morexGenes - Barley RNA-seq Database

Contig contig_136830
Source Contig contig_136830
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136830 (8542 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_136830

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5883	2	2409 bp	MLOC_5883.1	Available	Available	LOC_Os03g08640.1, FRAME:-1, EVALUE:0.0, 13103.m01000 protein ORC2 - Putative origin recognition complex subunit 2, expressed
MLOC_5881	8	1261 bp	MLOC_5881.8	Available	Available	LOC_Os03g08624.1, FRAME:+1, EVALUE:5e-52, 13103.m00998 protein dihydroflavonol-4-reductase, putative, expressed
MLOC_5882	1	731 bp	AK373992	Available	Available	None
CDS Structure of MLOC_5883

CDS Structure of MLOC_5881

CDS Structure of MLOC_5882

Contig Sequence (8542 bp)

>contig_136830 8542 assembly3_WGSMorex_rbca.fasta
GGCGTTCGTGCGGCGCACCGGCGACGCGTCCGGCCTGCCGGACGCCGTCGAGCTCGCCTA
CGGCGACGTCGGCGACGCGGGATCCCTCGCGGCCGCCTTCGACGGCTGCGACGCCGTCTT
CCACGCCGCCGCGTCCGTCGAGCCGTGGCTCCCCAACCCCTCCGTCTTCACCGCCGTACG
TGCAAACGGTGCTGAATGGTGTTCCGTTCCGTTGCGCCCCCTTTTTCAGATCTTTTCTTT
CTTCTAGGGATTAGAGGTCGCTCTACAAAATTTACGCGGTCTGGCTCCTGCTCTGGTAGT
GACCGGTGTTCCAAAGTTGACTACGCCTTGACGGTCAATCATGATGCTTGATTGATGCTT
GCTTCTTCGATTTGGTTGTACGATCACCATAAACCTAATCTTTTGTCAACTATCCATGCT
GCCGCGGGGTAAAATTTTGCCAGTACAGTAATAATTACAAGGCACCAAGCTGGATGATAG
CAACTTAGAAAGACACCAAGTGAAACAAGAGCATATTATTGAACATGTGTGTTTCCTGCT
GTCATTATCAGGTCAATGTGAGAGGGCTTGAGAATGTGTTAAAAGCGGCCAAGACAACAC
CGACAGTAAAGAAGATAATATATACATCGTCCTTCTTTGCGCTTGGCCCAACAGACGGTT
ATGTCGCAGATGAGACACAGGTAAAATCGTGGTATTACTCAACTGTATTGTTGGGTTTTT
TCATTGTCAATCTTGCTAGTTTCTGTAAACATAAATGATGTCATTTCATCATGAATGATT
TTTGAGCAACAGCTTGGTTGGTACTTGGTTAGTTCTGTTCTAGGCACGGGTATGCATTGT
CAACGCTGTTTGTTAGCTACCACATTGGTTTGCACAAGGGCATACAGATATTTACTTGTT
CTATACTTGATTCCATCAGACTGCAAGGGTAGATAGATATCCTGCAATGGTCAAACCTTG
AAACCTGATTGTTTTGGTCACTGGTGCTATTTCCAAGAACATTTCTGCTACTCTGGTACG
TATTAAAATTGGGGTATTGAGTGATTTGAGTTACTCCTATCTACATTTACACAGGGCTTT
