morexGenes - Barley RNA-seq Database

Contig contig_137091

Source Contig contig_137091

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_137091 (7287 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_137091

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6124	1	691 bp	None	Available	Available	None
MLOC_6123	1	675 bp	None	Available	Available	None
MLOC_6126	1	194 bp	MLOC_6126.1	Available	Available	None
MLOC_6125	11	2431 bp	MLOC_6125.10	Available	Available	LOC_Os05g30140.2, FRAME:-1, EVALUE:2e-95, 13105.m03074 protein RNA recognition motif containing protein, expressed

CDS Structure of MLOC_6124

CDS Structure of MLOC_6123

CDS Structure of MLOC_6126

CDS Structure of MLOC_6125

Contig Sequence (7287 bp)

>contig_137091 7287 assembly3_WGSMorex_rbca.fasta
CAGCGTAGATGGGGCATCTGTCGGAGAAGGAGGACGAGGAGCGCGGTTTGGTTGGGAGAA
GCTGGAGGGGCTTTTCGCAAAATTGCCGTCGCGACATTAATTTCGGGACGGAGGGAGTAG
TATACTACGTATCAAGATTGAATAAACTATACCAACGGATGCACCATTTGTAGAGCTGGA
CTAAACCGCTGGAGCAGAAACGTACCCTGCAAGACGCGGTGATAACATTTTTTTTCGGGT
TTGCTAAAACATCTGCAGTTGTTTTGCAATTTCATTAGAACATTATCACCATTATGATGA
TAACATTATCACTATTATGGTGATGGCAGGAATGAAGCGAAAGCTCCGCGCTTTTGTGCC
GCCGACGCCCAATGGCACCGCTGTCTTTTTAAAGAAGTCATCATTGTTCTCTCTTCCAAC
TAAGCTTCGAGTGAAAACCTAAGTTTGCTTCGGAGGCTCCGAGTGAAAACTCATGTTTCG
AATTTGACAGCAGCGACACGTTGGCTTTCCTGTTTTCTCTTTCGTTAGTGTAGTCGCACT
CCCGGGCTATCTAAAGCGGGACACGAGCCTTTGAGATGGTGATATATAACCCCTTGGCGG
GCTGGTGCAGTCATGGGCTGCCATTCAACCTACTCGTTGTCTGTGGCCGCTTCTCCAATC
CAAAAAGAAAAACGAAATTGATGCTGATGCAGAGCTTGCACAAAAAGCTCATAGAAGAAA
CAGAAACAAGACAAGAACCCGTGGAAGCAAGTTGAGAAAATAGCACTGTCAACGATGTAG
TAATGAAGTTCGGTAAAGCACAATGTGATAGCATAACACATTACCACAAAGCACAGGTCT
CCTCTGAATACAAGTTACCACAAACTACAGGTCAAATCTCCAAGTCATCATTCAGGAGAA
AAAGAAAGGGTACGGGTCTCTGAATACAACTCTGAGTCTGAGAACAGAGCACATAACAAG
TAGACAGACAGGCATCAGGCCTCGCAAACATAACGCTGCGCAGAACACGATGAAGCATAC
GCGACCGCCTATGAGGTCGCAAACTGGATCCTGAAGTGGTCGCTCGCCGTTTACAGGTGC
GCCCAAGATCAATCCGACCTCGCCTGCCAGAACAGACACCATATCAGCATATATATTAAT
CATACGCGATTTCTCAGGAAGAGGCTGAGAGAGTGCCCTGTATTACAGGAGATGCAGAAC
GGGATACACTCCTGCTCCTGGGGCTTCTGCTCACGGATTTTCCAGACACCTGCAAACGAG
