| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_136853
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_5907 |
1 |
3308 bp |
MLOC_5907.1 |
Available |
Available |
LOC_Os03g17180.1, FRAME:+3, EVALUE:0.0, 13103.m02054 protein ABC transporter, ATP-binding protein, putative, expressed |
| MLOC_5908 |
4 |
1394 bp |
AK249774.1 |
Available |
Available |
None |
| MLOC_5909 |
1 |
1236 bp |
MLOC_5909.1 |
Available |
Available |
LOC_Os03g17170.1, FRAME:-2, EVALUE:0.0, 13103.m02052 protein zinc finger, C3HC4 type domain containing protein, expressed |
CDS Structure of MLOC_5907
CDS Structure of MLOC_5908
CDS Structure of MLOC_5909
Contig Sequence (9057 bp)
>contig_136853 9057 assembly3_WGSMorex_rbca.fasta
GACCTTTAAGCTCCAGCTGCTCTGCCCCTGACAGAGAGCGACCTCTAGCGCCATGGTCAT
TATAGGCATTTCACATCTCTCAAAATTTCTACAGATATCCAAAATCATGACAAACAAACA
GTTGGATTCTGATTCTTAGGAATCTTTAGCTGCAGATTCCCAAAATCCACATCCAAAGCG
ATTCTTAAAAATCTGTAGCCCAAACAAAGGGGGCCTCAGTATCACTTTGTTTTCAGTCTA
GACTAGCCAAGGCTTCTGTGTCTGGCACAATTATAAGAAATAAAACTCTGTCCAGTCCTG
AACGATTTGATACTTGTTTTTATGCTAAACAATGTTCAGGATATTGGCAACTTGTACCAT
ATCGGTCAAGTGCTCAGTAGGGATAAATAGGCAAATTTTCCAGTTAATCGGCTGATAAAT
CAGTTAAATGACCGATAAATCAGTTAATCGGCTATTCGGTGACCCACCAAGTAGAGATTA
TCTGACCGAGATGCCGATTAACTGGCCGATATTTGGAACAATGATTCCTAAGTATACCTT
GAATGCTGTGAGCATCCAGCTACTGTTTTGAAGAAATATCGATTAACCTGGTTGTTCTTA
CTTTGTTCCAGCTGTGCTAGATTTGCACTATTTAACCAGAGGTACTATATTTATTGTCAA
TCTTTCTCAGGATGCCTACCAAGAATAGTAGGGAGCGCAAGTCACTCCAATTTGAGGATC
CACCAATCAGCCAAAACTTTCAAGAATCATCCTCTCCTAAGATGGCAAAATCACCTTCTC
TTCAAAGAACACATGGCATGCTTCAGTTTTGGCGGTCAGACACCACCAGAAATTCCCATG
ATTCACCAAAGGATCGAAGCCCACCTCCAGAACAAACTATAGATAATGGAATACCTTTAG
TTGCAACTGAAAGAGCACCATCTATCAAGAGACACGACAGTTTTGAAATGGAATTGCCCA
ACCTTCCGAAAGTTGACATCCATCCCATACAACGGCAATCTTCAAAGAATGCAGGACCTG
ACTCGCCTATATCTCCTCTTTTGACTTCTGATCCGAAGAATGAGCGTTCACATTCACAAA
CTTTTAGTAGACCACAGAGTGAACGGGATGATACAAGTTCTGAACAGAGTGAACCTGATG
AATTGCAACATCACAAGCCACCATCATTTTGGAGACTGACAGCACTTAGCATTGCTGAAT
GGCCTTATGCTCTCTTAGGCACAATTGGTGCTGCTATATTTGGCTCATTTAATCCACTGC