TGTGCAAACGCTGCAAGTTGTAAAACAGTTAAATTGTTCTAAATTGCAGATGCACAAGGG
GAAAACGTTTTGCACGGAGTATGAGAAATCAAAGGTTCTTGCGGATAGAATCGCACTGCA
GGCAGCAGCAGACGGGGTGCCAATAACCATTGTCTATCCAGGAGTCATCTATGGTCCTGG
AAAACTTACAACTGGAAACCTTGTTTCCCGCATTGTATGAGAACCTTCTTGCCCATGAAT
AAGTCATATATACTCCCTCCGTTTCTAAATATAAGTCTTTTTTAAGGTTTCACTAGGGGA
CTACATACGGANNNNNNNNNNCATATTTTAGAGTATAGATTCACCCATTTTGCTCCGTAT
GTAGCCCCCTAGTGAAATCTCTAAAAAGACTTATATTTAGGAACGGGTGGAGTAGTTATT
TATCACACATTTGTGCATGATTCATAAAATACAGCGCCTTGACAAATAGTCGTGACCAGA
AACTAAACATTGGTGATTTTTCGCAGTTAATTGAAAGGTTTAATGGCCGTCTACCTGGCT
ACATTGGAGATGGGTATGATAGAGAATCATTTTGCCATGTCGACGATGTTGTTAGTGGGC
ACATAGCAGCTATGGAGAAGGGCAGGGTTGGGGAAAGATATCTGCTCACCGGCGAAAACT
TGTCATTCATGCACATTTTCAATATGGCTGCCAATATCACAAACACAAAGGCCCCATACT
TCCATGTACCACTCTGGTTGATTGAAATATATGGGTGGATTTCAGTTTTCATTTCTCGCA
TCACTGGAAAGCTCCCTCTTATCAGCTACCCCGTATGTCCCAGTATCTTTTTTTATCCTG
AGCATTTAACTTCATTGTTTGCACATAGTCCATACTTCTGTGTTTAATAGTGTCTCCATG
CTGTGGATTGCAGACGGTGCGTGTTATTAGGCATCAATGGGCGTATTCATGTGATAAAGC
GAAGAGGGAACTGGGCTACAATCCAAGAAACTTGACTGAAGGCCTAGCTGAGATGCTTTT
ATGGCTCAAGAACGAGAAACTGATCAAATTTTAGTGTCCTACCCTGTTATTGCTTCCGTT
ACATTTCACGCTTCATGTAGAACATGATGTTTCTGTACTAAAATCATCGACATGTATAGC
CACTATCTTGTTGCATCAAGTTGAGATGTAGTAATGATGTATAGTACTTAGTCCACCATA
TTCAGAGAAAGGAAGAAACAATATGATACTGGTTGATTCTATGCAGGCTGCAATTGCATG
AGTAGTTGCTTCTGGAGTATTATTGAAACAAAGACAAATCCAAAAGTTGAAAACAAATGC
ACCCAAAAATCTGAAATTCTTATGTCGGGTCTTTTGGAGTGATCCATGCTTTGATCAAGG
TATTAAACGTGGCCTTCTGAATACAGTTCCCTATTGAAATTACCCAATGCCATATTGAAA
CTCACAACATAAGACAATAAAATGAGTAACATGCAACATTCAGCCATTTCATAAAGCGAA
GTGCTCAATAAACAATGTACAACAGTATGGAATACTCAACTGAGCTATTTCAATGGCAAC
ACTACATGTAGCAGATAAATCCTCTCCTTTGGAAGAGTTTTGCTGAATCAAATAATCAAC
TGAAAATGTAAATAGTCTGAATATCAGGACAATTCTTGCAGCAATTTCCCCAGCGCATCA
GGAACAAGGGGGATGTGGAGGCAATCTTGGCCATCAGAGTGCTTTTTGATCTTTATAAGA
TCATGATCTTTAAATTCTGTCAGGTGGGAGTTCAATGTCACTTGACTGCTCACCAGGAAA
CGCTCACGGCATTTGGTATACAAGCTGCTGACAGGCATACCTGACAAGCATCGCAAATGT
