| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
| No map location |  |
 |
Predicted Genes from contig_136919
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_5958 |
2 |
2308 bp |
MLOC_5958.2 |
Available |
Available |
LOC_Os03g21550.2, FRAME:-1, EVALUE:7e-164, 13103.m02584 protein eukaryotic translation initiation factor 2 subunit beta, putative, expressed |
CDS Structure of MLOC_5958
Contig Sequence (8759 bp)
>contig_136919 8759 assembly3_WGSMorex_rbca.fasta
CTTCATCTCCTTACTATCATGATGTAGTTCACTTGATCGACAAATAAATTGTACTGTCAG
TTTTAGAGTCCAAATTAAAATCATCAGACTGCGCTATGTATTGGATATTACTTTGGTTTT
GAAATATAAAATATTTTGAGCTTTTTGAGTAAACAAGGACCCCTTATTGTTGTCTTGCCC
CAGGGCCCGTATATCTATGGCCCGGCCCTGCTCGAACCGAAGTTATTTTGCCCTCTAGAA
ACTCAGCGTAAAGTACTCCATTTTAAGATACATGAGTAGCCCGTCAACGAGGATAACCCC
TGGCCTCTATCGGTAGACTTCAAAATGCACTGTAGTTTAAGAAAAGTCTAGCAACTTGCT
AATGAGAATTTTTTTGTCTCGAACGGAAGTTATTTTGCCCTCTAAAAACTCAGCGTAACG
TACTCCATTTTAAGATACATGAGTAGCCCGTCAACGACGATAGCACACTGGCAAACCTTA
TTGCGTGTAGCAAGCAAATACAAAGTCCTTCGTGTTTTGCCAATAGCATTGCTACTCGCA
GCTAAAGAATGATATTGTGAATCCACTAGCACTGTCTGGACTGTGTTGAGGCACGCAATG
CAAGGAGGAATAAGGAAGACGCTGATACAGTACAACACTAACGATTGTCATTGTGAATCC
ACTAACACTAGCCATCCACAGAACAAAGCCGTTCCGCTCGGCAGCTGGACTGCGCTGGGC
AGGCAGACGCAATGCAAGGAGGAACAAGGAAGACGCTGATACAGTACAAGACAAAATCAA
GGAAGGCCAACAATATTCTCACCATGTGGATCATGAGCCGATTCAGACAAGTCGTAGAAA
CAATTGATAAAGTCGAGGCTCAAAATCGGAACCCACGCACGGGACAAGCACCGCGAGGTA
CCCCATGGCCATCCCATCCTCATCCTCATCCTCATGACGGAAGGAAACACACATTATCTT
CAGCGCCCGCGCTTGAGCGACTTCTCGACGGCGTCCATCTCCTCGAGGATGCGGATGCGG
CGCTTGTTGGGGATGGGCGCGGTGGGGCCGAAGCTGATGTAGTGGCCCGACACGGCGTTG
AGCGCCGAGTACATGTCCCGGAACGACTGCCGCCCCAGCAGCGCCTTCTCGCGCCGGTAC
TTGGCAACCCACGAGTTGGACATCTCCCGGAGCTCAGTCACCGCGTCCGCCACCTTGGGG
TCCGTCTTGTCCATGCTGATGGTCGACCGCACCTTCCCGATCACTTCCGTCGTCTCCGTC
ACGTACTCGTCGTCCGAAGCCGCACGAGCGCGCTGCGGCGACAGCGCCATCAGCAGCGCG
GCTCCCACGCCGGTGCCGGTGCCGGTCATCACGTCCCGCCTGCTGCTGCCGGTCGCGTGG
