Contig Data
morexGenes
Links



Map Locations of contig_136922 (5494 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_136922

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5962 4 1051 bp AK363765 Available Available None





CDS Structure of MLOC_5962






Contig Sequence (5494 bp)

>contig_136922 5494 assembly3_WGSMorex_rbca.fasta
CCTTCTGTTTCTCATTTGGTTCGACACTCCTACTTATCGAAANNNNNNNNNNNNNNNNNN
NATACTTGTGGGTCATCAATGACCCACAAGTACAATGGATCACAAACATTCTTTGAGAGT
AGTACTTCATCCAAATTTATTGATTCGACATAACTGGAGTCAAAGAATATTTATACGCCT
TAGGAGTAGAGTTGTCAATTCAACCACACCTCAGAGATAACTTTTCTAGCAGCAATTTAT
TAGTAGAACAGTAATATGATAGTAGTGATAGTACTATTGATAAAGTAACAGTAGCAACAA
CAAGAGTAACAAGTTTGTAGCAAGTAGAGCAGTAGTAACTTTAGAAAAGGCAACAACAGT
AAACTGAAGGCATGGAGTAGCGATGGATCTTTATATGAAATTCGACATGTAACTATCACA
ATCTAGAGTGATACACAATAGCTCCAATTCATCAATCATATGTAGGCATGTATTCCGTAT
ATAGTCATACGTGCTTGCGATAAGAAAATGCATAACATCTTTTGTCCTACCCTCCCATGG
TAGCGTGGTCCTAATGGATACTAAGAGTAATACCCAGAAAAATATATTAACACATAGTGA
ATACATAAACTCCTTAGTTAAGTTCATCCCTGTCGATATCCCAATGTGTCACCTTGGGGT
TTAGGGTTCAGAACTACAACATGTGCATACAACTTGCAGATAAGATCAAGAACACAAATG
TATTCATGAAAACATAACATATTCAGAAATCATGACACTCGGGGCATAATGCCAAGCATT
AAGCATAGCAAAGTCATAGGAACATCAATCTCATAACGTAGTGGATACTAGGGATCAAAC
CCTAACAAATTACCACAATTACATATGAAATTTCATCCAACGCCCATCTACCTCGAGTAT
GCCTACAAAAGAATTACTCACACATGTTTTTGAACATCATAGAATTGTTGATGGAGAAAG
GTTGGTGATGACGACGAAGACGAATCCCTCTCTCTAGAGCCACGAAGAGACTCCAAATTA
GGGCTCCCAATGAAGAACGAGAGGTGGCAACGGCTCTGTGTCGTAAAGCGCGATAAAACT
TTATGTTTATTTTCTCTCAGAGGATGTGAATATATAGTGATGGAATTAGGTCCGACGAAG
GTCTAATGGGCCACAAGCTCAGGTGGCATGACCAGGGGGTGGTCGTGCGACCAACCCTTG
TGGCTTCCAAGTGGGGGCCCCTCTAGTAACTCTTTGCTCTAGTATTTTTTTATTTATTCC
AAAATAATTCTTCATAAAATTTCGTCCAATTCCAAGAACTTTTTATTTCTGCACAAAAAA
TGATACCAAGGTTCTGTTGAAAACAATGTTAGTTCGAGTTAGTTTCACTCAAATCATGCA
AATTAGGGGGGCAAAACAAGAGCAAAAGTGTTTGNNNNNGTAGATACGATGGAGATGTAT
CATGGCATCTTGTACTTGCCCTCCAATCGTTAACCTCTGCCTCCTTGGCCAGGAACATCA
CACCACGTCATCGCCTTGAGTTCTTGGTTGTTGGACTTCTTCATCGACCACAGATCAAGC
CATGAGCCGCAAGCTCCGCTCGTCCATGCCCATCTTGGAGATCTACTCTTCCATGCCCGG