GATTTAGTGTACAAAATATGGAAACTCTTACAGGGAAAATAAGTTCGATAAAACAGGCTG
CCCTGTGCTTCTCAAGAAAAAACACCACATTACTTACCTTCGTCTTTTTCATTTGCTAAC
TGATATTCAGCAAGAACTCTAAAGACACTTTGTGCATTTGGTGTCAGACTCTGAAGAACA
ACAAGGGCAGTTTTTGTGGTTTGTGCATGCCCGCCACTGGCAAGTATCAATGGATAGAAC
ACGCATTCAACTTTGTAAGGTGCAAATGTTGGGACATGGTACCAACTCCACTTGAACTGT
GTGTGCACCATCTTCTTGTCCCACACTACAGTAAGACAGTAATTGCCAGTTTAGGATACC
TTAAACAATGAAGGCATTAGAAAAGCAAGAAGCTCAAGATGCCAGGAACTTACATAAAGG
TGCATTGACATGATCCACTGATGCAACAATGTGGATTTGTGGACAGCAAGAAACTTGTGC
TAGACACTGCTGTGATTCAGCATCACGCAATGCAGGTCCATCTATATTGTGAATAAGAAG
GCACACGCCATCAACACCGTCTTCTGATGTCTGGTTGTTCAAAAACGAGATGATATCATC
CATTGATTGGGATGCAAAAGTTTGTGATGGTTGGGACCTTGTTGCTGACTGGCGTTTCCG
CTTAAATTTTGTCTGCTCCCAAAACATTTCAGCTATTGTTGCTATGACCTGAAATGAGAG
ATTAAGAGAGATAGGGTTGGTACTTCAAAGAGCATTGGTGTTACTCATCTAGCAATCAAA
TGCAGCTGCATTTCCGTTACCTTAAGGCATCAAATTTGACAATCTGGGTGTGCAAACCAA
GATCACACAGAAACTTCCTCTGGGTGTTCATTACAATACAACTATAAGAGCAAGTTTTTC
ATAGCAATTCAAGTGGTAGATTTTAATACGCAAAAGTTCACCCCTGTTTCATGTGGTTGT
TTCAACTACTTCTAATTCCCAAACCTGTTAGCTAACAAAGGTTAAATCCAATTCATGGAT
GTGAGCATTTTTTTTTATAGAAACCAAGCTTTAACTTAATATTGTACGATGAACTGATCT
CTCCAGTCTTTGGTTTGTTTGGCCATATAGACTGAAAGTTCAAGACAGCTACCCATGATA
CATGTTTAACAGTATTCTGAGCATTTAAAAGAGAGTAGAGAGGCAAGCAATTACACAGGC
AAGAGGTGAATATCAGGCAGAAGGCCATACTTGCTTCAGGTTGATTGACGGAAGATAACC
ATTGACCACAATGACAGTGAAATCAGTCAAGGTCGTGGAGGCAAAATCCTCCAGCAACAG
CTTCTTAGACCCAAAGCCATACATCAGCAGGCCGAAACCGCACCTGCGACAGGACAGCGC
AACCATTCATTTCGATCAACACTATCGCTAGTGGAAGCAGAAATGAAATATGTGTGGCCT
TATCAGCATCGGAACAAGGGCAGACCTCAGCTCGAAAAGCCAGTTGCGGTACTGCTCCTT
GTAGCTCCTCGTGAGGGCCTCCACCTCCTTCTCGTGCTTCGGGGGTATCTCGGCGAGGGA
TGCTCGCAACACCTGCGCAGATCCCAGATCAACAAATCGCAGCAAAACTAATGGGGGGCC
GAGAAGCGAAGGGGTCGCCGGAGGGTTCCGAGGATAGGCCGATTGGCAGACCTGCTCGTC
GACGAGGTTGAGGTCGGAGAGCTTGCCGGCGGCGGCGGCGCGGGCGCGTTTCTTGGCGGA
GGAGGGCTCCTTCTCCTTGGCGAGGAAATAGCTCCTGGAGAAGCCCGCCTCCGCCTCCTC
CTCCTCGTCTTCGGAGCCGGAGCTCGCCGCCGCTTGACCGCCTCTCGGGGCCATAGGAAC