AGTGCCGCCGTCGTGCTGGAGCGAGCCGCGGGGAGCGGCTTGGCGACGGCCGCTGCTGCC
GAAGGGGCGGTGAGCATTGCGGGGACGGGAGACCTCATCTCTTTCTTTCTTTCTGCTCGA
GGATGCGGCGCGGGGAGAGGAGGTTGTGCAAAGGGAGGCAGCGAGCTTCGCTCCAGTCGT
TTGATAGCTTAGGTCAGGCACAAAGGACACGTCGGCTTATCCTCTTATCACGACCTGTTT
TCTTGTGAGGCTGTGTTTCGATTGCCGGGATTTTTCTTTCCTTACCAACGGGGCTGCGTG
GTTGGCATTCCTTCCAACCGCCCAAATGGCTACCGTACATCCCTCCATTACTGGGGCGTT
TGAACGAAATAATACATATCAACTCAAGCAGATCTCACTAACACCAGACAAGCACAAAAG
GCAAAGGAGCCAGCAATAGGCAGCAAACTTAGATCCTCTGAGATAAATAGAAATTCACAG
CAGCAGCAGCAGCATTCATATTCATAGTACACGAAATAACAAAAACCACAAGGCGGTCTA
GGCACAGTATAAGCTGGACAATAAAGATTGTTTGTAAATCGGCAAATTGTTGGATTACGT
TGACAGAGCAGCTTAAGTTCCAGCCTTCCGACGCCCAACTTGCGCCACAAATCCAGCCTT
GATAGGAGCAACTGACCTTGACGAACCACACTGATCAAGGTAAATAAATCAAATCAAACG
TTAGTGTGTGCATAAGAAAATCCTAAACTGCACCAGATCGAATTAATGGCTATGATTCAT
CCTCAGATGTTGCATTAGTTCTCATGAGGTTCGTTAAACAATGTAGGCAATAAAGGTTAG
CACCTTATCACTGGTAAAGTGGCCACAGAAGCATATTAGTTTTTAGCTAGAGGCAGGCAG
GTGAAAAACAGAAGAGCCAAAAGAGACATGATCATATAATAACGCACAAGCCTCAGTTGC
TGCGATTATTATCACATATTTGTCAAACAATGTAGGCAATAACTTGACTCATCATCAGCA
CTACCCCAGAAATGCAAACTAACATCTGAAATCTAGGGCAAACAAAATACTCCCAAGATT
GGTCAAACCGTTGCGGTAGCCCTTTTGACCCTTTGGGCGTTGGAATGGACAAGAACATGT
TCCATCCTCATACGCCGAAGGGTTGCCGACGTTCCATCCTCAGACATTGCATAAATTTCT
CACAAGATTGGTCAAACAATGTAGGCAATAAGGTTTGCAACTCATCATAGGTAGAAAGCC
CACAAGCCACAAGTATTGGAATGTAAACGTAAATGACAAAAATACAAAAAAGAAGATTAA
TTGATTTAGTGCATTTTTTTACATCCTCAGACGTTGCAGAAGTTTCTCATAAGATTGATC
AAACAATGTAGGCAATAAAGTTCGCAACTCATCATAGGTAGGCAGCCAAGGAATGACTAC
TAAGCAATAAATAACACATTTAGCTAAAAGAATAAACACAAACGGAAGAACCATCGTACT
GAAAAACCTTAGATGTTAAAATTATTGCCACAAAATAATTTTCAAATAACGTAGGAAAAA
TGATTCTGCAACTAATCATCAGCATAGAAGACTAGGTCAAATAAAAGGCAGTGTTCCATC
CTCAGAGGTTGCAGAAGTTCTCATAAGAGTGATCAAACAATGTAGGCAATACTGTTTGCA
ACTCATCATAGGTAGAAACAAGATATCCTACTAGCACAGGAACCACTAGTAATAACTAAT
GCAAATGCAAATAAAACGATATTAGTTCAAAACAATAAACAGGAACACGAAGGACCCATG
ATACATCTTTTAAGTCTCAGATGCTTGTAAAATTATCAGAACCTACTGTCAAACGTATCA