TTGCTTACACAATAGCACTTACAGTGTCAGCATATTATCAAATAGAAGTTAGTGACATGC
AGCGTGAAGTGAACAGGTGGTGCTTATTCATAGTAGGAATGGGTGTTATTACAGTGCTGG
TGAACTGGTTGCAACATTTCTATTTTGGAATTATGGGGGAGAAGATGACTGAACGTATAA
GAAGAATGATGTTCTCCGGTATGCTATCTGTGCCTTTATATATGAGTTTTTTCTTTTTGC
AGTCTGCTGCAGTTGTGAAGTTAGATTGGATCTTCTAGAATTCCACACTAATTTAGTTCT
TTCACAGCAATGCTGCGCAATGAGGCTGGATGGTTTGACAAAGAGGAGAACAGTGCTGAT
ACACTCTCCATGCGCCTGGCAAACGATGCTACATTTGTCCGTGCTGCATTCAGTAACCGC
CTTTCCATATTCATACAAGACACTGCTGCAGTCTCTGTAGCTCTTCTCATTGGAATGTTG
TTGGGATGGCGTGTGGCGCTTGTTGCACTTGCAACTTTACCTGTTCTTGTTATCTCTGCC
ATTGCACAGGTAATACAGCCTTAAGGATTTTTGGTCTACTATATTATCACCTCAAAAGTC
TGATAGCCTATTTTGGCATGTTAACGGAAGTTCTGGTGTCTGTTTGCGAGATCATTGAGC
ATTTTTGTGTATACTATAAGAGTTTGGATCTGAAAACCTTAAATAGAAGCAAGGTTATGC
TAATGTATCACACAGGGCCTTTTCGGACACAAAATATACTGGGGTTGGTCCAAGTGTTGC
CTAGGTTATTTTTATATTACCTTGGATGTTAAAACTTAAAACTTAAAAGGGACCCATACA
AGCTAAGTCTAAGAAAGCAAACTCACTGGGCCCTGGATGGTTTGGAAAATTGTCACTTGA
ACATGTGGCTCTAGCATGTACCTCATCTTGCAAATATGATCTTTATTATCTGTTAAGGGT
CAGTGCACATTTCAAACCTTAGAGATATTTTTGATCCTGTTACAAATGGTCTTTCCTGTC
AATAATCAACACGATTTGCACTCTCTTTCTATGGCCACATATTTGGTATTCCCTAATAAT
ACAGTGTCCGTATAATTATTTAATGGCCTGATCTGTTAAACACTTGAATTTGCAACACTA
ATCTTGAACTGCATACATATCTTTCACAATTTGGCATTCAGTAACTTGATACTGGGTATT
TTATGTTAGAACTGGTGCGAATAGGCATGTTCTAAACTGATATGATAAACTATTTTACAG
AAATTATGGCTTGCTGGCTTCTCAAAAGGAATCCAGGAGATGCATAGAAAGGCTTCATTA
GTACTTGAAGATGCAGTCCGCAACATTTACACTGTAGTTGCTTTTTGTGCTGGAGACAAG
ATAATGGAACTCTACAAATTACACCTTGGTAAGATACTGAAGCAAAGTCTTGTGCACGGG
TTGGCTATAGGCTTTGGTTTTGGCTTCTCGCAATTTCTTCTTTTTGCCTGCAATGCCCTC
CTTCTGTGGTACATTGCCACCTCAGTGGACCAGCAGCGCCTGACAATAGCCACGGGATTA
AAACAGTACATTCTATTCTCGTTTGCATCATTTGCATTGGTGGAGCCCTTTGGGCTTGCC
CCGTACATACTCAAGCGGCGGAAGTCTCTCACTTCAGTGTTTGAAATTATTGATCGAGAG
CCAAAGATTGATCCTGATGACAACACTGGCCTGAAACCGCCCAATGTCTATGGGAGCATT
GAATTCAAGAATGTTGATTTCTCCTATCCAGTTCGTCCAGAAATCTTTGTGCTGAGCAAT
TTTAATCTTAAGGTGAGCGGTGGGCAAACAGTTGCAGTGGTCGGTGTTTCAGGATCCGGG
AAGAGCACTATCATTTCCTTGATTGAGAGATTTTATGACCCAATGTCTGGCCAAGTTCTG