TCGCTTCGTCTTCTCCCGCCGCCGCCGCCGCCGCCGCCAGGATTGAGGACGGGGAAGGGG
CACAGGCGGTTTAATGCTCGGTGTCAATTTACTTTCCCGCGCTTCGTTGCCTATTATCGC
GGCCTCGCGGGAAACGGCCTGGCTTCGTGGGCCGGGCTGGCGAGACGGTTTTGTTGGGCC
TCACAACAGTAATACAATTCCCCGGCGGAGGAGCACCGGCGAGGCTGCGAGGTTTGTGGG
GCGATGACGCCATGTGGGAGATATATCTCGCCTACTTTGCCTCGAAGTAGGCGGTTGCTT
GATAGCCTCGACCAATATGGGTTCTAGGGGTTTTAGAAAGCTTCTATGGCAGGTATTAGA
AGCTTCCGAATGGAAAAAAAAAATCATCGATTTAGAGGTTTATGTGTTTCTTTATGGATT
TTCTTTCGAGTTTTTAGCACACGTTCTACATTTTCCGTATGCATATGAACATACTTATAT
GCACATTCAATATTTTTCAAATACATGATAGAATTTTTTAAATACATATTTCAAACTTTT
TTGAATATACATTAACCATTTTGTTCACGGAACTAATCAAGGATATCCTTTGGGGGAGTC
TACGCAAGGGTCATTTTGATGTGTTGAGAGCATGCTCTCACTCATCGCCATGTGTCGTAT
ACTGGTTGCTTTCTCAGGAATTTTTTTTGTACGCGTTTCGGGTTTATTAAGTTTGTTTTG
GCTTTTGAGTTTTAACAGATTTTTATAGGTTTTGGAGAAAAACAAATGCACGAATTTCCT
TTTTTTCAATGGGAGACACAGATATGCTTTCACGAAAGGCACAAATCTGTCTTTAAAAAA
ACATGTATTTTTTCATGGAAGGTACGGATTTGTTTTTATGGAAGGCACAACTACGCCCCT
CAAAAAAAACATGTGCCTCTTTTTATTTTGAAAGGCATAAATTTGCTTTCACGAGAGACA
CATTTGTGCTTCTTGTAAAAGTAAAATTGAGTTCTTTTTTACTTTCACGGGAAGCACATA
TTTGCTTCTTGTGGAGGATTTATATTTACTTTTGCGAGAGGTACAGATGGACGTCTCAGA
AAGGAAAACAAACTTGTTTTTTTTTTTTTGCTTCCACAAAATGCACATATTTTCTTCTCT
GGGAGCCATAGATCGTGCCTTTCGGAAAGGGAAGAAAGGGAAGAAAAAAATATTGCTTCC
GACTTGGATTTTGTTCTTCCGGATTTTTATGGTAAAAAACGTTCGTTGAAACCCATTAAC
ATGTGATCTAATTTCAAAGATCTCGACGTGATAAATCCAACGGTCAAAATGATTTGGGAT
TTGGACAAAAGGTTTAAAAGATAAAATGTTTTAAATAAACAAAATCGATGAAAAAATGCA
CAATTGCCATATTACAACAAGTGACGTACATGCAGTGCAACATTTATGACCTTTGCAAGA
AGTATCCCTTAATAAATGATCTGAGACAAAGTCGTGCCCATGAGGCCCTACCTAACGTTG
TGAGGGCTTGCAAGACACGTATGGTGGTGTAGTACTTTCGTGAAAATATATCAATTACTT
ATCATCTTAACTAAGAGCAGATGAGAGTATTTATAGGAGCTCTTATGTCACACACAAATT
GTCACGATTCTTATGTGAAGTAAATGTTTGTGATTCTGCAAATATTGTTATTGTCCTAAG
AGGTAAATAAACCAGAGTGATGCAAATAACGAGTTTGTAGTAACGAGCTAATAACACTTG
AAAGTAAAGAACATAAATAAAGATGGAAATGGAGTTGTGTTTTCTGCAAATGGAGAGGTT
ATACGCGGAGAGAAGTCAGTTCATGGTATAAGTGTGTCATGACCAAGGCAATAGCAGTTA