AATAACTAAGCAGCTTATCATGGAAAGACCTCCATAAGTGGCAAACAAACATAGTAACAC
ACACTCTGCAGGAAGTATGACACATTTATCACACAAATGCTTGTCATATAATGCAACCTG
GCAGCTCAAAGGCAAAGTTGATAAAAAGTACGACATGACAACAGAGACAAATACTATATT
GCTACTCTCGTGATGATTCATCCAAAGGTAGGAAGCGGAAGTCAAAACAGTTGTAGGGAT
AGAGTCAAAACAAACATAGTAATACACACTCTGCAGGAAGAAGCAATAAACCAATACGAT
GTTCTCATAGTTACCACTGCCACTAGTTTGCAGTGGATACAACCCCTCGAAACAGTTGTT
GAGAGCCAGAAGTCAGCATAATTGTAAAAAAAAAATGAATGGTCTAGATCTAGCACTAAA
GATCATTCAGACAAATGTCTGAACTGAAAGTCAGTAATTGTAGAAAAAATGAATGGTCTA
TATTTCCCACAGTAATTGAGTGTAACAATCTTACTTGTTCACAACGAAGGAAGAACAACC
GATTCTCCTTGGAAAGGATGGTATCTGGGCTCTTACATCCATTACATATGACATATTCAT
CTGAAACAAGTGAACGTGGAGACAGCAAAAGTTAGTCCATTGAGCTTATAGGAAATCAAA
AGCAGCTGAGATTACTATTCCACGTCCAGAAGCTCTAGGTTATGATTGGACGATCATGCC
ACAAGAAAAATATAAAGCTCATTCACAGCAGGTGACCATCATACTTCATACGCCATAGTT
ACGTCTTTCTTACTGGGGCCATTAGAGATTGGGAGTTAACTTGCAAGGATTATTTGGCAT
CATGGTGCCTTTTAATTTCAGATAAAACTACCAACCTTTATATTCAACGCAGAACACTGA
AGTTCAATGCCTCTTTAATTCACAGGATTTTGAAAACGCAGGAATAGGAAAACTAGAGGG
TTGGAGTGGCATGTTCATTTGAACCCTATATGATTAGTAAGGAGTGTTTGATGCCAATGG
AAAAACAAAGGAATTGTAAAAAGAGATTGGAGTGGATGTTAGATTTCCTATGAAATGTAG
TACAAAAGATTCCATAGGAAAAGTTCCTATGGGATTCAATCCTATGAATCAAAGGACCGA
TGTAGAAAAAAATCCTAAGGATTTCAATCCTCCAAAAATCCTATAGAATTCCTTTGAATC
AAAGGAGCCCTAAAGTTGGTACGATTCCCTTGATTCCACAGGGTAAAATGGCCACGCACA
ACAATAACTAAACCTTAAAAATTGAAAAATTGAAAACAAAAACAACTGTAGTGATTTTTT
AGCAACACAGCTGCAGGCTGAAATATTTAATTTGATGTTATGCTTACACGTAAAAAGCCA
GGACTTCATAAACTTTAGCCAAAAAGGAGCAGAAACTAGGTCAAGGAATAATAAGGAAAC
TTACTGATGTATCTCCTGAGTATAGCTTCAAAGTTCTTCGGGGCAAATCTTCCTTTGATA
ACTAACCTTTGTTGCCCATCAAGGGATCCACTTGTTCCCATCTCAGCAAGTAAAAACATC
ATCACATGTTCAGGTTGCCTATGCATTCTGAAAAGTGGAAATATCACTTAAGTTAGCTCA
TGATAGCCTTACAATTTTCAAATCAAATTTAAAATATTCAAATAAAACAAAGTAACAGAA
AACAATATCATATGGGGCAAAAACAAAGAAGAATTACGTTTTGCACAAGTCCATGAAGTT
CACAAAAACTGTCTTCTTTGTGCCTTCCCTAAGAACTTGAGGAGGCCGCATAACTGTTCT
