morexGenes - Barley RNA-seq Database

Contig contig_136988
Source Contig contig_136988
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136988 (10355 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_136988

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_6028	2	1959 bp	MLOC_6028.2	Available	Available	LOC_Os09g01780.1, FRAME:-2, EVALUE:5e-23, 13109.m00093 protein transposon protein, putative, unclassified
CDS Structure of MLOC_6028

Contig Sequence (10355 bp)

>contig_136988 10355 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGGGGGGGGGATCTTTCTTTGGCCGGGCAAATTGCACTCTCACCTTCACGT
CACCTCCGAGATCTAAGCTTTGAAGCTCACGGTTCGTGCCAAATGGCACATGCCCATCGA
ACTTAATTATCCACTGATTTGCTGATGGAAACTTCGTACGTACTTAGCGGTAAGATTCAA
AAGTGCGATCCCGTTCACACAGACGTTTAGTTTGGATAAGTCTGTCGCTTTCAAAAACAA
AACGGCAATCAAATTATCTCCTGCAAACGTATGAGATATGACGCTTAACCTTGACAGTGT
CTATGACTGCCGGCCGGCAAGCGGGATACTTTGTTTAGGCTACCAATTAACTCATCTCCT
GTGTGTGTCACTATGGAAAAGAATATTGTAGCATAAGTGAGGAACTGAAGATATATAAGA
ACATGACATGAGTATACACTGACCAACAAATTAAAGTGAACACAGATGAAGCCAACAGGC
ATTTCGCCCTCTTTTTCCCGCCACCTTGGCCCACTGCTTGTGCTCTTGCTGCACCAAGCT
CATCTGCTTGTAGCCAACGTACTCACCACCGGATCGACTCCGCTCAGGCCTCCAAACTAC
ATCACCTGCTCTTCCGGGGAGTATGCGTTCGGGTTCCGTGCCCTCGAGGCTGACCCTAGC
CGGTTCTTCCTCGGCGTCTGGTTCAACATCAACCTCACCCAGGAGGCCAACCCAGCGGAG
CAGAAGGTGGTGTGGTACGCGAAAGATCCAGGCTCGGACTCGGCCGTCAACGTGATGGCG
CTATCCGTGCTCGACATCATCGATGGCTACCTCTCCCTCGGCGACACCAGCGGCATCATC
ATCTGGAAGAACCCCAACCCTGGCATGCTGTACGGCGCTGACCTCGTGCTTCAGGACTCA
GGCAACCTCCAGTTCCTCGCCTCCAGGGATAAGACTGTCGTGTGGGAGAGCTTTCGGGAT
CCGACCGATACGCTCCTCCCAGGGCAGTCCATGGGCCCTGGATCAGCCCTTCATTCGAAA
CACTCAGACACAGACTTGTCTCGCGGCCGCTTCGGCCTGTACGTGCAGGACGACAACAAT
ATCGTCTTCTACCTCATGAACCTTGCCGCTGGCAGTCTGGCTCTGGACCAGTACAACGCA
TACTGGGCGAGCAACACCGTCACCAACCAAACTCAGGACGGCAACACGACTCTTTTCTTC
GACTCGCCGGGGCATCTCTACTACCAAACCAAGAACGGCATGGTGCATGACGAGATACCT