CTGGATGGCCGGGATCTGAAATCGTTCAACCTGAGATGGCTACGAAGCCACATGGGCCTA
ATTCAGCAAGAGCCCGTCATTTTCTCGACAACAATAAGGGAGAACATTATCTATGCAAGG
CACAACGCAACAGAGGCTGAGATGAAGGAAGCTGCAAGGATAGCAAATGCTCATCATTTC
ATTAGTAGCCTGCCACATGGCTATGACACTCATGTGGGAATGCGAGGGGTTGATCTGACA
CCTGGGCAGAAGCAACGTATTGCCATTGCTAGAGTGGTTTTGAAGAACGCACCAATATTG
CTGTTGGATGAGGCCAGCTCTGCGATCGAGTCTGAATCAAGTAGAGTGGTGCAGGAAGCT
CTTGACACATTGGTGATGGGGAACAAGACGACGGTCCTGATAGCGCACAGGGCAGCGATG
ATGAAGCATGTGGATAACATTGTTGTCCTAAATGGTGGTAGGATAGTTGAGCAGGGCACC
CATGACTCTCTGATGGACCTGAACGGTCTGTATGTTAGATTGATGCAGCCCCATTTTGGC
AAGGGCCTTCGCCAGCATCGGCTAGGCTAATGTAATTAATGTTGGGTTTGTTAGGTGTAA
ATTATGTTAGGGCATGGCCAAGTTCCCCTGTTGTTCTCAGTCCAGCCACGTAGCTCTGTG
ATTGGAGCTGCTGGCGCGCAGGAGGGTGACCTGGTCTTGACAAAATTTTCGACTGGAGAT
TGAGATGACTAGTTGTGTTGAATCTGTAGGGAACTTTTATCCTGGAAATAGTTAGCAAGT
TTGGTGGGAGGGCATTGTAATTGTTGTAATATATGAGTTGCAAACATTCTTTGGGAGGCT
ATGCGCACTCGATTCATTTCACCTTTGTAATGCACCGATTTGATGATTGAGGTGTGTGTA
AAGAGAAGTGTTCTTATACTAGGTTAAATCCTTGGTGATTTGCTGAATGTGCCTGTTTGG
CAATGATTGTATGAATTGTAGTTCGTTCATTCAACAGACCGTTAGTCAATTACGCCCTGG
AAGCCAGAGTGAGTTATGAATCATACTCCCTCTGCTTCCTCAATATGGTTTTAAGGAACA
AAATTCTGACCACTAATTAATGCATATACTGGATGCTTGCGTAGAATCTACTACTTCCTC
CATACCTAAATATAAGTCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATG
AGTGAATCTATACCCTAAAATATGTCTATATACATTCATATGTAGTTCATTAGTGAAACT
CTTAGAAAGACTTATATTTAGGAACGGAGGGAGTAGATTTGTACAAAGCATTCAATAGCC
CGACGTATGAACGATGGAGATTGGTTGGGTTCCTCAAAATTTTAAATGGCCTGCTGTTGT
GCCGCTAGCCATGTTATAGTGGTTTGACTGTATAATTGTCAGGTAACGTTATTAAATATC
GGGCTATAGCTGTCCGAGCAGGATGATGCTATTTGATACAGCGTGCTATTTGAATTGAAA
CTATGGTTCCTTCCTCTTGGCCAGGCCGTGACACCAAAGTTTCGCGCGCCTTGCAAGTGG
AGCCGGCGGACATGAAGAGGTTGCCCAATCAGGCGTTCAAGTCGGAGATCTTGAAGGAGT
CGGCGACGACTTTGAGCTTGTTGCGCAGCCTGCTCCACCGCCGCTCGTTAGCGGTCACGA
TCAGCGTGTAGTACCTCCCTGCCAGAAACAACACCAGCAAGTCAGCTTCGTGTCCACGGG
AGAGGGAAACATATGATCATAATCCCCATGAACATGTACCATTCCCGATGGCGATCGTCG
CAAACGCCGAGACGCCGTAGCCCGGCGCCTCCAGATCGTACTCAAACGTCCAGTAGTTCC
TGCCATCCACCGTGCGCTGCCAATTTGCAGCACAACGAAACAAAGAAACCGATCATTTTC
CCGATCTTTGCATTGCAAGCGTAGCAGGTCGGGGTTTCTACGGCTGGTCCATGAGATTCG