TTCGAGCCTCTCCTTCCTTTTTGTTTTCCTCGGATATGAAAGTCATCTAGCGGCATGATA
ACAAGAATCAATAGCGGCAAGTAGCGTTGTTGCTGGTTGGCTGTGCGGTAATTAGCGGCA
ACCGGTGAAAAGTGGAAGATGTTGTATGTATGCATTGTAATTCTTGTTCTTTTGGCAAAG
AGGATTTCTTTGTGATTTACACAAACTCGATTATATATCGCAGTTTTCTTTGTTTGTGTT
TTAGACTAGATGGTACTCCCTGTGTCCCATAATGTAAGACAGTTTTGACATACTACAATG
TCAAAAACTGTCTTACATTATAGGACGAAGGGAGTATTTCTTTTCAATTTAGCACTCCAA
TCTAACTTGTTTGTTGTGGATGAGCTATCTAGCCCATCTGAGTTTGAGTCACGGAACGAC
CCATGGTGTTTAGAAAGGGCTAGTCCTATAAAAAAAATGAGGGGAAAAGGGCTAATCCCA
CTTTTTTTAGGTAAAAGGGCTAATCCCACATGATCTCGTGTTTTTTGTTGTTGAACCAAA
CACACCAACCATTGCTTTGTACATTCTCGAGGCCCAAGCCAACCACTTCCTTCATTTTTA
TATACAAGGCCACTATCAAAATTACAATTTACATATATACAAGGCCACTAACATTAATCG
ATGCAATATTAATGGTGTTTGCCTCGTAGTACTAGCAAAGAAGGACATTAATTATCCCTT
GCATGCATGCAGGAATGAGATCATTGGCTTGATATACATGAAAGAGAAAAATACACATTA
ATTTACACGGTAAACAAGGAGACAAGTTGTCTTGCAACATTGACTTAGAAGGCATGTAAT
ATGTGTTTACGACCTTGTATATAAAAATGGAGGGAGTAGCATTTTTTAGACAGGCCCAAC
CCAACTACTCGCATTTTTTAGACAGGCCCAACCCAATTAGCAAATTGCTCAAACCCCAAC
ATTCCTCTCCCCTGGGCGCTGGCGCTAGTGCATTCTCGAAGTACCGAAGTCAATCGGCGG
CGGTGCGGCGCCTGCACGTCGACGGCTGCCTTCTCAAGCGCGGAGCCTGCACATCGGCGG
CTGACCTGCCCTCTTACGCCCCACCTTCCTAGCTTCTTTTGCCCCGCGACGCCGGAGAAC
GCCGGCGGCTGCCTCTCTTGCTCCCGCACGCCGCACGCCGCACGCCGCACCAGCCTAAGC
TCTGCCGGCTGACTGAGGTGAGCTGGACAGGGATTAATTGCTTCTTCGGGCTTTTGCGGA
CACCCATCCGGAGGCCTGCAATTGAAAGAGAAGCCTTTGCTTCCCCTTCCCTCCTCGGCA
TCACTCGCAAACCTAGCTACTTGCCGCCGCCGAGGACGAGATGGCGCCACTCGCACCCAA
GCGCCGCAAGGCGGTACCTTCCCCTCCCCTTTCGCAGGCTTCTTCCGACTCCGGCAGCGA
CTCCGATCTCAACCTCCACGACAACTCCGACCCAGAGGACGGCTTCTTCTCCTCAAGGAG
CGCTGCCAATGACGACGACCAAGATTTCTCCGCCGTAACTCTCCACCTCCTCTCATTTTC
CTTTCGCTCACATGCTTAGATTGCTTAGTTATTTTGTGTCTGTCTCTCTTTGGTTAGAGC
GACGAGGGGGGCGACCACGAGGAGGAGAGCGACCATGAGGATGATGATGATGGTGAGATG
GGGGAGCTCGAGCAGGAGTATCGCGCCCTCCAGGCCAATCAACAGTAATGTTTCCCTTCC
ACCCGTCCTCTACATGCCTCACTTTCACACGGTTTACTTTACAATCTACTTCATGATCTC
ACTTATATTTATTCTCTTCTAGTTCTACATAAGCATATGTTTTTCTTTCACGCGCAGAAG
CATTATTCAGACCTTGAAACAGCACAGGGATGGCGATGTCTCAAGAGGCCAGGCAGTCAA