CCACTTCTGAACTCCACCATCAGTTACCACCAGCATGCAACGCTTGATCCAGACGGCATC
GTCCGCCTCTACACCCGGCCGAAGAATGCCACCGGTGGAAGGAACATGTCGTGGGCAGTT
ATGGGACAGTTCCCAACTGAAGGGTGCAAGAGGGGCACCAAACTCCAAGGTTTGTGTGGC
ATCAACTCATTCTGTGTATATGGTCCTAACGACCGGCTTGATTGTGAGTGCCCAAGCGGC
TACTCCTATGTCAATTCTCAGCTCAGGTACATGGGCTGCACACAGGGGTTCATGCCACAG
AGCTGTGATGGGAAGAACCACTCTGCCGAGTTTGGGGTCGTCAAGCACCCGAACACCAAT
TGGGCAAAATCGCCATACGAGAGACGTTTGCACATTACAGAGGATGAGTGTGCAAGCTAC
TGCTTGAACGACTGCCTCTGCGCCGCTGCTACTTATGATGGTACTTACTGTAGCAAGATG
GTATCGTTGGCAGGTGTTGGACGGCGCGGAGGAGACGTTGCCATGGATACATTGATCAAG
GTGCGGACGAGCAGCCCCTCGGTGCCGTCGTCACCGAGAAGGATATTGCCTTATGTACTA
CTTGGTGGCTCAGCATTCCTGTTGCTGTCTGCAGTAAGTAGTCTCATGTTACATTGGTAC
CTTAGGACCAAGAACACCAACCATGACTTTGTGAGGGCTTACACCGCAAAAGAGCTTTAC
CAAGCCACCAATGGCTTTCATAGGTTGCTAGGCAGAGGAGGCTTTGGTGAGGTCTATTAT
GGGATGTTGAAGTCGCTACACTACCCTGAGATAGCAGTGAAGAAGCTCATCAGCTCCAAT
GATTACAGCGAGAGGGAGTTCGCGAATGAGGTACAGTCCATCGGCCAGATCCACCATAGG
AACCTAGTCCGCATGGTTGGTTACTGCAAAGACCGAGCTCAACGGATGTTGGTGTTCGAG
TTCATGCCAGGTGGTTCCCTTCGGAGCTTCCTTTTCCAGCCTCAGCGACCGATGTGGTGT
TGGCGTGCTGAGGCAGCACTCGGTATTGCCAAGGGCCTAGAGTACTTACACGAAGGATGC
AATTATCCAATTATCCATTGTGACATCAAGCCCGACAATATATTGTTAGATAACAAGAAA
AATCCAAAGATTACTGACTTTGGGATTGCCAGGCTTCTTAGTGACCAGCAGATGCACACC
ACGGTGACCAATGTCAGGGGCACAAGGGGGTATATTGCCCCTGAGTGGTTCCAAAGCGAC
AGGCGCATCGACACCAAGGTTGATGTGTACAGCTTCGGTGTTGTGCTACTAGAGATGATA
TGCTGCCGAAAGTCCCAGGAGCCAGTGCCTGGTCAGGATGGTGACGACTCGGTCATGCTA
TTTGAGTGGGCAGGTCAATTGGTTGGTGATGGCAGGACCGAGGTTTTATTTCATAGCGAT
GATGACGCCATTGAGGATTTGGTCAGAGTGGAGAGGTTTTTGTGTGTTGCTCTCTGGTGT
ATTGAGCAGAATCCTTCACTCCGCCCGACTATGCATCAGGTGGTGCAGATGCTGGAGGGT
GTGGTTGAGGTCGACACTCTACCAGCTCCTACAAGCTCCAACTGTTCATCGCCGTTGACC
TCTTCGGTCGACGAGAGCCCTCTGTTGTCAGGTGGTGCTACTCTTGCGATAGAGTGATTC
TTACCGTACTTTTTACGAACGCTAATTGTTTCACCATTGTGTAACTGTTGATGGTGTAGC
TACGTTTCTGTAAACATGACATCAGTCTTGCATTCTAGCTACATACATGTCTTCTAGTAA
ATGTCAGCATATGCTATGTATTCATCCATTGTGGTCCAGTTATGCAACAATCCTTTGGTT
