morexGenes - Barley RNA-seq Database

Contig contig_136896
Source Contig contig_136896
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136896 (10577 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_136896

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5942	2	4378 bp	MLOC_5942.1	Available	Available	LOC_Os10g43050.1, FRAME:-1, EVALUE:3e-131, 13110.m04073 protein OsClp11 - Putative Clp protease homologue, expressed
MLOC_5941	2	6166 bp	MLOC_5941.2	Available	Available	LOC_Os10g43060.1, FRAME:+3, EVALUE:3e-141, 13110.m04074 protein expressed protein
CDS Structure of MLOC_5942

CDS Structure of MLOC_5941

Contig Sequence (10577 bp)

>contig_136896 10577 assembly3_WGSMorex_rbca.fasta
CTACGACTCGTCTACACTCGATGTTGAACGACACCTGCATTGCTGGGTTATGTATGCCTG
TCTCTGTATGGATGTGACACTTGGGTTTATAACTAGTTATGTCGACTCGGGTTCTTTGAC
ATTGGAATGCTAACGATGTATTCACATGCGCGAGTCAAAAGGCGCAAACGATCCCGACCA
AGGTAAGATGTCACCATGGGGATGACCATCCGTGAAACCGCAAATTGATGTGATATGTTA
CATGCTAGATTCCTATGGCTGAGGATTGGGGTCCCCACACTTAGTCTCATTTTTGGTCAT
TTGGTGATAAAAGGGAAGATTTTTGAGTTTGCCTTCAAGTGGGTATATATATATGAGTTG
TTTTTATTAAGTTGCAAGTCTCATTTTTCTGTAGTGTTTTATTGAAGTGAGTTGTAAACT
TTAGTCCGATGGTGGTTTGACTCGTTTTAAACCGATTTCTACATGCTTTATCTACAAGAT
TTTATCTATGCATGCGTACTGAATTTTGTCACACCCCATTTTTCATCATGCATTGCAATT
AGAGTTCCGACAAGGAGGTTACATGGTGGTTGGGGTGGTGGAGTGGTGACGAAGGCAAGA
GAGAAAGAAAAAGGAGAGAAATATGAAGGATGAAGGCGTAGGTCCGAAAAGGGTTTTGAG
TGACGGGTGTGTCGGAATTCTACGTGTCTACTATTCGGACTTCCGTGAAGCCCTAATATT
TGTCTCCGATTTACGGGAGAACATACGTCTAGACCGCCCTGCGGACGGATACATGTCCAC
TGTGGCAAAGCTAGCCTAAAAAATCTACGAAAAAACTAATGCCCACACGTGTGGTCGTTT
GTAATTTGCCCACACGCCTTCATTACCACTCATTTTGTCACGTCAAAATAGATGACATCA
ACTTTTTTAATTTTTGGCTTAAAAATGCTCTATCTTCTAATTAAAAATCCAATTAAAAAT
TCCTTTTCACCATTAAATCCGTTTCGACGAGATCTTCAAAAATAGATCCCATGTTGATAT
GTTTCGATGAAAAAAATTGGGCAATAGTTGCCATGATGTTACACTGTAGTTGTCATAGTG
TTTACACTAAAGTTGTCATAACATGTTTTATCTATTTTTTTCTAGATTTAAAGCTATGTG
TATATTTTTCAACTACTGTTATGGAAATTTTTATTAATTGACAATGGCAATTTTTAGTAA