TCGTCTATCACCAGCAAGATCTGGATTATTCTCACGCAGGATATTGAAGACTCTGCCAAG
CAGCTGTAACCAAACAGCTTGATGATTAGATTTCACCAAAATGAAACTGAGCACTATCCA
ATATTCTCGTCATGTACCAATAGCATCTAATAAATAAATAACAAAGAACTAAATCAAAAA
GCACACAGAAAGAACTTAAGAACGCTTCTCAATATGCACTGTAAAGCAACTGAAATGAAA
TGATTAAACAAATGATCTTTAATATTAGTTTGTTCGCAGAACTAATGGTCTGTCATTTGT
CAACATTCAATAATAGGATAGTAAAATGTTAATTAAACAGACATGGAAGTACAATTACCT
CATCGTATTTGTAATCTCTATCAGTTCCTTCCCATGGGTATTGGGTTGCTCCACCCAGCA
CAATCCCTTCTCCTTGTTCATCCTCTCCGACTTGATCATCTGGACATTACATACATGCTC
AGATACAACAGCGAACGTAATGAAGATAAATAAAATACTGACAATCAATATATCAATATA
TTTACCAAGAGTGTCTTCACCATCTCCAGCCTCAACAAGCGATGGATCAAGTTCCACCTG
AAATTTGAACATCGGTGAGTTAGAGCAAATAGCAAGACAAAACTGATAGTCCAAACAGTA
TTTTCAACAGTGATGAACCCTGAGGCTTGGGCATTGTAGTGGCTTATTGCATTGGCATCT
CATTAGGTTTGGCATGAGAAAGGAGAACATGACAACATAATCTAATGTCATATACTCCCT
CCGTTCCTAAATACAGGTCTTTTAGAGATTTCACTACGGACTACATACGGATGTATGTAN
NNNNNNNNNNNNNNNTAGATTCATTCATTTTGCTCCGTGTGTAGTCCATAGTGAATCTCT
AAAAGGACTTGGGGAGTACAAAATAGATAATAGACATCTCACAACTTTTTCAAACAGCAT
TGGAAATAAGCAAAACACAGCAGAGGCACAAACTCAGCATAATGAACTCACAACTTTCTT
CTTTTTCTTTTTCAATCCCGCGAAGCTTGGCTCGCCAGATTCAGTGACTGAAAATAATGC
AGAAAACTTTCAGCAACAACAGGCAGCAGATAATGAGATCTTTTTTTTGCATCAATACAC
AGACCTGACAAGCCCTCTGTCTTCTCTGCCAGCTTATCAACCTCATCAGCTGGATCTTGG
ATGACGACCTTCTTCTTCTTCTTCTTCTTGGTTGGATCAAAAGGTGCAATCTGCAAAACA
TCATAAACATTATCAATAAATGTGCACAAGAGACAGGAAATACAAGCATGGCACAACAAA
TATATAAAACATTGGAATACAACTATTTGGAACCAAACTAAACATAATACTAATACTAAT
AAACAGTGAAGCACACTGTCTTCTTCCCACCTCTTCATTCAATGAAGGGATTCCCCTACT
GTTTGCCCGTCAAATAAAAACAGTGAAGTTATCCAGTAATTTCAGTACAAGGCAACATTA
TGGTGACATATAATTTCAAATGTTAGCATCACACTTTTGTTTCCATGATAGTCATTGGCA
GGGATGCATAACAACACCAATATCTCCAACATGAATTGTTTACCTGGTCTGATGCAAAAA
TCTAGGTCATCTGATAGAAAAATCTACTTACAGCATAGGCAGACATTAAGAGTTCAAATG
TCCTAAAAAATCACGTACTACTGTTTAATGCTACACGAGCTTCAAATCCTATGCTTAATT
GTTAAGTCTCGTACGTTTAGCAAATATAAGAATTGCTGCCCGTAGAGCGAACCATGGCAG
TACCGCATCTGACTACACGTCACACAACCACCATTGGCTTAGCAGCTTAAATCGCTCTTG