TGAGCACTAATTTATCATTAGATTTTTTTTTTGACTCCTTTCTGATCATAAGATATTTTT
CTTGGTTGAAATTAACTAAGTGTGTATAATGGTTTAGGAAAACATACTACACAGCCAAAG
CAGCAGCAGCAGCAGAAAGATTTGCTGAAAATTTTGTCAATAGCTCACTCAGTTCTACCT
GCCAGAGAGCGAAGTATTAGTAAACTATTTACTAACTGAAGTTGGTTGGGCATTTCTCAT
AAGAACACAAGTCGTAATTCAAGGAAATGAATTTGGGTGCTTCACAGATATTTTGCCAAA
GTACAACCAATATAAGTTCACAAATCAAATGTTAGAAATGCTTATCAGCTTCCCACTCAT
TTGTCTAATACGGAGTACTAGATATTAACAGGCCAACAGTAGGGTGAGTGAATAATAACC
TTGGAGGTAAATATTCAAAATCCATTTATCCATTTGTCTTCACCTCATCCCAAATCGTGA
GAAAGTAACATCTTCTGCAGGCCAGTAAGATAAACATCGACTGCTTATTTTTTTTCAGGC
CCTTTATAAAGAAATTTACTCACTCCAACAAGAGTGTGAAGGCTACTACAAAAGTTCATC
AGTAAGATGAAACCTCAAACTTTATTCAGACGGAGTTTTGCCTTTGCCTTCAAGAAAAGA
AGGGGAGAAGTGTTATCCCAGTTCTAAGATAAGACTGAAACATCAACCTTGAAAAAAAAG
ACTGAAACATCAAGCCTTGATGTTGCCTAGCCAGAAAAGCATGGGAAACTGCACAACCGC
GAGGAATAGAAGAAAGTAGTGGTTCCTGCTAGGACGTCTCTCATAAGTCCTCGATGCACC
TTGCAGAACCCTCTTCATCGTCTTAACCAGGAACATTCCAGTGCGGATACAGAACCACGG
CATCACAAAATAGTATGAGTAGCTCCAGAAGATGCGGACAAGCATCGCAAGCAAGGTACC
AGCAAACCCATACCCAGCATATGCCACGATGTCTAGCAATGGCGATTCACCACTTCCTAG
TGAGTAAAGTAGAGTTTTAATGAGGATGACTTGCATAAACCAACCAAGTGCCCTCTTGTG
AACTGTATAGTCAGTGCATCTGGGATAAACTGGCATTTAAGACAATCAATATTGGAACAA
GAATATCCGGAACTATCAGTAACATTGTTGTTGTTGATGTATTCTTTTCCCTGCATTTCG
CAGACCGTTCCATGCAATGTTAGCCTAGACTTCAACAGAATCACAAACACAACTTTGACT
TTTGAGGCAAAGAGGGGAGAAATTTTGGTCCAAATCTAAACAAGGGGCACACAATGACCC
GCATGTGCGGTGCTGGATGGGAGAGTTTCATGGAGCAGAAGACTTTTGAGTGAGGGATCC
CTGGTCCATTTTGATCTGAACGGACCAGTTGTGAAAGTGTATCTTAGCCAAAAACCAACC
CCCCACCCCCCATTTCGATGAAGTCTGGGATCAACCTGTCCATGAAGCATTCTAACAACA
GCTTCTTGGGTGTGCAGTTTGTCCACCGTTTGACCAAGACGAACATTGAAATAGTTTTTT
TAGCAGTTTCAGTAGTGTCATGTGTTTCTTAGTTTAATTATTTTTTAGTTATACAGGCAT
TCAGCTTCTGTGTGATCAATCATCATTCATGTGTAGTTTTTGTGTTTTGACTTTGCATCA
ATATGCCACTTCATGAAACTTAGTTTTTCTTTTTCTTTTTTATGCTATGTTTTTTTATTC
TGAATCTAACAGTGGTTAACTTATTATCACAGAAATTACCATTCAAAGTAAGTCTTCAGA