TTAACAACGGCAAATTTAATGCATGGGTCATGGCAATTATTTACTAATCCATCAAAATTT
ACTTTTAAAGGTAGAAGAAAAAATACGTGAAATATATCATGACAACTTCAATGTAAACAC
CATGGCAATTTCATGTGCAATAGCATGATAACTTTTAACGCAAAAAGAAGTCGTCCAAAA
ATATTGATATGGTGAAAATTGATCTTCAATTGAATTTTTCATTTGAGAGATAAAACATTT
TAAAAACTAGAAATAAAAAAGATCCCCACATGCATGCATGTGATGACGTGATGCAATCTG
CGTGTTATAGACGTGTAGACGAATGTTGCTCCTATCACATGTGTGGGCATTATCGCGACC
CAAAATCTATGAGGTCAATGCTACTCCATAATATACAATAATTATAAAACGAATTTAGCT
TGTTTTCTTAAAAAGCTGTGGGATCAGTTTTACATGAAAACGTCATTACATGTTCACATT
GAATGGCTTTCATGGACATCACGGTCGGATACGGAGCTTGAGGGTTCGCCTTGGATATGC
GGTAGTACCGTTTTTCTTAGGACATGTACAATGATGTTATTTTAGAAATGTCACATATAA
TAAATGATGAGGTAAAGAAAAAAGAACTCGAAAAAAAGGCTTTGTCTTCTCTTATTTAAG
AGAAGACAAGCGGTGATCTTTTAGCACAATATGTCTTATCATGTTTTTAGAAGTAACTAA
TTATAGAAGATAAGGCTAAGAATGACTCGTTGTATATTTTTTTTTGTCATCATTAAATTA
CATATAAAATTTAAGATAAAATTATCTTATCAACCATTGTACATGTCCTAACTATGCGAG
CTGCATCGACCCAATCGTCGACCCTGTTTACGACGTGCGTCCCATTTAAAAGGAACGGAG
CACGTAGGTCGCACACAAAAATCGTTCGGTGCGTTTTCTTTTTCTTTGATGTGGGAACGC
AAGCTAGATTCTCACTCGTAGAACGGGGGACGCAGGCTGCTGCTACCGCCACCGCTTGGC
CGGGTCAACACGGAAGACGAGAGCAGGAGGAGGTGGAACACGAAGCAAGGAAGAACCAGC
GGGGGCGGCTGCAAATGCAACGCAGTCAGTGCGAGCGGCGCGTGCGTGAATTGCAAATTC
GCTGTCGCTTGGCCGGGTCACAGGGTCAAACCTTCCGAACCCACGCCCGTTTCCCTGTCC
ACGCATGTGCTGATGGATGCGCGTGCCAACCACCGCACCCAACAACTACCCAACCAATCC
CTCCCCCTCCCCCTCCCCCTCCTGGTCTCTCTCCTCATCTCACCTGTGCTCTCCACACGA
CCCACACCGAAAATCCAGAGCTGCCCGCCCGCCTCGCCTCCTCGTCTGCCTCCTCCCCTC
CCGCGCTTCAGTTTCCAGGTTACTTTCTCTCCTCTCTCCCGCCTCCTCTCCTCTACGACC
AGCCGCGTCGAATTCGATTTAGGACGGGCGGATGGGTCGGTTGATTGGTTGCCATGCCAA
TTCGATTTGGGACGATGGGGGTGGCTGGGTTGCTCGATTCGTTGATCGCCCTGCGAGATT
AAACATCACGAATTGCGATTCCGACCAAATCTTCCGTGATCCTTGCCCCTATCATTTCCC
CCTGATTTGTGCCCCGGCTTAATTCCGAGCCGGCAATCATGGAATGGAATTAATTTTGCA
TCATTTCATATTTTCATTCCAACCAAGAAGATGAAAGCAGCCGATACTGATTAGTATTAG
TAGCAGGGGTAGTTGCTGGGTTGGTAGGTGGGTCTCTGCGTAGTGCGTGTTCTTTTAGGT
AAGTAGTTCAATGACTCAATCGGCATGGAATAACAAGTTTGTTTGCGACCACTGCCAAAT