CAGATTAGACATCTTCAACCAAAGCATACAAATCGACAGATGGACCCCATCGTCTCGAAT
TCACAAACCAGACAAACAGCAGGCACGAAATTATATCCGTTCCCCTTGGTTTGGCAGCCT
AGTCGCCGTCCAAACCAAAGACGAATCCGCCGAAACAGACGTGCAGAGAGAAACCGATAA
GAGAGCGTTTCACCTCGGTGGCCTCCTCCTTCCGCTCCATCTGCTCCTCGTCCGCCATGG
TGACGCTGGCCTTCTTCACCCCCTCTTCTGCTGGCGGCGCGACGGCTCTAAACCTAGAAA
GGAGGACGCAGGAGCCGGATCAGATCGGGTTGGATGGGAGAGAGACGGATTCTCGGGTGA
AAGGGTTTCCAACTCTTACAGCGAGAGGGAGAGGCGACGGCGGCGGGGGCGGGGCTCCGG
GTAGGGTTTCAGTCGTCCAGAGCTCTTTCTCTCTCCCACTTCTTTTGCCAGGCGTTTATC
TCAGACGAGAGACGATGGGCCGTATTTGTAGACCCTAGCCTGACTTCTTTTTTTCCGGGC
AACGGAAAACCTAGATGCGGCCTTGGCCTTCTTTTACAGACCTTTTCTTTTTCAATAGAC
AGTATGCTTCAAATTCAGTTCTTCAAAGAAAAAAAAAGTATGCTTCAAAATCAAAGAAAA
ATGGTTAATCGATAAATACCGCTGTAATTTTTGTGATTCCCAGAAATACCACTACAACAT
TTCTAGAACTTAAAACGTCACTTCAATTGTCACATCCATAAATGTCATTGCAGACATTTG
AGCTTGGTTCTAGTCAAAACATGACAATTTATTTATCTTGTATTTCCCCCAATGATGAAA
TCCCCCCCCCCTCTCCTAAAGAAGAGAAAACGAATCCTAGTAGATTTAGGTCAATCCCCT
CGATCCAATTCTCTTTCTTCCTCCTTGCACGCTCATGTCGTTGTCACCCCGCATCTCCAA
TTGTCATCGTGCTCATCAGCACTACTTGATATGTCTCAAACATATGTTTTCTAATTGTTT
TACGCTATTATAATATTTAATTTCGAATACTTTTTATACCAAATTATATTATTTTTCTCG
AGTAGCCTATTAATTAGGTGCCCATAGTTAGTTGTTGTTTTCTGCATGTTCTCGACTTTT
TAGAAAATCCATGTCCACATAGATCAAAAAACGAGTTGTTGTTTTGTGCATGTTGTTGAC
TTTTCAGAAAATCCATGTCTACAGAGGTCAAAAATCCGGAGAATGTAATATGATTTTTTT
GCATCATGAGGAGTCCAGAAAGTGTCGAGACCTGCTAGGGGACCCACGTAACTAGGTGGT
GTGGCCACGGGTGGACCCGCACCACTAGGCCATGTTGGGCCATGTGCATAATCTCTCGCC
CAGTCTTTCACCTATAAATCCTAAAATCACGAAACACTTTGTACCAAATTTCTTTGATTT
TTTCCGCCGCCGAAAGTTGTTGCTCTAAAGAGATCCGATTTGGAGGCTTGTTCCGACACC
ATGCGGGGGAAGAAATCTATCATCAGAAGCTTATTCATCAGCCTTGTTGCTTCCATGACC
ATATGTGAGTAGTGTTGAAATATACCCTAAAGGCAATAATATTATACAATTATATTTCCA
TATTCATAATTAAGAGTTTATATTCTATGATATAACTGCTATGATCCTCGAATATGCGAT
TAAGTGGAAAACTCATATGCACGTGTGGAATGATAAATGGTTAAATAGAGATCCCTAGTC
TTGCCTCTTAGACTTTCTCAAGTGTTGTTGGTGATTGATGACCCACAAGTANNNNNNNNN
NNNNNNNNNNNTTTCGATAAGTAAGAGTGTCGAGCTCAACGAGGAGCAGAAGGATCTGA
