morexGenes - Barley RNA-seq Database

Contig contig_136897

Source Contig contig_136897

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_136897 (6288 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location

Predicted Genes from contig_136897

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5944	1	872 bp	MLOC_5944.1	Available	Available	LOC_Os10g39450.1, FRAME:+2, EVALUE:3e-16, 13110.m03614 protein RING-H2 finger protein, putative, expressed
MLOC_5943	1	1495 bp	AK249213.1	Available	Available	None

CDS Structure of MLOC_5944

CDS Structure of MLOC_5943

Contig Sequence (6288 bp)

>contig_136897 6288 assembly3_WGSMorex_rbca.fasta
GGGGGCGGCGGCGGCGGCGGCGGCTAGGTTTCCGCGAGCAGGCGCGCCCTCAAGGTAGTT
CCTCCTCCGTCCCGTCTCTCTCTCTCCGCCCCTCCCGGTACGGGCTTACGATTTTACCTG
GTGCATTCCGACGAACCCTGGTCAACATGGCGGCGCCGCCGCTTCAGATGAACCCTCACG
GCCGGGTGAGGAGGCAGCCCCGAAGCGAGAGTGACTATCTGTTTCGAGATTTTTGGGTGT
AGGCAGCCGAATGCGGCGGCGCGGCTCCCCGCGGCCGCGGGCGTGGTGGTGGTCTCCATG
TCTCGGGGTTTTCGGGCCCGAGGGGGTGGTGGTTTTCGGGGTCCGATTTTGCACTCCCGA
ATGTGGCGGTGCTTTATTCCTTTGCTCTCCGATTTCGGGCTGGCTTGCGCTCCCGCTCCC
GCTCCCGCTCCCGCTAGGACTCAGATTTTGGCTGTGCTTGTCTGGCGCGAGGGATTTTGT
TTTGTTCTGTTTTGTTTCGATTCCGATCTCTCGAGCTCGAGGTACTAAGTACTAGGTAGC
AGCGGCCTCCCGGAGTTAGATTTTAATATCATATCAAGGTTTGATTCCGTGCGTGTGCGT
GTGCGTGTTGTAATGTTGCAGGAACTGGTGCGTGCGCGTGTTGGTTTCCTCTCGAATGTT
TGTCATTAGCGCCAGTGCGATGGATGTCCTGTTTGTGCGTGCGGGCTGATGAGTTTTTAC
CACTACCAGTAGTATGTAAGTATGTATCACAAGATGAAAAACCGTCTTGCTTGCTTGCTT
GCCGCTTCTGATCATGACAAGGGAAGAGATTTTCTTCACAGTGGCGTCCATTTCGTAAGA
TTCGTGTGTCGTGAATGTGATGGGATCAGTTTCAAGTGCCAGTTTGGTGGTGGTGGTTTG
TACCCTTCCTGGCTTGTTTGTTTGTCTGTAGCATTATTATGGGCACCGGATCAACAAGTA
GTAGTATTGTTTTGCTGTCTCTGCTGCTACACTACAGTATTGCTAGAAGAAGAAATAGCT
ACTAATTCCTGTGCTTGCACTTCCTGATGGAGCTTCTGCATTGTATTGGTCTGGCTGATG
GAGCTTCTGCATTGCATTGATCTGGCTGATGGAGCTTTTGCCTTTCATTCATGTTCCTGC
TGGTGCTTCTGTTCCTAATCGTCTGCTTTGCTTCTTTGTTTACTGCAGTGCTAGAAGTAA
TACTGGTGTGTGAGGGGGAGGGCGAGGCGGCGGGATTTCCGGGAGCAGGCGCGTCCTCGA
GGTAATTTCTCCTCTCCTTCTCTCTCACCGGTTCGGGCTTGCGATTTTACCTGGTACATT
CCGACGAACCCTGGTCAACATGGCGGCGCCGCCGCTTCCGATGAACCCTTGTTTTGTTTC
GATTTTGATCTCTCGAAGTGTAGGTAGCAGCAGCCTCCCGGAGGCAGATTTTACTATTAC
AAGGTTGGATTCCGTGCATGCGCGTGTTGTTGCAGGAACTGGTGCGTGCGCGTGTTGGTT
TGTTCTCGGATGTTTGTCATTACCGCCAATGCGATGGATGTCCTGTTTGTGCGGGCTGGC
TGATGGGTTTTTACCACTACCAGTAGTCCAGGAGCATATACTGTCTTGCTTGCTTGCAGC
TTCTGAGCATGACAAGGGAGGAGCTTTTCTTCTTCGTGGCGTCCTTTTCGTAGATACGTG
