Map Locations of contig_136790 (10140 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_136790

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5854 1 271 bp None Available Available None
MLOC_5853 3 1058 bp AK252987.1 Available Available None
MLOC_5855 3 1815 bp MLOC_5855.1 Available Available LOC_Os01g67510.1, FRAME:-3, EVALUE:0.0, 13101.m07337 protein recA protein, putative, expressed





CDS Structure of MLOC_5854






CDS Structure of MLOC_5853






CDS Structure of MLOC_5855






Contig Sequence (10140 bp)

>contig_136790 10140 assembly3_WGSMorex_rbca.fasta
TCACTGAAGATATGAAAAGTCTTCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCA
CACTCTTGGCTGATCATGAGAAATTTTTCTATGAATTTCTTCAATAATATAGTTGCATGC
TTCACATTAGTGCAGAGGTCGGAGGCATTTCTCATTTTTAAAGAAGTTAAGTGACTCACC
GATTACTTACTTGCCCCCTTAACAGGAGATAACTGAATTTTCCATGTCACCATTCACAAC
AAAGGCAATGAAAAGAGCTCTTGCTGGAAAATCAATTGTGATGGAAAGGGTTAAAATGGG
ACATACTAACTACCCAAGTACATACCTATTATGACTGAACTCTCACTCGGGTCAACTCAC
TCGGGCAAAATCGTGGTTGAATAGAAGGAGAGGAGGAAATAAATATGTCGTTTATAAAAG
CAAATCAAAATCATTAACAAGCATTTTCATCATATAAACAGCACCCAAATATCCCATCAT
ATTCGTTTATATCTTTGCAGGAATTTTGTAAAACAATTACATATAAGTAATGTTTTTACC
AATAGTCCATATCCTAATATTAATTGGAAATTGTTCATTTTTATTAGGCAAAACAAAAAT
TAAAAAAAAAATGGTCCTTGATGCCTCGAACGCAAGACCAACAAAAGCAAACATGCAAAC
GCTAGCCAAATTTTTAGCAAAGAGTTTCAATACTACTTGACGCCAAACGTAAGTTATTTC
CTATATACCCTATCGTCAAAGACTATGAAAATAGGTACATTCAACGATCGTGATGGCACA
GTCAAGTTCTATCGTCATAGACCTCGACGGTAGGTTGTATTACCCTCTCGTCAAGGACAA
TGACGATAGGAAAAAGTCAGATCAAAAAAAAAATTAAACCAGGATCAAATCGTGTTAAAG
TTTTCAAGAAAATCAAAACGGTGAATTCGGCCCATGCAGAGTCGTACAGCTACTCTCTGT
TTTTTCTTTTTTTTGAAATAACAGCTAGTAAGTGCTAGAGAAGGCTATCCCGTCGTCAAC
TTGGATCGTGCTGGCTTATTCCCGCTTAAGCCGTCCACGTCACGCGTGGAAACTAGCAGG
GGTACGGGACAGTGGGGCACGCACGCCCGTACGTGGACGGTGATGGATCAGTCATGAGGA
GACGCGTTGGCCAGGAGATCGATGATGACATCTTCGTCTCCACCGCATCGGCTGTTCCCC
TGATGCTAATTTCAAAAACAGGCAGAGTACGCCGGAAGTACCGGTGGAATTCGAATCCCC
CCCTATGTGCAGCGTGTTTCACTACGTGCGGCGACGTCGACGTCGCGCGCTCTCTGCCTG
CCACGCCGTTGCCGTGTGATGTTTCAGTCCCGAGTTCCCGACGTCGTCGGCAAGATCGAG
GTGGAAACTCAGGAGCAGGCGTCCCTCTCTCGACCGGTCCATCGCCAGCCAGGCCACCCA
ACAGCAGCAAACTCACCACTGTGACAGTGCCGCTTCCCTTTCTCGCCGTGAGATCTCAAG
CTCTCCACCGTGCCAGGGTACAAAACGGCACCGGTGCTATTTGTATTGAAAGCTTGGAGT
CGGTCATGGCTCGGAGGGCCACCGCATAACGTTAATCCGTGCTAGTAAACGGCCATGGCC
GCCACGCTCCCGCCTGTATCAGCAGCGGCAGCAGGACAGAGAATGTGCCTGCCAGGCACA
AGTTTGGCACCCCCACCCGCACCACACCCATGACCATTACCCAGGCCGAGGCCAGGATTG
AAACATCACAAGTTTGGCGCCTGTTCCCCGGCCGTACACAACCCCCTTAACACACTAGTA
CGTGGAGTACTTACCATGACAGCATCCAGCCAGGGCCAGCGGTGCCTCCGAGCACCCCCA
TTGGCCGGTTGCTTCTTTTCCAGGATCAAGACAGACAAAGACCCCAAGGCGAGCGCAGCA
TCAGCTTATTACGCTGATGGCAGCGCACATTAGCATGTGAGGGCGCATATGACCATGTCC