ACGACTAAAAATTGCAATGCAAGCAGTGGATGAGACGGCAAACCTCCTGCATTTCATAGA
TCGTCGGTATCTGGTTCGGGGCAGCGTACACTTCGTTTACCAAATTGAAGATGGCCTGAC
AGAACATGAAGCAAAATGGTCACAGGACAACATCAGGTCCAAAGTGCTGCCTTGCCTTAC
AAAGCCAAGAAAAACACAGGAGACCAGGCGAAAGACCAAGTGGTACCTCATCCATCGGAC
CTAGGTCACGAATGTCTGTTTTCTGAGTAGGAATGAAGGCCACACGGACAGACTGCAGCT
GCACATTACGGTCCTTGAACGCTGAATCATGCCCCAAGAAGTCGAAATCCTGTCATGAAG
CGCCCGGGGCAGCAAAAAGCGTTATGTGAAATCCATAGGAATCAACAGTAGTAGTTCACC
TCGACAAAAACTTATTTGGGTTCTTCTTGCAGACTGATTTAGTACACTTGACAAATTACC
CTCCAATCAGCTGGGTAGAGGTACGAGTATCCATCGTTCGCGTCGACGTAAGACCGGTAG
TTCTTTGGTACTTCTGAAATCTAGGAACAACTCCAGTAAGTATTACTCCCTCTGTCAACT
AATATAAGAGCGTTTAGATCACTACTACTACTTTAGTTGACAGAGGGAGTACCTCACAAA
TCCTGCATGCTAGTATTTGACAAGTTGAGAACTTGCAGAGTTACATGTTGGCTACCCTGA
ACAACAGTCGCAATGGTCATACCTTCAGCATATGCAGAGCGGCTGTTTAGCAGGACAGTG
GATAAAGCTCCAGCACCAAGCAATGCCAATCTCCTTTTGGTGACCTCTATAAGGTCAGGA
AGAAGAGAGGTTCTATCAACAATTTTTTTTTTCTTTGTCAACCTTGAAAAACACATCGAG
ATAAACAGAACACGAGAATTACTCTTGTCATCAGAGGATGCTTCGGTCGAGCTTGCGTTC
ACCACCGACGGAGGAGCCCCGTTCAGCCTGGCAGTAACTGTACAGTTGGGCGCGACCAAC
TGAAGGCAACACCAAACTTCAAGTCGGGCATAGATGAAGGTCGTAGAGGATAGAAATCAA
GAGAAGTATGATGATTACAGGGTTCATTCAAGCACATACCTGTTTGGAAATCAGGCTCTG
CAGGCTTGCCATTTCACCTTGGGCGGAGCTCTGATCCTAGCTAGGCTTACCCCAGCTTGG
TTGGCTATCTGTTGCTGCTGGAGCTGGACTGTGGTCCGTAAGCTTCTCCAAGTCTTGTGT
GCGTGAGTGGAGGCCAAGGCTGACAGGTCAGCATCTCCATTATCCTTTTCATAACCTTTT
GTTTCTTTGTTTTGTACCGGCCACCGGCTGACAAAAAGGGGACCATTCATTTCCATTACA
AGAGGTTTCTTTAACTACATACATGGAGACATAATCGGTAGAGATGCAAAAGTCATCTCA
CCACAGAATTTGCAGAAACGCAAAACCCATCTCACTGCAAAGTGATCTACTCCCTGTGTA
TTTTACAATACTGCTTAGCACTGGTAAAAGAATTTGCAGGATTGCAGATTTCTTTCAGTA
TAGTTTTTTCTATTCTTCCAGAAGTTCCAAAGAGGCCCCAAGTTCTGAATTTGAACAAAG
CATGATGGTACAAGGAAAATGAATATCTGCTCTTACGGTGAGGAACATAGAAAAACATAG
GAAATTTCCAGTGTGAAAACATATTTGCAAGGTGAGGAATATCTGCTCTCATGCAAAATC
TCCAGTGTGACAACACAGAAAATTGGTAAGACAGTCAAGCGCCAAAGAACATACTGCATC
GAAGCAAAACCGCAAGCACATTATCACCTGGATGAAAAACCTGAGTATCGCTTGTTCCAG
ATCATACTTATCAAAAAGATATCAAAACCTTAAAAAGATCCAGTTTACATATATTCATGC