CCAATCCAACCACATGCACCTAGGGATGAAATTTAATCGGACTGTATTGAGTTAATCTGT
CTATCCACGGCCTACCAGTTATGATTGTATTTTATCGATTTCATAAGTTCTGATCATGCA
CCTCCACCATAGGCCGATTGGCAGCTGCATCTCGTACAGTTCTGGTATATACCATCTCTT
GACTTGACTAATATTGCTCTCACACTCACAGGCTAGGTTGCTGCAGTTGTTCACATGGAT
TCCTTTTTCCAAAGAGCTTTCGGTGACCCAATGTGCTCGGAAGACAGTAATGTTGTCCAG
CAAGGAATTGAACGATGCCCATTCCTGAGGAACATCAACGAGCCTACAAGTTTTTCCTTG
ACATCCGTTAATTTCCCCGCTCCGGTATGTCCTTACCGTCCACCCCTCTTTATCTGAATA
ACTGTATATATGTTATTTATTTGCTTGCTAAACTCTACCATTTTCTGCTCGTGAAGGCAA
CCGGAGCCAAGGGTCCAATTTTCGAAGACGGACCCAACTTTGACACGGCATTTCGAGTTT
TCCACGGCAGAGACGGGGTTGTTCCGCTTTCAGAAGGAGCCTTTGCACATATTGAGAAGC
CTCTGCCAAAGCCCACTCCTGAATTTAACCCCTTGGCAGCCAAAGCAGCTACCATCAGTC
TCTCAGGATTTGGAGGCTTTTTCAGCTTCGGTGATTTCTCAAACAAGCACAATAAGCAGA
ACTCCAACAAGAAGAATCCCAACAACCTCCCCCAGGTAATTATGGTTTCTCTTCTCCTCA
TGTATTTGTTCTATCCTTCAAATTACCCGCCTTTTGTTAGAATGTTTCATTATCCTGACG
AAGGGACCTTTACATGAGATCGACTTTTTAGTACCAAAGGAAAGCAAATCTATCTTAGAT
GCATGTTTCATATGATATTTTTGAACTACCATACATGGTGCAGATATTAAAATGAGTAAC
AAATATAACGTTATTCCTTAAAATTGGAGCATACCATTCATGTACCTGATCTTGCTTTCC
CTGGCATTCCAGAATAAAGGCCAGTCTAATAACAATCATGAAGCGATGAGCAACGATTGG
CTGGAAAATGGTCAATGCCCTCTTGCAAAGTCATATAGAGCAATCGGTGGAGTCGTGCCT
CTTGTCGCAAAGCTGCTGACACCCCCAGCTGGTATGAAACTGACGTGCCCTCCTGCGATT
GTTGCTGCCCGTGCAGCAATATCCCGCACGGCATTTGCGAAGGGGCTTCGCCCTCAGCCC
CTACCAACAAAAGTAGTGGTGATCGCGCTGCTCGGTATGGCAGCAAATGTTCCTCTTGGC
ATCTGGAGGGAGCACACCACAAAGTTTTCAGTGCAGTGGTTTGCGGCGGTCCATGCTGCA
GTGCCTTTCATAGGGATGCTGAGGAAGTCCATCCTGATGCCGAAGAGCGCCATGGCCCTT
ACAATAGCTGCCTCGATATTGGGTCAGACAATTGGTTCAAGAGCTGAGCGTATCAGGTTG
AAGAGGGCAAAATTAGCAGCAGAGGGCCGTGGTCATGAACATGCTACCCGGCTTGAAGCT
CCGGTGAGCCTGAAAACTGGGAGCTCAGGTCCTGTCCAGCTCTGGGATCCGCTCGGCCTC
AGGGTCAAAGGCGTCGTGTCCCCAGCCCTGGTTCCGACTGTCGGTGCCATGTATTGATGA
GATGATCATGCTTATTGCGGCGGCTGCGACAATTGTATCAGAGTTCCAGAAATTGTTTCT
TTGTATTCATTGTTATTGTGTCTTGTAAAGGATTGCTGGCTACATTGGATTCTTGTCCCC
ACTATCATGAATTTGGGTGCAGTCAATAAATTTTACCATGTCCTTTGGTTTCCTCTTTGC