TTCCATTAGCTGCTTTGAATAAGTGACTCGAGTGAAGATTTTGTGAACTGATTGTCGAGA
CTTACCGAAGAAACAGGGGATCGAGATCTTGACAGTGATCTGCAAAATGTTTCAGAAACA
AAGTACATTACTCAAAAGTGTTGTGTAATCCAATATTTTACACCAAAACCAACCTCACAA
CCATACCCATCCTCTATGTGCCTACCAATGTGTAAAGAACCTAAGTGGATTTTACGAGAG
CGCTATCACGGCGCATATTTATGCCTTTGGCTCTTTATACATATCACCAGGTGCGACTAT
TAAATCTGAAACTGAACAGAAAAACTAACCAAGATTTGCTAATGCCAACCTCTTAGCATG
TACACTTGCCCCAGAAAACCATTTTGCCCTTCACCCTTCTCTATTCATTTGTTAGCGCAC
AACTTGCCCAAATAAATGACTAACAAACACCATTTGCCATTTATCTTCTCTACTGAAGAA
TGGCGAGATTAATTAACTCAAAGCTTAAAGTCTTAACGAAAATGAGGGCCTTTTTAGTGA
TTATATGAAATTTAAGCCAACAATTAACATCATTTAAATAATACCACAAGACCCACTCCA
CATATCCTTACTATCAGGACTATCTTGCTCCTAGGACTTCTTGCTCACTCGCCATACGTG
CTGATAATCCAGCTCTACTATCCATAGTTCCAAACCATCCTGTTGAAATCTCAACGCATC
CAATTTTCTATGGAAGCAGTCCCCAGATCGCCGCATGGCCAGATCTAGGAAAAACAAAAG
AAAACCTTAAATGTCACAGGTTAACTAGCTAGCAAGCATGTTTCATTATTCATTGGACCA
TAGGTAACAAAAAAATGAGTCAAGCGAAAAGTAGAAAGAGATCGATTCTCTACAAGATTT
TAAAAAAGGAGCTATATATCTTGAGGAAGAATCGGAGATACATCAAAACAAACCATTGAC
CTATTTCTGTTTTTCTAACCGAATTACGCCATATACTAAGATCAATTTGTTCCTATTTCT
TCCAAAAGCGAAACCACCGTTACTACTAACAAAAAAACTTGCAGCTATATATACAGAATG
ACAAACCTTTCATCCACAGGTAAGGGTGACCGAGAGACAGATCTAAGGAACAATGCACTC
AAATATCAGTACTTGTCATAAAACTTGATGTAAATCAGAAAGAAAATTTAAGATACCTGC
TATAGCTGCGACTTCTCGAGTAAGAGAGGCTACGGCTCCTGCTTCTTGATCTAGCATCAT
ACTCCCTCACCTATAATAATAATATAATAACAACAGATTCATACAAGTGTAAAATCAAAT
GGACATCCAGATACCATCTTAACTACTGTTAAACTATCAGTGAAAAAGAAGTTAACCCAT
ACCCTGATATATGCCCTTGAAAATGCATTTCTGAACTCTGTACCATCGAGCTTCCTAATC
TGGAAAATTACCAATGATAAGAGGGGTATATACCAACTAAAACAGGAACAAACCACACAT
CGCCAAGATGCCCTCTTAGCAGATCCTCTCCAACAGCAATCGATGAATAGTTTACACAAG
AATTTTATCATTAAAGAAAGCGGAGTGTAGAGATGATATGACAGCCTACCGCATATTTCA
TGTCATCGTAGTTTGTATAATCCACAATTCCAACAGTTGCTGCAACACAAACAAAATACA
ATTGTCATCAATAGGATGTGCATAATGTTAAACCATGATTCTGATTTCCAAAGGACAGTG
CAGTTACAATTCAGGCAACTGAACCGAGCAATTAGCTCCTCAAATTTCTAGTGTGCACAC
TGCTATGATGTCAATATAACTGGAGAAGAAACTGGAAGATTGTCACTAACCTCCAGCCTC
GCGGTATACATCAGAAAAGCAGACATCGCCAGCCCGTCGCATATGGTCCTGAATACGTAA
TATTAAGCAATGTATAAGTAAATAAAGAAGAACAGACATCACCAACCAATCTCAATGGAC
