Contig Data
morexGenes
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Map Locations of contig_136849 (4097 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_136849

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5903 1 286 bp AK354541 Not available Available None
MLOC_5904 2 868 bp MLOC_5904.2 Available Available LOC_Os03g58350.1, FRAME:-3, EVALUE:2e-18, 13103.m06410 protein OsIAA14 - Auxin-responsive Aux/IAA gene family member, expressed





CDS Structure of MLOC_5903






CDS Structure of MLOC_5904






Contig Sequence (4097 bp)

>contig_136849 4097 assembly3_WGSMorex_rbca.fasta
TCGGCGGTGGAGGCCGGCGGGGTCGGCACGGCGATGACGACGGGGACGCCGCGGCCGAGG
AAGAGCTTGGCGAGCTCCACCATGGGGATCAGGTGGCCCACGCCCAGGCAGGCGTGCAGC
ACCACTGTGGGGTTGGGATTGGGATCAGCCGCCTCCATTGCAGCAGAGACGCGCCGATGG
CGATGAGCTGATGAACAGTGCGAGGATGAGGAGACGATGCTGGTTTTTTTTTTCGAGCAG
AATAAGGCGATACTGACTCGAGTCGACACTGTACTGTAGCCGCTCTATGTGGGTGATTTC
GGCCCATGCTTTGCATATGTTGTGTGCTTCACCGGCGATGGCCCATTAAGGAGATATAAA
AATGGTCCACTAAAAAGAGACCACGGTCGATCTGAAGAAGGGCGTGATAGGCGTTTCCTA
TTAAACGCTGCAGGCGTCGTTTGGAAAAAAGAAAAAAAAATCTAAAACAAACTTTAAATT
TGTACTCCCTTCGTCCCAAAATTATTGTCTTACATTTTTTTAGATATAAATGTATCTAGT
AATTTTTAGTATTTAGATACATTCATTTTTAGACAAACTTTAGACGAGAATTTTAGTACG
GAGAGAGTACATAAAATCTAAATTGAACCCTGGACTTATATTTGTTTCTAATACTTCCTC
CGTAAACTAATATAAAAGCGTTTGGATTGCTATTATACCGGAGTATAATAGTTTGTTTAC
AGAGGGAGTAGAATACTATTGTTATACAGAATCAGCTTTCAATTTCTCTACTATGAAGCA
TGCTACTTCTCATGCAAAGATTAACTCAGGATCGGCTAGTTTACACCGGCCGACACGATT
GTTTTGGAGCATGGTTTCTGATTCAGATACTATCACAATGAAGATACTTCCGTCCTGCTT
GCGAGTGTACGCTCCTGTCTGAAAACATGGTACTTGGACCTTCCATAACCAGTGTTTTCT
TTACTATTCGGGCCGTACATGGAAAATTATGTTGGCTTGGGATAGCAGAGCATTTAATCT
GGCATTGCTTGAGCAATTGTATAATTGAGTGCCCCATAACATTAGGGTGCCATCGTACTG
CTATTTGTTTTGTCGATTTTCTTGCTCGATCCTTGTTCTGTTCTTCCGCTGTACATTTGG
AACAGAGGTGGCATGTGAAGAACAGGCGTATTACTGGGAGTTGCTTGATCCTTGCTTGAC
TTGGAGACTCCTAAACAGCTATAGTTCAGACGTTCAGTGCCTTAACTTTTTTTGTTGGAG
GTAAAAGTAAGGCAGTGCCTTAACTTGATTACGAGGCTCCTAAACAGCTAGACAGAGGGA
ATAGTTCAGTGCCACGCAGGAAGGAATTCAGTTGACTGAATTTTGCTGCACGCTTTCTCT
GAACACCGTACCATGTCTGAATTTTTACCTGGCTGTTGTCACATGCATATATATGTAGAA
GATCTGTGTTATAGGAATGAAACGAACACCTATGGACACTCTTTCGTCGGACCATCGTGT
GCTGGCATTACTGTGGTGCTTGGTCGGTCACATCGCATCCATTTTACGTAGTTCAGAAGA
TATGCTACATACTGAACGGATACGCTATTGTTGGTACGCGTGCGATCCGTGGTATTCGAC
AATGGATCACTGCAATCAAGACTTGAGGAGTGCAATGAATGGTTGCTACTCACATGCATG
CTGTTCACATGTTGCAATGGGTGAGCGTGTGATGAACACGTACGCGATTCACAGGAATGA