TGTGGTGAATGTGATGTGAGTTTCAAGTGCCAGTTTGGTGGTGGTTTGCACTCTTCGTGG
CTTGTTTGTTTGCGTGTCTTGTCTTTGTTTGTGTGTTTGTAGCATTATTATGAGCACCTT
ATCTTATGGATCAACAAGTACTCCCTCCCTTCGGAATTAGATACAAATGAATGTATCTAG
AATCAAAATACATCTAGATACATCCATTCCTACGACAAGTATTTCCGGACGGAAGGAGTA
GTTTTCTAGTAGGAGTATTGTTTTTGTGTTCCAAAATAGCATCTACCTTGGTCGGTGTTC
TTGTCTCTGCTGCTACACTACAGTATTGCTAGAAGAAGTAGCTACCAGTTGTTTCTCAAG
GTTGTTTGTTTGTTAATTTTTGCACTTCCTGATGGAGCTCTCCATCTGCATTGCATTGGT
CTGGCAGATGGAGCTCTTGACCTGCATTCCTGTTCCTGCTGTGCTTCTGTTCGTGATCGT
CTCCTTTGCCTCTTTGTCTACTGCAGGCTGCAGCACAGTACAACTCGCAATGGCTGCTCC
TGTTCCGGCTCCTCTGCCTACGGTGCCCTTGATTAACTGGATGCCGTTGCATGAGCGTGC
CAGGCCGTCTGTCTTCATTATTCTGCTGACACCGTATGATCAGACGACGACGAGAGATAC
CGCTGGCTATGTGGGAACCAAGGATCCGGAGGAGCTCAATGAGATTTTCAAAGCAGAATG
TCACACAGAAACGGGTATTGCCGCAAGGAGACGCGGTGACTATTTGTACATTGCCACAAG
TGCTCACATTATTGACTTCCTTTATCAAGCAAAGACACACCCAATTACAGTAGAAGAAGT
GAACAAGCATTTTGAAATTTCAGTAACCTGTTCCCATGCCGAAAGTCAGTTCATTGAGCG
AGGGTTTGTGGGAGAGCGGACATACACTCTGGCAGAAGTCTGCGGAATCAACTGTTCCAT
AGACCTGATGATGGTACGCGTCGATCTCAGAGAGCTGGCCGTCAGGACAGTGGGGGAGCG
GCGGAGGATCCCATGCACAGCGAATCACCCACCTGTGCAATTCAGCACCAGCCGCGCCGA
GGGTACCCAGTGCATGATGTACTCCTGGCCGGCATTCCGTCCTTTCACTATGACCACGGG
GCTTCAAGGCCCGAACCGAGGACCTGTGGCTTTGATGAGCAGCAACCCGATTGGGTACAA
CTTGGAGCTTATTGAAGCATCTGTTGGAAGCGAGGCTGGGTCGTCTGGAGCCCCCCTGTA
CAATACCAATCAACGGGTGATAGGCATTTGGCATGGAGGGTCCAGCGTTCACTCGCATTT
CATCCCATCAAAGTACATTCTGAATTTCATCAGGAACAACAAGAACTGCCCCCTTCCGAA
GAGTCAGGATCAGCAGGATGCCCCTCCTCACAGAGATGGAGACGACGAGCGTGATCCAAG
TGGCAAGCCAGGCACCTCCAATGCATCCTCCAAGCGTGGTCCAAGTGGCAAGCCAGGCAC
CTCCAATGCATCCTCCAAGCGCACCCGTTCTGCTGTCTAGGACAAGACCGTTACTGCTCT
AGCCTGTTGACCAAGGGGATCATTTGTTGATTGATTCCTCCGGTGTTTGTTGCCTGATAC
CTCCGACAGAGTACACATTGAGCTGAGAGGACCCGTTCTCTATAAATTTTGGTCACTATT
TATTAGTATCCCAGATGCTAAAACATACCCATGGTCCAGTGCATGCATCATATATTTTGT
CAAAACTGCCGGGTTTATAAAGTGCTAGGCTGCCTCCTGGTTTAGTTTCCACCATATGCA
TGCCATATTTCAAAGACTTATCGTTTGGCTTGTCTAAACATAGATAGCACTCATGTGGAT
TGTAATGTTAGGTTAGAATTAATCAACAGTGAAGATTGGATAACTAAACTTGCTTATCCC
ATATTCTTTTTTTGTGCGTTTGTCCATGGTTAAGAGTCAATACCCCTTTGTTTACATTAA
ATTTTTCAGTTTCCGTTAAGAAAAAACAATGGTATTGTCCATGACTAGTAATGAAATACA
TCGCTAAATTTCCTTAGGCCCTGTTTGGATCAGCGTCTCCGTTTCAAATACCTCCGTAAA
AATATACATGCCACGGTCGGTCGTTTTGTTTCCCGATGGAAATTGCTCATCAACCGGTAA
GTTACACCTGTAAATAAAACACCTTCGTATTATTTTACACCCAATCCAGGCGTGACCTTA
CTGTGTATATATGTGCAGCAGGCTATACATGTTTTCTGTCTACTAGGTTAATAATCTTAA