CTGGGGCGGATGGCCTGTCTGGGACACGTTTGCAAACAGGGAGCATCACCACTGATGTGT
ACAAGACTTGCAAGGACGGTCAAATCGAATTTAAGGAAGGGTGGAAGGAGTTTCTGTTCG
AGTAGGACCTTAGTGTTGGCGATGGTGTGCTGGTCACTATCAGGCGCAGCGCATTTTGAG
GAATTCAAAATGATTATGATCATTAACAAGATCTGAGAGTTGCTCCAGTTTAGTCAGGAG
GCCGCGTGCACTCGACTTATTTCATCGTTATAGTTTTCTGTGAGTTGAACAATCTGTATT
TCAGTTTTGGGAAAAACTAATGGGAAGCGCCGCACCGTGCCCACCCCATGCCGCGGCACG
TTACGATACACGCACGCGATCGTGCGGTTAGGCAGCGTCGCACCGACCGTCCACCGTTTT
TAGCTCAGGAGCGGGGGGAACTGTTCAAATTTTGTGCGCTTTTTTTTTGCTTTTCAATTT
CTGTTTTCTTTCTTTTTCACACTCTCCAAATATGTCATATCATTTTTTCCTAGCAGCAAA
TTTATTTCCTGAATAACAAGTTATTTTTGTATGCTTTCCACAAATATGCAGCGTGATCAT
CATCAAATATGAAAAAAGCTGGGTGTATACATGGGATTTCGCTGATTTAAGCTACATCAC
ACGAGAGTTGTCTGCTAATTGTGCCGAAGTTGGGATAGAGTATCTGCAGGCAACCAACAA
AGTTGAGGGCAAGTTGATACTCTCACACTTCGTGTCCAAGTTCTTGTTGCAAGACGAGCA
TAATAAGAAGATAGTCACAAACATTTTCGAAAGGAAGAAGGACTTTGCTCTTACCTGTCA
GAACTTAGTAAGTAACTCATTTTTCTTAGACCTGACAATTTTTTTGGTTGTGTTTTTTTT
TCTCGCAAACATTCTGCGACGTAAAATTAATCACCCCGCAATTCACGTTACTTAGTTGTC
AAATTACAGTTACTTAGTTGTCAAATTACAATTACTTAGTTGTCAGAAATATACATGTTT
AGTTGTGTGAGACTACAAGTGATTAGTTGCCATGTTAAAAAAGGCTTACATACCATAATA
CAAATTGCTTACTTGCCAAAAATTAAACATGCTTAATTGTAGAGTACTAGTGCACTGAGT
TGCCAATTTGCCACTTAGTCGGCTTTTGTTTTTGGAAAAAATAGTTGGCAAATCACACGT
GCTCACTATAAAAATGTCCGACTTTATCACACACAACAAGTAGTTTTTTGTTGTTGGTCA
AACCTTTTGTCATCCGTGATACAATAACAAGTTGTATAATAGGACTGACGAAAAAAGATG
AAGTGTGGCAGTGCGTGAAACATGCATGTCTGTCGACCCTATAGCGTAGCTCGAAAAAGT
AGAGAGCGCTGCAGTAGTCATGTTAGTCGCAGAAATGAGTCGCTTTTTTATTAAGCCCAT
CCCGGACGTCTAGGTGAGCCGCCGCACGGGATGACGCAAGTGCACACGCTGCAAAGTAGA
TTTCCCCAACATTTCTGTTAGGTGATACGCCTTCCATACTCTGTTAGCACACACATTAGA
TACGGGTAGTGATATATTTTAATCTTTTTTGAGTTTTTCATCTATGCCCGCAGATCATGT
TTCCTGTTATTGAAGAAACTGGAGTGAATGAAGTGTGAGGACATCACTGATACGTTCTAT
GCATCAATAATACTGCTCAAAGGTTTGAGGCATTAGATTCACTATGCAACAAAACAAATA
TGGATCTTACCTGTCACGCAACCGTTGTAATGAAAAGAATTAAGGAAGCATGGAAGCTAT