AAACCAAAAGGTATTATTTGATCTGCTTGGCTAACATGACATCTAGTCATGATCATGTGC
GATTGCGCAGCAATCCTTCACATTCATTGTATTTAAGCTTTCAAGCTATTAACCTTTACA
TCCAATTTCTGTTTACTGAAGGCGCTATGGGATAAGACCCTGGAAATGAGATTCTTGCTG
CAAAAGGCATTTACAACTTCAAACAAGCTTCCCAAGGCCTGTTTCTCTACTATGGCTGCA
ACATTCATCTTTGTTTATTCGTCGTAAAATGCACGATTGTAGGCCGCATTCTAATGTATA
TACTGTATTCTGTTCTTGCAGGATCCCACCAAGTCAAGGTTCTGTGGTCATGAACAGGAG
ATAGAGCAAGCATATGTTGATCTGTTGGACTCATCGAAACAGACACTTGGCTCCATGCTT
GAGCTGCAGGAGGTTCGGTCACCTGCTCATGTTTTTTTTTTTTTTTTGCTTCGATGCTAT
AGTATAGTCTATACATTTGTTAGTCCAGGTTTTCTTACTGCCCACAATATGCTCCCCAAA
ACTAACTGTAGGCTTTACTAGAGCGGAACCAGGTCGCAAAGGGTGTGAAAGGTACTACTG
TTATCCAGTCTCTCTCATTCTGAAAGATGCCTCGAAACGTTCGATAATCCTGACTTATTA
ACAGATACTGTGCCTAACTCAACTGGAGAGAATGACGATTGGTTGCAAATGCAGAAAATG
CAGACAAGGTAACCTTTTGCATTAACAGAGACTGTGATGAAGTACTGTGGGATATGCTCT
TCAATGTGTTACAGTGTCTTGCATAGCAGCAGATCCTTTGTTAATCAGCACATGTCCAGT
TCTGCACTTGTATACCAGTAGAATGTGTTTTGTGCTTTTATACTGTATCATACCAGTAGA
ATGTGTTTTGTGCTTAATAGTTAATACTGATCATCTAAATTCTTCCCTACTTCTGTATCA
TTTATAGTTTCTTAAATGCATTTCAGTTAGCGAATTGTTTATTTGGCGCCGTTAATTATT
TATTGGGACAATTACATTTGAGCCCCTAGCTGTGTCGCTCCCGTTTGATTTGCCCCTAGA
TTCAAAAAACCCTTGTTTTGTTTAGGCTCGTTTGCTCCACTTGTGCTTTTTGCCCTTTGA
CCTTTTGACCGTCACTTTGAAAACTTCATAAATAATTCATACTAACTCACAAAAATTCAA
ATAAGATATCATTTTTTTTGGAAAAACATCACCTACATCTGGATGTCATTTACATTCATG
ACAAACATGTTGGAAAGTCCACATCTCAATTTGAGCTCATATGATGTCAGCACGAATAGT
AAAATCCAAAAAAATTGAAAACAAATTAAAAAACTTATGAATATTTTTAGTGGCAAACAT
TGACAAATGTTTGGAGTGATTGCAAAGTTTCATCGGGGAATGAAATTTGTGGAAGTCGTG
GCAAAAAAACAAAATCAGCACTCCAAAATGCTTTTGTTTAGGAGCATCAATTTTGTTTTT
TCGCCATGACTTCCATCAATGTCATTCCAAGATAAAACTTTGCAATCACTCAACATATTT
TTCAATGTTTTCCACTAAAAAATTTCAGAATTTTTTGAATTTGTTTTCAAATTTTTTGGA
TTTTACTATTCTTAGTGACATCATATGAGCTTAAATTGAGATGGGAACTTTCCAGCACAT
TTTTCTTGAATTTAAATGACATGCAGATATCGGTGATGTTTTTCCAAACATTTCGATATC
TTATTTGAATTTTTCTGAGTTTGTAGGAATTCGTTATGAAGTTCTCAAAGTGACGCCAAA
CGGTCAAAGGGCAAAAACATAAGAGGAGCAAACGAGCTTGGACGAAAACGAGGGTTTTTT
GAATTTAGGGGCAAATCAAACGGGTGTGACACAACTAGGGGCTCAAATGTAATTGTCCCT
TATTTATTTTTGTGTGTGTGTTGGGGGGGGGGGG