGACCCGCACAAGCCGGACGCCGGGTACAGGCCCGGGA
TCGGGGTGCGCAACTCCCTCTTCGTGCTCGCCGGGGTCAACCTGCTGGGGTTCATGTTCA
CCTTCCTGGTGCCGGAGGCCAACGGGAAGTCGCTGGAGGAGATGTCCGGCGAGGCACAGG
ACAACGAGGAGGACCAGGCACGAACCGCCGCCGTACAGCCGTCCATGGCCTAGGACAAGT
CGTGCGTGCTAGCTATTGCAGCTGCAGGCTGTTGAGTTGGTCGAAGATCCTTAATTTGGT
TTTTGTGATACATATAAAACGCTTAAACTACTACTAGTATGATATGTTTGCGGGCCACCC
AATCAGGGCCGGCTCATGTATATGCCCGTAATATATATACACATCAATCAATCAAATTGC
AGCTCCACTGGTCAAAGCTCAGAGAGTGAGCTACCATTGCTTGTTTTTTTTCTTCAGAAT
ACCATATTTTTATAAAAAGACAGAATCTTTTTTTTTTGCGTAGGACAGAATCTGAATTAC
AAGTTGCGAACAACAAGGATAATGCAAACATCACAACAAGGCTAGTCCGAAGACAACCAT
CACCGACGACATCACTACAAAGTAAAAAAAACTTGCCCTACAATAGACCAACAACGCCGC
GTCTCGATCATCACCGGTCACCTCTGAAAGACGACACCAACTCTGACGAACTTCCCAGTC
GACGCACCATCCACTGGTCAAAGCTCAAGCTCAGAGAGTGAGCTACCATTTGCTTGTGAA
GCTGATGCATCTCTTCGTAGCCAAAGAACCTCGGTACTGTACGTTCGCGAGTCAACGAAA
GAGAAAGCTTAAACAAATCTACGGTAAGTTCCGGCCAGTATTGTTGATGTGACTACAAAA
TAATATTGTTGATGTGACTACAAAATAATATTATCAGGCTAGTGACTTACCGTAGGTTTG
TAGTAATACTGGAAAATTATTTGGATCTACTCCCTCCGTTCCTAAANNNNAGTCTTTTAA
GATATTTCACTAGTAGTCCACATACAAAACAAAATGAATGAATCTATATTTTAAAGTATG
TTCATATACATTCGTATGTAATCCATTAATGAAATCTATTTAAAAACTTATATTTAGAAA
CGGAGGGAGTAGTTGAATACGTGCATGGTAGTAAAAGTTGGGCTTCGCATGGGCCATTCT
ACTCACAATATTGTTTTATATTGTTTGGCAGTTGGTTTACAAAGCAGTCAAAGTAAAATG
AAAATTCCATTTTCACGGAGACTGAAATTTTTGTTTTCATGTTTGTTCCAATGGAAAACA
CCTTTTTTGCTTTTGTTTCTGTTTGCACATAAAAAAGATCTGCTTTCGCTTTACAAATTT
CCGTATTTCCTCTCTATTTCTGTTTTCCATCCAAGAAAGCGGAACTTTCCGTTCCGTTTT
CATCCATAATTCTGATTATGAACGAATCATCTAAACTTTCTTTGTCAAAGCCAAAAGTTG
GAGCGACACGATGAGAGCGGCTCCTAGGGGTCAGGGTTTGGGGGGATTAACTGATCCGTG
AGTCACCAGATACGACTCACAAAGTTGCTTGTGATAAAACGTAAAATCTGCTTCATAGCT
TCCCAGTGCACATCGATCAGCGTCATATTGGCACCTTATTTACAGGGGAAGGAATGTTAG
GACATGTGGGAGTAAGGCATTGCAACCCACCAACTCAATGGTTGTCCACGTGGCGGAGAT
AGAGGTGGATAATGCCTTGCAGTTTTCCATGTGAGCACCGTGAAGAAGATCATTATATAT
ACTTGTGTTTGGTCAAGGTCCTTCCTCCGAGTCAGCCCAAATCAGCCTCAAATCCAAGAA
AATAACACACTCGGGGGGTGTTTGGTTACAGGGACTTATTAAAGACTTAGAACTTATAAG
TCCCTTTAAGTCTCATCTAAACCAAACAGGAGGGGTTTATAGGAGCTTAATGTGGTCATT
TGGGACTTATGAAATAAGACTCTCAAGGAGAGACTTATAGGGACTTATAGTTGTAATATG
GTCTTTTAGTCCATGTTAAGTCCTAGGAACCAAACAGGTAGGAACTTTTTAGGAATTTAT
GACTTATAAGTTGAGACTAAAAAAGTTTTAGGACTTATGAACCAAACAGGGCCTCAACCC
AAATCATTGATGGTAAAAGAACTAGACAAACCGAAAACGAGGCTATCCACAACATGAGCG
CAAGAAAATTGGGTGCTATTTTCTTTCTGGTTAGAAAAATGTGTTAAATCGTGCATGCAT
ATACAACGTGGCAAGCGTTGTAAAAGCAACCTCATCAGATAAATTATGTCAACACCAGCA
GTTGAAGATGACATAGTATTTTATTTTATTTTTTAAACGGAGGCAAAAGCTTTGCCTCAT
CTATTAAATGAGAAGGAATAGAGTTTGTTACAAACCACCCGATTACACGACATGAGGATT
ACTCTCGCAATATTATGAACCATAGTTTTTTGGCACCGGCGGCGACCTAGCGGCTAGCCT
CTGACGCGATGGAAGCAAGCAAAATAGTCAGTGGCGTGCTCTTGTGCATGAAAAATCTTG
CATTTCGCTCGTTCCAGATCGTCCATGATACAAGCATGGTGAGGAATGCCTTTGCTTGCC
TGAGTGGCAAAGAGCAATCACAAATACTTGCCCACCAAGCGTCAACCGAGTCGAACAAGG
GCCAAGTGTTCATGTCAAGGCCAAGAATGTGGTACTTGTCAATGACTAGGGGCCATAGTC
TTCTAGTGTAGCGGCACTTGTAGAATAGGTGGGTTTCACATTCTTGCACTCTCTTGCAAA
GGGGACATAGGCCACAGTTTGG