ATTATTATAAGTCCAGGGTTCAGATTAAAAACTACGAACTCGAGATCATTGATGTTCCCA
AGCAGGCCACAAAGTGAGAAAATGTTTTTTGAATCTTTTTTATTTTTCCTTTTTTGTAAA
AACTGCAAATATCATTTTCACTCATAAGTTTGGAAAAAGCTATCTCTCACAAGTTTTTTT
AATGAAAAATAGGAGTGTGCACTGCGGCCTCTATATGCTGGAGTATCTTCATAAGTGGGA
TGGTGTGAATGTGTCTAAAATTCGGAAAGAGGACGTCCAAAAAATAAAGAAGAAAACAGC
CAACAAGTGGCTCAACGCTCCTTTCAACAAAAACCAAAAGTGGAAATGGCATCTCGACAA
CAACTCTGCGTGAGGTAAGTAAAAGCAATGAAATCAAGCAAATTTTTTAAACTATGTCAG
CTTTTGCTCATGTGTTCAGTTCTGTAAGAGTTTCCACTTTTCCTTTGTTCCTCTTGCCAT
ATCCCATTTTGTCCCAGTAGTTGTTCATTTTAATACACGATTGATAGGCTATACTTGTAT
AGTCACAGAACATAATAAAGTAGAGTTGGGAACAACGTTTGTATATGTACATACAAATTT
GACAACTAAAGTGGAAATGTCGTGCCTTGAATGCATGGACTGTACTCTCTTAAGTCTTTT
TAGATTTTTTTACTATGGACTGTACATGTAGCAACATCAATAATTTTACACTCTAACGAT
ATGCAGTCCGTGATAAAATCCAAGACATGTTTTAGGAACAAAGAAAGTAGTTCCAAATCT
GCATTTTTTATAAACTTGTAGATAAGTACTTGCAACCTGGCAACTACTTAGTAACCTGAC
AACTAAGTAAAACTCAATCTGGAAATTAAGCTTCCCTAAAATGATAGCCAGGTACTTAGA
ACCTAACAACTAAGCAATACTTAATCTGGAAACTGATCTTTTGCTAAAATGACAGCCAAG
TACTTAGAAACCTGAAAAACTAAGTAATACTTAATCTGGAAACTAAGCTTTCCTAAAATG
ATAGCCAAGTACTTAGAACCTGACAAGTAAGTAATACTTAATCTGGAAACTAAGCTTTTC
TAAAATGATAACCAAGTACTTAGAACCTGACAACTAAGTAATACTTAATCTGGAAACTAA
GATTTTATAAAATGAGAGCCAAGTACTTAGAAACTGACAACTAAGTAATATTTAATCTGG
AAACTAAGTTTTCTAAAAAGATAGCCACGTACTTATAACCTGATTAATCGGTGACTAAAT
GCGATTTTTTTAAACTGCAGCAGCCTACTTCAGTGCCAGATTATAGGGTACTTACTTGCC
AGTTCTAAAAAAATGATTCAGTTTGCCAAATATACGTGCTCAAATCCTGACAACTGAATG
GGTTGTCTTTAGGAAACTAAGTATTAAAAATGGACAACTAGATATGTTTTTTAATAAACC
AGCAACCAAGTGTTTGTATTTTAAATTAAGCGACTTAGTATGTCAAAGAGTTAAAATTAC
AGAAGACCTTTTACAGAAGACCAAGAAAGTTGCATATCACACAAAAGACACACATATATA
TCTCCATATATATATATATATATCAGAATTACATATATAAATAACATCTAGAATTTTATA
TATAATTTGAATCAAAATTACACAACGCATTCAGGAAAACATCTCTTCTTCAGTTTGGAG
GGGGGCGGGTTTATCCCTTGTTGAGCATGTCCTTGCATCATGTGTGTTTGATCCACACAG
TCAACAAGTCTTTTTTTTCTCTCTTCCCAATGTTCAATGGGTGCTGGAACGACTTCTTCC