AGCAAATGTTGGCTAATTAGACTATTTCTATGTTCCATGTGCTTTCATTTGCCTGGTCAA
AGAGCCATAACACAACAGCTCCCAATCATACCAAATGCAACGGCCAACAAAGTCTACTAC
TCGTACTAAAAAAAAGTGTTACATCTTTGTTTTGACAAAAGCTCCAGCAGTTGCTTGCTG
TGCAAAATACATGCGAGGCTAGCTGGTTAGACCAGTTGTATGTTCCATGCGCTTTCATTT
GCTTGGTCAAATGCCAGAACACAACAGCTACACCATCACACCAAATGCAACGGCAGATAA
AGTCTACTGCTAAGGATTACATCATCTTTGTTCGATGAAAGCTCCAGCAACTGCCTGGTT
CGAAATACAGATGACTGACAGGCTAGCTTAGTATATGACTGACAGGCTAGCTTAGTATAT
CTCATCATCTGGGACATCCGGCGTAAGAAACTTCTGAGGGTCCTTGTACATTTCCTCATA
GTTGTATTTAGGTTTCACCCTCTCTGGAACCGGCTCAAGTGGGATGATGCTGTCTTCGTC
AATCACACCATCAATGATCCCGTAATCCACGGCCTCAAGAGGACCCATGTATCGGTCCCT
ATCGATGTCTTTCTCTACCTGCTCCAGTGTGCGTCCCGTAAAGCCTGATATCAGCCGGAT
GACATTCCTCTTGCTAGCCAGAATTTCCTTGGCTTGGACCTCTACATCCAAGGCCTGGCC
ACTCGCGCCTCCCACGGGCTGATGCATCATAATCCTGGTGTTGGGCATGGCGAACCGTTT
GCCCTTTGCGCCACCACCAAGGAGTATAGAAGCTGTGGATCCAGCTATGCCCATTCCAAT
AGTGGATACATCTGCCCTCACCAGCTGCATTACATCGTAGATAGCCATTGTCGCACTGAA
ATGGAAAACGAAAGAAGTCTGTCACAAAATGCAACTAGGTTGTATCAACAGATATGCAAA
GGCTACCATTGCATGCACTTCAATGTAATGGCAAGGCTAGCCTAAAACTCCTCTTGTTCT
CCAAATGTTTAGACATCAAATGTTTAAAAAATCTACACATAATATTTTCAATCTACCACT
AGTCAAAGTTTGACTTTGCTTATGTCCAAAACTTGTTCTGTTTCCATGAACTAGTTCTTT
GGACAAGACTAGTCTTGTCCCACCATTCATACCAAAGGTACAGTTATACCAAACTAAAAA
AGGGAATCCCAAGTCAACTAACAATAGGGTGTTCCAAGTCAAATAACAGGGCATTCAAAG
CCAACTAATAGTCAACCAGTCAAATGTGATATCTTGAATGAGAGAGATGAATGTTAAGCA
CATGTAAACAAGAAAAGCATCATTCGTAACGTGCAACAAATATCATTCACAATAAAACTA
CCCATAATACTGTTTAAGCTTTTTCTGGAGGGGGAAGTTCCATCCAGCTAATCTTAGGTA
GAAGCTTACATACTGTTTGATCATCATAGAGAACAAGGTGTTCAATGCAGGTATTACCAA
AAAGTTACATTCCGTTGATCTCATAACAAGCCAATAAGTAGTGAGCTAATGATACAAGCT
TGCATATTGTTTGATCGTCACAGAACAAGGTGCTCGATGTTGATATTGCTAAGAGCTTAA
TTCGGCTGATATAACAAGCCAATAAGCAGCGAACTAGTGATACAAACTTACATATTGTTT
GATCATCACAGAGAACAAGGTGCTAGATGTGAACTTGAATTAACTCCATTCAATTCTAAA
TTTTAGTTATGGCCTAGATTTCAGTGCTTTACTTACGTGTTACCATAGGTAGATTAGACT
AGGATTTTTTGTCAACCTTTTTTTTCCATTTCAGCAATTATGAGTATAGAAACGACCTAC
TGAATTAGGCGATAATACAATCAAACTGGTATTATTTTAGGGATAACAAAAGTCCAGTTA