CTGTTGCTATATATCTTCCATGTTCAGAATCCGAGGTATTGTCATCTCACTGGAAGATGG
CACATTCAAGTTCCTTGGCATAACTAGAATTGTCAACGGTGATGTTCCACTCACCGGAAC
CTAGGGTTTATAAACTGTTTACTGAGATATATTGCTAATGTACAACATTCTCTTAGACAG
TTATGCCTGAACTAGTCACTCGTTCTGTGTGCCGAAGAACTGAGCTGTGTATCTTGGGCT
TAGCAGATTACAGGTGCTAGTTAGTTATAAAAATATTATCGGCCCAACAACTCAATAAGG
GGCCTGATAGAATAAGCGCACCAGCTATTCTGAACCTGGTGACTGATTTTGTGTTCTTTC
CTGGAAGACAAGGCTGCAATACCTGTACATGATTATTGATGCAGTCAGACAGACAAATTG
AACAATGTGATGCCAAGTATGTATGTAATAGATGAATGATAGAAATCGTGAGGAATTGGT
CTTTCTTTATGTTGCTTCATGTTTTGCCTACTCATGATAATGTGTGAGTACTTCAGTTTC
AATGAAGCATGGATGTGAATTTTAAATGCTAATGTGCAAAATCCTCTCAGAGTAGTAATC
CAACACCAAATTATGGGGAAGGGTTATCAGCAAATAGTACTAGTTAGTGCATTATTTATT
TAACAAAACTCCTTGTCAATATTGTTAGAACCTACTCCCTCCGTTTGGAATTAGTTATCG
GTTTTGCCCGTTTCAAGAGATGCGATAAATCGAACATTTGAGCTGGTCAGGTTGCAGATA
TCTTTACCAAGCCACTATCTCGACATCTCTTTCACAAGTTCTATAGCGATCTCAATCTGG
TAGAGACCGGCTGAGATCGAGGGGGCATGTTAAGATATCTTGTATATCACGTTAGCAGAT
ATGATACTATTGTAATTAGATCATAATCCTTGAGATACATTTTCATTGAAGTGGAATTTC
AAATTCCCTACAAGTCAAATTAGATCAAAATTCTCTACAAGTCAAATTTCACCTAAATCC
CCTCCGATCCTCTCCAATCCCCTCCTGGAAGGGATTAACCGAACGAGGCCTGACGGTGCG
CACCAGGAGTGGGCCCGGAGGCCCGCCGAAGCTCCCCGTCACTACCATTCTTGATTCTTC
CACCCCACCCCGCCCTGATCCAATGACCCGGCAAAGAACGAACCGGCCTCCGGCAGAAAT
CAATGGCGTCGGCGCGCCGCCTTCTGCAGACCTACCCCTGCCAGTTCCAGGCCATTGAGC
CTGTTGCTCTACGCGCTCCTCTGCGTCGTTGGCCTAGCTGCCCTCACCGGATGCGCGCGC
TCCCGACACGGCGAGGCGCGTCGAACAAGGGGCTCAAGAAGAGGGCGCTCATGGCGCACG
AGGACGCTGTGGCCGCGGCCGTCGCGTCTCGCACGGGAGGGGGAAGGTGGAGGAGGGGGC
CTCGGTCACGGCCGGGAGGAGGAGGGGATCCTGTCGGACTACACCATCTACCTGTCGGGG
TTCGACGAGAAGGAGGAGATCTGCATCCTGCCGCAGTGCGACCACGACTTCCACGTCGCC
TGCGTCGATGCCTGGCTCCGCGCGCACTCCTCCTGCCCTTCCTGCCGGCGCGTCATCGTC
TTCATCGAAGAGGTGCCCCACGAGATACAACTTGGTCATGTTAAGTGGATTTCCACTTAT
TCCCACTTAATCTATGTGAACTTTGGTGGGATGGCCACCTTTACAACACCAAACTGTATT
GGGACTAGGTGGATTCTGGTGGGACTTTCATCTATAGTCTCACCTTTGAAACACGGGTTA
TTGCGACATGCTCTAAAACATGCAGTTGCGATTCTATTTAAAAACTTACCGTTGCAACCA
CTCTTGAAAAACATGGAGTTGCGACCCACCTTGAAAAACATGCACATGTACCTCCCTCTT
AAAAACATGCAGTTGCCACCCCACCATAAAACATATAGTTGCGACCCACTCTTAAAAAAT
GGAGTTGCGACCTCCTCTTGAAAACATGCAGTTGCGACCAACCTTGAAAAAATGCAGTTT
GCGACCCTTTTGAAAACATGCAGTTGTGATACTGTCTTAAAAACATGCAGTTGTGACCCT
GCCTTAAAAACATGCACTTGCAGCCCTCTTAAAACATGAAGTTATGACCCCTATTAAAAA
CATGTAGTTGCGACTCTGTCTTTAAAACATGCAGTTGCAGCCTCACCCTGCAAACATGCA
GTTACAACCCCTCTTGAAGACATGCAATTGCAGCCCCACAACTTCATGCACTAGCCAACG
CAACGAAAGTCCGAACTGATGGGAAGGGCTAGTGCAATCCACATATAC