TCTTGTATCATGAATATAGTGCTTGATATGTTTGTTCGGTAGGCAGAATTCCATTGTATG
GTCCTGCTTCTACGTTGCCACAAAGTGGTATTCTCCACAATTAATGTCCTTACACCGGAA
CCAAGCATTGAGCTTAGGTTTTTTATTTTCGTGCCCCTCAAAGCTTAGTCCTCCTCGGTT
TTGCCCACACCAACTATTTTCGCTCACTTTTCCCCTTCACCGCGCCACCCAGCCTCACTA
ATTCCCAAACGAGGGTTTATCGTTGGTTAATGGGGTTGATCGTCAGCCTCCCCTGCTACT
GAGGAGCGGGACACATCGTGCCACATGGAGCTCTCACAATCGGTCATGTTCGTGTCCGCA
TGCATGAGTAGTCACATCGTGGTCACGTTAACGCTTTCATACAGGGGCGTGGAGTATGCA
TTGCATAGTTTTCCCATATGGAGAGCCATGTCGCATATATGCCCGTCAGGGCCCTACTAA
TGAATTTTAATAGTTGCACGTCAATCGCTACTGTCCAATCATGTCCCCTTCCCTCGCTAC
CCACAACCTTCTTTGTCATGTGCCTGCACCAAACCCTAGCCGCCTCCCCCGCAGCCATGC
CCAGCCATGGCGGTAGCGGACGACACCCCGTGGCGTGCATTCCTGGCATGCCATGCATCC
TCCAGGTCGATGAAGGCTCGCTCCTCGCCCGGTGCGGCATCACGGCCGTCGAACACGCAC
TTGTCGATCGAATGTCACGTGAGCACTGGGGGCTCGCAGTGGAGCAGGTCCCCACTGTTG
GCACGTCGGCCAGGTCATGTGCAATAGGCACATTTCAAAAGAGCCTGTCATCGGAGGGGT
TGTCAAATTCGGACTACACGCCAAGCAGATGATGGTGGTCGCAGATCCTCACGCACGACA
ACACCGCCCGCGTCCAGCTCTACGTCGTTCACTACCCGGGGTCGCGCAACAACATCGATG
AGCGATACACCTTTTGGGAAGGGAAGAACTTCACCGATGTCATGGTTGCGTGCAACGTGC
AAATCGGCATGGATGAGGACGACCATGTTTCACCACCGCGATCCATGCCACATCTGCAGG
AGACGACAACGGTGCCAGCTGCAGCAGGGGGCTCCGCATTCCTAAGGCTACTCCCAATGC
TCCACCTTGTACAGGTGCTAAGGATGCCACATAGGGAAAAAAATCTGATGTGGCATGCTA
ATTAATAGGAGAGAGATGAGTGTGGTAACCCGAGGAAGAAACAATACTAAGCGCGTGAAC
CTAGGTAAAACAATTAAATGAAGGAAATGCACCAATGCATGCACAACTTTAGTTACAAAA
GCATTAAATAAGGAGGCTTGGCTACAATAAGCTTAGCAACTATGCATTGGGAACTTTAGT
TGCTAAACTATTTAATATGCTTAGCACAATCGGCCTAAGAGGGAGACGGGGACGCTAGGG
ACGAGCTCTCCAGTGCGTAGCGACAGCCTCCATGACAAACCTGGAGCCTGGCTCAAAACC
GTGTGGCGGTCCCCTGCTAGTCCCAAAGCCCGAGCCGGGGATGAGCTCGTAGGCCCCCCA
GCTCATGCCAAAGTCTGAGCCTGGGACGTGCTTCGGTGGCCGCCTGCGCATGCCGAAGCA
GAAGCTAGAGTCGCCGCTACTGTGAGTACATGGATTTTTTCACTGTTTTGATCCTTAAGG
CGTAAGTTCATCACGTAATGAACTCGGTTCGAAAGTATTTCACGTTTGACCCTTTTGGGA
ACGCCACATTCCGTGGCGTTGCAACCCTGTTATGAAACATCAGTCTACTGGACGTTGCGG
GCCTCGTGNNNNNNNNCAGTCTACTGGACGTTGCGGGCCTTCCCAGAAACGCCAAGTTGG
CTGGCGTTGCAGACATGAGGTG