TTTTGCGCCCTTTCATGTTTGACTTCTACGGGTCATGAATGATAGGCTCAGGAGCAACTA
CATGTGAAGAATGGTGATGTTTGTCCGAGCCATCAACCAAGGTAGAAATAGCATTTGTAG
CAGCATCCATTGCCCAAGCGTACGGACCCATAACACTCACGGATGCAATTTGGCCCTGAA
TTTGGAGGTCGGAAGCTGCTGCATGAGAAGAATGGCCTTGGTTGTTGGAGCCAGCAGCAG
CTTGGCAGTATAGACTCCTGGAGTAGCAGTGTTCGACATAGTTGTCGTTCTTGCTGCAGC
CACCGAAGCATTTCGGGCAGAATATGCACCTAGAGGAGCAGACTTTGACATAATATTTGT
ACTTGCAGCTGCCGCTGTAGCACCGTGGCCCAGAATGTTTGGCTCGGCAGGAGCTACATA
GGATGAACGCCCTTGGTTGTTGGAGGCAACAACTTGGGCAGAATAAACACCCGGAGCATC
AGGATTTGGCATAAGTGGTGCACTCACAGCAGCCACCGAAGCACTTCGGCCCTAAGTGGT
TGGCTTGAAAGGAGCTGCATAGGAACAATGACCTTGGTTGTTGGAGCGAGCAGCAGCTTG
GGCAGTATAGACTCCCGGAGTAGCAGTGTTTGACATAGTCGGCGCACTTGCTGCAACCGC
CAAAGCACTTCGGGCAGAAGATGCACCTAGAGCAGCAGACTTTGACATAGTGTGTGTACT
TGCAGCTGTTGCTCTAGCACCGTGGCCCATAATGTTTGGCTCGAAAGGAGCTCCATAGGA
AGAATGAGCTTGGTTATTGGAGCCATGAACTTGGGCAGAATAGGCATGTTGAGCAGCATA
TTATGACATAGATGGTGCACTTGGAGTAGTCGCTGAAAAAACTGGAGCAACATCATCCTT
GATTCTCTTTTTTTCCTGTTCTTTTGCAAGCGCAGCTAGCTCCCTCTTCATCTCTTTTAA
GTGTGTACCTATTATATTTCGACCATCAGATGTGCGGCACCCAACTTTAGCAAGTGAGGC
AAACTCATTCTTTATGAAGGTTGTTTTCATCAGAATCACCGACTCCTCACGCATCTCATG
CACCTTGCGAGGGACTTGTGATGACATATCAACGAGCATTTCCTCCACAAGCCACATCCA
TCTCTTGAGTATGTATGCCGCTNNNNNNNNGGTAACACCAAGCTGGACCATGATCTGCAC
CGTTCAAGGAAATAATACATAAGTCATGGAAAGAAAAAGGCAGATTTTTTGAGTCATTCA
AGTCAATTATGCATTTTGGAGAACCTAGCAACCCCCCAAAACAGCCTACAAAATCTTCCT
AGTAGGAAAACAAGTGGAGAACATGACAATTATGGAATACAAAACCCAGCAAGTCCCCAA
AACAGGAATATGGAAAATATGCGTATAATCCCCTTGAAAACTCTCCAGAAAATCCCCAGA
AATTTTTGCTTGAAGTTTAAATGAGTTTTCCCTCCCTTGTGGTTTTTACCCTTAGTATAT
GGCAACAGACGATCCCATCGTGCTCATACTTGCAACATTCACACATATACACCCCTTCTT
CAACATTTGCATGAACCTTAAAGGACTTGCTGCCATATGCCGGGACAAACTTTGCAATGC
AGTCAACCATGTACTCTTGGGCACCCGTCTGCTTACAGCTGTACGACAACAGTGACTGCA
TCTCCCCCTGGAACGTAACAAAAATATTGCGCGTATAGATACTTGACATTTGGAGCTCAA
TTGGGTTGTAACTCCACTTCCTAGCTGTTGTGATTGTTGTGTCTGCATCCTGCTTGCTCT
CAGCACACATTATCTTCTCTTGTATGGCAGCATAT