ATCAAACTCAAAATGTATAAAGAGAAGTCATAACAATTCGTGTACCTTGAGATCTTGCCA
TGACGCTGACGAAGGTAAACCATCAACCATAACTGTGTGGCTCAGAACATGAACAGAAAA
GTGAGAATCCCCATCCAGACATATACCAATCAACTCATTAACAAGACAGAAGTACAAACC
TCGGTACTCAGAGCGCCTAGAAACACCTCCACGGCGTCCACTGCTAAAGCTGCTTGGGCG
ATCGTACGAGTAAGATTGAGCTTTTCCACCATGAGCTAATTCCACCTGAGAGATAACTTC
TCAAACAACAGGCACAAGAAAGCAGTCTTTGCTTTCAACCAAAAAAAGGCAACATATAGT
ACATACATACCCGCAGCCTGTAGCCATCAAAGTCATAACCATCACGGCCATAAATTGCGT
CATCAGCATCACGAGGATCCTCAAACTAAAAAAGGATCATTAGTTTTATCAAACCAAATA
TGATACACCTCATTAAGAGCCTATATTTAATGCCAAAACAATAACAATAAGACTATCACA
AATTCTGAGTATAAGTCTCATAAAACAGTGAAATATTCTACATGACCATGACAGAATACT
GACCTCGACAAAAGCATAACCAGGAGGCCTTGGAGGAATCTTCAAGTCAATATCGACAAT
ACGGCCATACTGCATAATGATACATAAATTTAAGGCATGAATAGATCCATTTTAATTCCT
TACAATGACATGTACATGAGCTGCAACCTGTACCATACTAGTTTCCTTACTATGTACAAC
TTACACTGAAAACATGGCCAGGAACTTCATCAGTTTGCGCTATAGTCAATTATCTTACTC
CCTCTGTCTACTTTTATAAGACGTTTGAGATGGTTCAGACAGTGTCTAAAACAGTTCAAA
ACAAGCTGTATAAAACGTCTTATAAAAACGAACAGAGGGAGTACATAATTGCCAAAGCCA
CAATGAAAGTTATTGCAAGAATCATTACACAATTGAATATTTACCTTGTAAAAGAGATCC
TCAACCTCCCTCTCACGAATGTCCCCAGGGAGATTGCCGACATAAATGGTGCAGCTGTTG
CGCCTGCCCATTGTTTCTGCAGTGAAGAAAATAAAGGTCATAAAGCCTAAATGAATTTTT
AGATGAAAAGGTGCAGCACACTTCTAATTTTTTATGCAAAACATACTAGCTCGAATGGTG
CAGATAAACATTAGAAGCACAAAATGGTATAGCAATCCGGTGCACGTAGTTCCGCTTGCA
CAGGGTCCGGGGAAGGGTCCGACCACTTTGAGTCTATTGTACACAATCTTTCCCTACATT
TCTGCAAGAGGTTGTTTCCAAGAATTGAATCCGTGGCCTCCTCATGGAAGGAGGTCACAA
GGCAACATAAGAAAATAAAATTGCCGCCACAAGTCATCAGCAGGAAAGAAGAGCAGGAAG
ACAGATTTCATATTCTTGTATGTCTACTATATTACTCCATTTGTTCACAGATATAAGATG
TTTTGGATATTTCAATATGGATTACACAGACTGAAATGACTGAACAAACACACCAGAACA
TGTCTATAATTCCATATACATCCGATTCAGATTTTTTTTAGAACATCTTATTATACTACC
TCTGTTCCAAAAACAACTAAAACCACGACACTTATTTTTGGAACGGAGGGAGTATTTGTG
AACAGATGGAGTATATGTGTACCATATCTTCTCGATTTAACTACAGAATAGCTAATACAG
CTATCAGATTGGGGCCTTAGCTTCCGTCGTCTATCTTCTCACTATGTAGGAATTAGTGGT
GAAAACTTCGCAATTGTTCAACAGACTCTGGACAGTTGTCCAGAACACCTTACAACCTAA
ACCAAATCTTACATGAGCATGAACCCTAAACAGATCTCAATGGTCATTACTAGGAGGAAA
ATTATCCAATCTTCGGTGGCACGCAACCACGCACTACCAAGGTTTTCTCTGGTCGAGAAT
AAGATTTCACGGTATCTGTCGCGTAGATGGGAGTCCGGAACAGAAACGCTGGATACAATC