AATGAAGATAAGAACAGAGATAATATTTGCAATCCAGAATTGTTGATGTGGTAAAGAACA
AGATTTCCGCCTATGCTCGGACCAGAAAATTGTAAACAAAATGAATGAATAATAACCTTC
CGCCGTGATGACAAATTATTAAGATACGTAAAAGGTCTAGCAAGGGGGCGACTCAAGGAT
AGTCAGTAAAGTATCATTCGGGGATTAGTGCAGATTTCAGCAAAATAGGGTTATAGCTCG
TATAGTCTGAAGGTATGTCAGTGTCATACTGATCATAGCCAGCAAACTCTTATCCAACAA
GATATTGTCTGACCTACTGCTGTGAATCGACTTGATGAGTCTACTACATATGCAGGTCAT
GATTTTGATTAGTGCAGCCTATATCGAATCAAACACCCGGGAGTGAGTACTATCACGAAT
CGAACTAGTATTTGGACAAAGTAGTTTGCCCACAAGATGACCATGCGAAATAATGTAAGA
CGACAAAGGGCATCACTAGCTGAGATGGTAAATTCAACTCTACACAAACCGAGAGAAGCC
AATGGAGGGGAGTGATGCATTGGGAGGAGACCTGAGTGATCCACCGGGGGAGTTGACGAA
GAGCCGGATGTCAGATTCGGAGTCCATGGCGTCGAGGAGGAGGAGCTGACTGACGACGGC
GTCGGCGAGGAAGTCCTCGATCTCGTTGCCGAGGAAGATGATGCGCTCCCGGAGAAGAAG
GCCCATGACGTCACCGCTGGCCACTCCTCCCGGCGCATCCAACTCCGCTCGGATGCCTTG
GCCCTCCCACCGGGACAGAGGAGACATGGCCGCCGCGGACGATGCCGAAGCCGCGTAGCT
GCGGCGGTTCAGCTTGAGGAGGGGATGCGGTCGCGCCGCCGGCCCACGTGCGCAAGCACA
TAGCTGCCGGTGCCTGAGGCGGTGAGCGGCAGCCGTGACGGAGAGGGAGGCAGCGGCACT
CGCGCTGGTAGCCGCCATGCCTATCTGCCTAGCTTCGTGGGTTGTGGAGCAGCAGCCGGC
GGCGGCGGAGTGCTCCCTTCTCTCCTCCCTCTTTGAGTGTGAGAGAGTAGATGGAAGGAG
TGGATAACCAACTACTCTCTTCTTCCTCTTTCATCAATTGGTTGGGCCTATTTCGCGAAC
TGGGCTGGGCCTTGTTTTCCGTTCTTCCCATTCCTTCTGAGATTACAACACGGGCAGCAG
ATAACATTTCCCTTAAAAATTTAAAAAAGCAAAGCACATAATAACTTACAGTAGTAAAAC
CATCTTGTTTTTAAGGGGGTCATTAGTAAATTATCATCAACAAGACATCAACTACCTGAT
AAAAACACAGTACTACTACTAGTCAACTCGGATACAGATAGCATGCCCATGAACAGCCAA
AATTCTTACAGTTGTGAACATTCAAAAATTGCCAAAAGAACAACGGATAACACGGCATAC
AAGTTGGCACCATCAAATGGCATTCTCGAGGCAATTCGATTCTATTCGTCTGCTTCATCT
TCTTCTTCCATGTCGTTTTCAAGATGCGCAAGTGAAACTTTGGCCTTCTTCACCTCGGAC
GGCCTCGTCCCAGCACCAATCTCCTCACTCTTCCTCTTCTCGCCCTGCTCTGCGTCAGCA
TCATCTTTTCTAGCTTCACCTGAGACCTTGCCGTCATCAGCCTTCTCAGCTACAGAATCA
TCCTTCTTCTCAGATGGTAGCTCCACTCCCTTCTTCAGTGACTGCTCGCACTCTTTCAGG
AAAGCACGCACGTCATCATTCTCCGCAACATGTAGAGCCGTTTGCCCTGCATTTGTCTTT
GTTGTGATGTCCACGCCCCTCCTCACCAAATACTTCACAAGCTCCAGGTGGGAGTTCTGA