CACAACGATAACTGGCAGCATTATACAACAGCAGTTACATAATTTAAGTCTACGCCTTAG
GAGCAGGCTTCACCAATCCTAGGCCAGAACCACTCCCTAAATGCTTGAAGTTCTTTGCCT
CAAGGTGGTCATCATGCGCGGCGAAACCCGTTCCTCCTTTCTCCAAATTAACCAAATTCC
TCTCTTTGCATGGTTTGTTGCACATTAAGCAGACCTTATCTGTTGCTATGAACTTGTCCG
AGCACTTCTTGCAGAAGACATGGCCACAGGTGCTGATCGCCACCAGGGACATTGTGTTTG
TGAGATTGGACTTGCAACTGGGGCAGATGTAGCTTTTCTCCACTGACTTATTGCTCTTCT
GACGAGCGTTCTCCTCAGTGAAAGAAATAGGGAAGAGTGATTTCAGCTTGAGCTTCTCCT
GCCCCTCAGGGCAGATTGTGTCAGTAGAAGGAGCATCTACCTTGACAGTAGCTTCGGGTG
TAGCTGACGGAAGCCAGAACGCCTTCATCGTGCGTAGGGCTTCCTCTTCAAAGGAGGTAG
TCTTCACACTGTTGGCTCCATGAAAACCATTCTTGTCTTGGGAACCACTGCGATCATAGT
ATTGGGGGACCGCTCCATGATTCTGCTGATCAAAAGCATCCAACTCCTTAGACTTTTGCA
GCGTCAGCTTCTCCTCCTCCTCTTCCTTTTCTTGCCTTTTCTGGGAGTCATGAGCAATAA
GCTTGCTGGAAGAAGGAAAAACACACAGAAATTCATACCTTTAATTTGGTTGAACAAGCA
GATAACTTAAGGGCAAGTATAGCAATTTCGCATGCAACACTCAGATAATTTACCACTAGT
ATATACTAGTAGAAATCCAATAATGAAGGAAGACCATTTTATCTTGAAATTCAGGGATAA
GCCTGTACAATACTACTCCCTCCGTCCCAAAATAAGTGACTTAAGTTTGTACTAACTTTA
TGAGGGAGTACTATACTATAACTAGTACTAGCAACATAACAATACCAGTCCAAACACTGT
ACCATCACAAACGCCCGTCCCAGGATCGAATTTCGATTGGCACCTCAGATTCATTCATCG
TGCTACCTCCGGTGCCACAAAACTAAAACACCGTGCTAAAAGAATTCTCATAGTACCAAG
GAAAATGGCAAGCTACGATCATTCCAACAAGCCCCATATCCATGAGGAACGCAACAACCC
TAGGAGCAGGAATTCGCATTTAAGCCCGCACTGCCTCTGAGCTAGTAACAAAACATACCA
ATTCCACAATCCTTGATAGTAATAAATTGCAAAGTCCCTAGAATTAACCAGTGCTGGGAT
GACTAAAGAAAGAAGGAATCGGGGAAAAAAAGAAGACGAGCTGGTACCGCTTGATGTCCT
TCTTCTGCGCGAGGAGGCACTCGAGGATGCACTCCTTGCAGAAGGTGTGGCCCTTGGGGC
AGGCGAGCGGGTCGATGAGCGGCTTGAGGCAGAGGCAGCAGGCGTCGAAGGGCTTGATGG
AGTCCTTGCCGAGCCGCTCCCGCTGGGTGCCGTACCCGAGCTTCCGCTTCTCCTCGTAGG
TGAAGAAGGCGAGGTCGTTGTTGTTCTTCGAGTGCCGCTGCGGCATCTTCGCTGGCCCCC
GCCTTCGTCTCCCCTACCGGCAGGCGGGCGGGAGGGGCGGGCGCGGGCGCGAGGAGGAAG
GCGATGCGGTACTGCTGTGAGGTGCGTCGTCCAAGTATTAACCCTAGATTTGACGGGGAA
GAGGACTCGACGAGGAGATGGTTTGATCTGGTGGAGTGGAGACGAAGGGCGGATCGGGCT
GGGACTTGGGCTCGGTTGGGTTCCGTGTCTGGGTCGGGCTGGGTCTTGTGCGAGTCTGTC
AGTCCTCTCACCGGCCCGTGTCATTTGAGTTATGGGTATACCTGGCCAAACGGGCCGGGC
TAAACAGGCCGGCCCGCCAGCCCGCCACGCCACCACGACATGGGCCCGGCCCGGCGC