AGCCCCGCATCGCGATTCACGAAAGGGGTAAAATCTATCCGTGCTTGCGGCACAAAACAA
AAGAAAGTGGAAGGAGGACGAACCTTGCCACCAGCCCACCACCTGTGGAACAACGAGAAA
AGTTACCGATGGATTCGGGCGGGGCCAAGCGCGGCGGAGACGGGAGAGACTGGCGGAGAA
CCCAACTGGCTGGAGGCGATCGAAGAAATCAAGATGGATAAATGTTCCGAGGTTTTCGGC
TGAAGTACCTGCGGGGCAGAGAGGTGGGGGCGGCGGGTCGAGAAGCTTCGGGACTCCGCA
GGCGACGCCGCGTGGAAAGCTCACTAGGCCAAAAGTACGGTCAAATTTTGTGTTACAACA
AACAAAATGCAGTTTCGACCCACGTTTGAAAAAATTAACAAAACTGATCTCTTTCCGTGA
CGTCAAGACTTCTGGGTTGCATTAGAGACGCTAGGGACCCTGACGTCTGGCTGGGCTCAG
TCGGTCAGCTCTGCCGTTGACCAGATGACGTGGCAAAGGGGCCAGACACCAGGGTCCCTG
ACGTCTGCCCCAGGACCAGACGCGAGGGTCCTTGGCGTCTCATAAATCCAATTTAGTGCA
AACCTACTTGTGTCTGTTGTAACCAGGGTCTGGCGTCTCATATGTCCAATTTAGTGCAAA
CCTACTGGTTTTTATTGTGCGCACCGAGACGCCACGGACCCTGGCGTCTGGTCCTGACCA
CATATGACCAGACTCCAGGGACTCTGACGTCTGGGTGCTGAACCCAACTAGACTATGTGG
TGGACTGTTGGTGTGGGTCCCACCACACTCACTTTCCCCTACCATCCACTCCGAGGTTGC
TGCTTCATTTCTGCTCTCCTCCTATCTCCTTCCCCTCAAGACCCCTGTTGAATCCGAGCA
AGAAGGTGATTTCCTAACATAAATCTGTCCATAAACTTTGCTCCTTGTAGTATTCCCCTC
CGATTCATCCATTTTTTTTTTGTTAAACCTCCTTATTATGATACATTTTGTACATCTTAC
ATTTTTTACATNNNNNNGAAACCCTAGCTAAATTTAGTGTGTATTGAGTAGTCATTTTCT
GAAATACAAGATGAGACCGTTCATTTACGTTGAGGCGGCGACGAAGCGTGAACGTAAATT
TATTGAGGAAAAAATAACCTACTGGGTGGCAGTCGATGATGCGTTGAATGCGGCGTGTAG
AGCCTTTTCAAACTACTGTTTTTATAAAGACGTTGCCAAAAGAATAATCGACAAAAAAGA
GAGCGAGATCAAGAAGTTGAAGAAGAAGGAAAAAGATTGTCGGCGTGATCTTGCAATGGA
AGTTGCATTATGTGCAACAAGGTAAGAACATCAGCAGTTTAACATTCACAATCATGGTCA
AGTCATTGATTGGTTAGTGAGGCAACCTTTTTCGCCACTTCCGAAGCAAGCTTCTCGTTG
GGCATGGGTCAAAGAAAAATATGATGTCATTTGCTGCAATCCTCGACCTAACGCCAATGA
GCCTATGTAATCTTTGTCATTTGAAACTACAATGACATGTATCCATCAGCCTGTTATGTA
ATATTTATCATTTGAACTATGTAATCCTTATCATTTGAACTATGTAATCTTTATTATTTG
AACTATAAAATCTTTATGATTTGAACTATGTAATCGTTATCATTTGAACTATGTAATCTT
TATAACATAACAGGTGCACTTCATTTCATTTCACGACATGTACACAAATTATTCATAACA
TAAGATGCATTTCATTTCATTTCACGACAAGTTCATGAATTAAAGATAACATAAGGTGTT
CACTACACGACAAGTTCACAAATTCAAGATAAAATAGGTGTTCACTACACGACAAGTTCA
CTTCACGACAAGTTCACAGATTATTCATAACATATCAATGGCACTTCACTTCACTTCCTT
CTTCCTCTCTTCGTGGCTTTCCCCTTTCTTGTAGGCACTTCCTCCTCCTCTTCTTCGCTA
GACTCATCTTCTTCCTCTTCCTCTTCT