GCAGCAAAGTGCAACGCTGTGAAACCTTTCCTGTTCTTTGCTTTCACAGAGGCCCCCGAT
GCCAGCAGCTCACGCACCACTTCCAAATGACCTTTCTGGGAAGCAAAATGGATTGCGGCG
GTGTCATCCATTGCTGCAGCCCCCACATCAGCTTTGTGCTTGCAAAGGCATTTCACAACA
TCAACATGCCCAGCCCATGCCGCCAGATGGAGTCTACGTTAACAAAACCAACTATGTCAA
GGAGATAAAATGAACAAAGAAAACTGACATGACATAAACAAGTTCATCACATCACATAAT
CTGGTGCTACTACTACTGCTGCAGTACTCGTACTGCATAGCAACGTTTTAATAGAGGGAA
ACAAATCTATCAACACAAATGAAACACTATACACAGATCAGATATAAAAATGAAACACTC
AGTTAGAAGCTGGATTACAAGGAAAAGATAACTCTTGGGGCTTGTGTGATGGTATTCAAA
CAGTTGTCTTCAAATTACAACAAGGGCAAGAGATGAAACATAATGGTTGTCCCAAAGATC
CTAAATTAGCAGGGATAAGTGAGACCACAGCTAGTAGTTCAAAGCTGCTATGCTATGTAA
TGCAAAAGGCCCAGAGATAGCAGCACATCTGAAAACCAAAACAACCTTGAAATATACTTC
CTCTGTCGCAAAATAAGTGTCTAAACTTTGTACTAACTCTAGAGTTAAGACAATTATTTT
GGGACGGAGGGAGTACCTAACTAGAGGAACAGAGGACGGAGAGAAGTGCCGCTGTGTTCT
AGACTAATTTGAAAAGGCAGCAGCTATGGCAAGGCACTATAATAGTATAATGTGTCACTT
AGGGATATAATATCGCAATAAACACCGCATCAGTGCATGGGCCAATAGCTACAGAAAGAA
TTAGGGTGCACTTGGTATAAACTTGAAGCACATAATCAGTCAGCCAGCATACACAAGTAG
TAGTAATAATGAAGTACTCCCTCTGTTCCAAAATATAAGACATTTTTGCAGTTCAAATTG
AACTGCAAAAAAGTCTTAAAATTAGGAAGAGAGGTACTTCCTCTGTATGTAAACTAATAT
AAGACCCGTTTTAGCTCACTACTTTGGTTACCTAAAACGTCTTATATTTGTTTACAGAGG
GAGTAATAAGCAAGCACTATAGGTGGCGCTTAATCATGTCACATCAGTACATCACTATAT
CAGAATTACACAGTATGGTGGAACTATCAATCAGAGAAGGAGCTGTAGCAGAATTAGACC
ATTAATCAAGATTGATAGTGGATCCTATCTAGGAGGAACAAGAAGAGGAAAAGGAAGGGA
GGGATAATATTACGGGGTGCGGGAGAGGCGGTCTCTAGAGTTGAGGGCGAGAGGGTCCGA
CTCGCAAAGCGACTCCACCGCCGCCGCATCACCCGACCTCGCAGCCTTGTGCAGCTTCAG
ATCCTCCTCCTCTCCTCCACCCCGTCCTTCTCCTCCTCGGCCTCCTCCGCGCCCCCCGCC
GCCGGCTCGGCGTCTCCCCATCTCTCTCACACGGGCTCGCGGGAGCGGACGAGAGAGAGG
GAGGGGAGAGAGAGAGAGGAAGGAGAGAAGGAAGGACGAAGGTGGGGAAATCGTCGGGCG
GAGGACGAACTCAAGCAGCCTTACTGCGCTAAGTTTCGTAATGGGCCGGGCTGGGCCGGA
CCTTTTGTTTTAGAGGAAAATTCTCTCCACATACCCTAAGAGCAAGTCTAGTAGAGCCCT
CAAACCCTTAAAAATAACCGTTTTTTTACAATTTTCGTTGAAAAATAGCGTAGACTAGAA
CCCTTAAACTCTTAAATCCGTAAAAAAAATTAGAGGTCCAACCCTCAAACACCTTCCCAG
CCTGTAGAAGTGAGGGT