ATTCAGTTGACCATCTCTGAATTTGTCTGCATGTATATATAAATTGTCGTTTGTTTCATT
CCTGTAACATGCAGGCAGCTAAGATGCATGCAGCCTGCCCTGCTTCACAGAAACACAACT
ACTCGTAGATCGGCTCACCGGGTGATGAAACCGTCAGCTTCTTGCACTTGGAAACGAAAT
CCCTGCATTAATGTACCACTTGTTAGGTACAAGTAGACTAGTAACTTCTAGTGCACGTAC
GTACATCAGTAATCAACACCAAATTAAGATCTTATATTATACGGAGTAGTAATTACTCCC
TCCATTCTTAAATATAAGTCTTTTTACAAGTTTCACTAGATACTATATACGGATGTATAT
AAATATATTTTAGAGTGTAGATTCATTTATTTTGTTTCATATATAGTTCTCGGTGAAATC
TCTAAAATGACTTATACTCCCTCCGTTCCTAAATATAAGTCTTTCTACAGATTCTATTAG
GAGACTACATACGGATGTATATAGACATACTTTAGATTACATATTCACTCATTTTACTCC
GTATGTAATCCCTTAATGAAATATCTTAAAAGATTTGTATTAAGGAAGATCGGAGGGAGC
ATTTAGTAAGGGAGGATATAAAACTGGCATGCATTGATGCATGCATGCATGCATGGGTGC
TTAATTACCCCCACGGCAGGTCGCCGGCGAGCATGAAGTCGCCGTCCTCGTCCAGCTGGT
AGGTCACGGAGAAGTCGCCGGCGAGGCCGAAGAGCTCGCCCAGCGCAGCACTGAGCTCCT
CGTACCCGCGGTACTCCGTCAGGTCCAGCTTCCGCAGGTAGGGAGCTCCTCGCTTCATCA
CCTTGACGTACTTGCTGGGCGGGCGGAGCCGCAGCTCGGTGTTCACCTGTTGGCCATTCC
AGGAACACAAAGCATAGCAAAATTAGCAATACTTCAAAACCCATTTTCATCTCTCCGGCC
TAATCGTATCCAAAACCATTCTCCATTTGCGGGTTCAACCCATATGCATATATGCAGCAG
AAACCATTTTTGAACACACACACACACACACATATACCTAGTTAAAAAGAAGGGAAAAAA
GTAGCAGTCAAATCACTAGAGTCTTAATCTCCATGGCTGCCGAGGTCTGTCTTGGCCGGC
CGCTGGCAGCACCTCCTGACGTCGACGTCATCCAAATCTACTAGCCCCAGCACGTGTATT
TTGCAAAGCAAAAAAGAAAAAAAAGAGAAAAAATCTACCAGCTTTGGTGAAACCATAGCT
CGATCCTCGAGCGACGCGCTCCAGCATACAGTCCAAGGGATTGAATCAATCCGTGCTCCT
AATCTTCCAAACCACGATTTTGCTCAACCCAGATCGATCCCTTTTTCCTGACCACAAGAA
CTACTCATCGATCTAACTGCGCGTGCAAAGACCTAGCTGCTAGGAGCTGGCCCGAGAAAG
GAGAAGGCTAAAAACACTCACCCAGTTGGCGACGCCGGCCGACCGGCCACCAGCGGCGCT
TCCGACCGACGCGGCGTCGGGGCCCCGGCCGCGGAGGAGCGCCGCCTCCAGATCGCCCCA
AGCGAGCTTGTTCATCGTCATGGCGGGGGCGGGCGGACGCGGAGCTTGTCACGCTTAGAG
ATGGAACCGTCGGTCGCTCGACACCTGCTTGGTCGTGTGTAGCTAGCTAGAGATCAGCTC
AGGCGATGGCGACGCTGTTGGCCTCTGTGCTCTCATCTCATCAAAAAAGAAAGATGCTGG
GGTGCGCGCGCGGACGACAATGCGCTCTTGCCGATTCGGGAAGGTGATGGTGATCGAGGA
CCTGCCGTGCTTACCCCTAGATGGGCAGCTGCCCTCCCAGCCTCCCTTTCCTCGCCCTCA
CATGTTTGCTGGTTGCTGCAGCCGTGCAGGGATGAAGTCGCGATGATGTGAGCGCTCGTG
TCTTGGTGCCGAGCTAAGAATACGATGCTGATAGATATCTACCTGAATCCTGCTGAGCCC
AGAATGGAAGCTTGGGTGGGTGGAGAAGAAGGAGCGTGCGGAGAAAAAGAGCTGCATTCC
TTTGTCTTCACCTGTTACTTACGTACACCCGTGGGCCTCCTCTCACATACACACACACGG
GCACCACGTATCTAATCAACTCCATCTCTTACTAAATATAAGTCTTTTTAAAAATTTCCT
TAATAAAAACTACATACGGAGCAAAATAAATGAATCTATGATTTTAAATATATGTATACT
CCCTCCGTTTCAAAATATAAGTTTTTTTAAAGATTTCACTAGAGGACCAAATACGGAACA
AAATGAATGAATCTANNNNNNNNNNNNNNNCTATATACATCCGTATGTAGCCCCTCTAGT
GGAACCTCTTAAAAGAC