CCCGGGCTCTGCACGTACGGCATCGGCCGGTTTTTTAAACGGACGGCGACCGGCCGGACG
AGAGGCGCGTGGTGCTGGCGCTGGCCTCCAGGCTCCGGCCAGGTGCACCGCACCGCATGT
GGTTGTGGAGGCGACGCGAGCGGCGCGAGACGCGGTGGGCACGAGGGGCTTGCTAGCGCG
GGAATGGGATGGCTGGCTGGCGCAGCGGCCGTGGCAATTAATACGTCTCCAGCGTTCATG
CCGGCAGTACGCCGTGCTTTGCCCGTGCATCGAGATCGCCGTCGGACGGCGCCTGACCAG
ACCGAGGGCCAATAGCTGGTAGTAACTCGTGCTGCCGAGTCTGAATTTTCGGACCTGAAG
CTCGTGGCCTCGGGAGGGCGGCTATTGTTCAGGACTCTTCACGGACGTGCCTGTTTTTAG
CGGCCGGAGATCATAATACTACTCCTAGATGATTTGATCCCACATATAAGGAGCAGGTGA
ACAAACAACATAGTATCCATCTAAAGAGAGAAATGATGATCGGTTGCGTAGATCCTTCGG
CGAAATCATGTCGATTTCCCTTGAAGAGAAGGACTGTTACTATATGATATACGAATCATT
GGGTGTCAATTAGTGTTGGCATTCATTCAGGAAGGGAGCTACTCCTACCACCACGAGAGA
GATATTTAGTGGACGTTAAAGAACAGTTAGAGGCATCAGTACGAGAGTGGAGCGTACTTG
AATGGTGCACATGGGGGCTCAGCGGAAAGCACTTGTTATTGCCATCTAACCTTAACAAAC
GATGCTCATGGAACATTCATTGGGGTCGTTTGACTTGCTAAAGGAATGGCTAACCAATGG
CCGAAAGACAGAGATGGTGAGCTGCTAGGGTATAGGTGAGCGTAGCTCCCATCTCTTTTG
GACTCGGATAAAAGGAAGAAAAAGGAACCCCATGAAGTACACTAGCTAGTGCATTTTAAC
ACCGCAACCAACAAAAAGTGCTTGCACTGGCAACAACAAATCATTGGACGCGTTACGCCC
ACGTGGACATAACTCCCCAAGAAAGACCTGCTTTTGTCACGGCACCCTTGTTTTTCTTTC
ATAACTAAGGAGCGCCTATATCCTGGAGATCTCTGAATGCAAAAATCTTCACAGGGAAAA
TGGCAGATGACAAGCTTCAGGGCTCTGTGTGTTGCGCAATAAAACAATTTGCATTTCAGT
GCTGCCGGCTGCCGCTCAAAGCAACTGCTCTCAGGTAAGGCTGAAATGAAGCCTGAGAAT
AAAATTCATCCCAGAAGCAGCAGCAGGTCAGCTCTTCAGTCAAGAATAGTCAAGGCATGC
AACATATATACAGTACATGATTACATGCTACTGAATCCTGAGCCCTTCCCCCTCCTCCCA
AAACACACCCAGTGTCTACTCTAAGAAGCCACCTCCTCGTTTTCCAGTGCAGTAAGAACT
CAATGTCCAAGTCCAGAACACAGTTCGTGCCACAAGTAACATTCCTAGCTAACCTATCAT
CGCTGGTTCAAGCCTCGATTATAGCAGCCAGATCTTCTTCTTCTGATGTTTCAGGCCTGA
CAGTCTCCTCAGGCAGATCGCCCAGCATGTCGTCTTCAGCCTCTTGCTTTCTCGGTGGTT
CAGTCTGGATCAATCTCCTTAGCTCCATCTCCAGTTCCTTCGCAGCACCCTCGTTTTTAG
TAAGGAAAGATTTAACGGCATCTTTACCATGGAACTGCTGTTCGTTGAAAGAATAATATG
CGCCTCCAGTCTTTTTAACAAGCTTGTGCTTTAATCCAAGCTCGAAAAGCTCTGAACTGC
GGCATATTCCTTTTCCAAATTCCAGCTCAAACTGTGCGGTCCTGAATGGTGGGGCGTGCT
TATTTTTCACAATCTTCACAGTAACCTGACTTCCTATAATCTGCAAACAAAATTCATTGT
CATCATTTCCACAAGATTGTTAGATAAGCAGTGTGTATAATGGTTCAAGCCACACATCTG
ACATAGCATATGAGGAACCTAATCTGCAAGGTCAGTTATTTTTATTTTACCCAATGATTG
CATGGCTTAATATTCAATTCACTGCATTGATAGCAAAAGGCAGGCCCCTAAGAGTTTAGT
ACATGTCTAACATAGATTCAGCACAAAGAGACAATTGAAAAAAATAAATCTCATGCAGAC
ATAACCCTCAAAAGAAGTCAGTTTTGAACACTAACACCAACATGTTAAAAGTATGAGTCA
ATTCTCAAAAACAGCTAATGTTAAGGATATATGAATTAGTAAATTACCTCTTCACCTTTC
TTTACCATGCCAATTCGCCTGATATTCAGGCGAACCGAGGCATAAAATTTAAGGGCATTT
CCACCGGAAGTGACCTCTTGTGGCCCTCCAAATCCTCCCCCAAACGTCTGTACCTTAGAC
CTGATCTGCAACATATTCAAGGATAAATATTATTAAAAAATAAAAATATGTGAAGACGAA
AAGACTGGAGAGGTCATTGCAATGCCAAACATGGGAATTTTGAGGAGAAATGCAAGATGA
ATGTGAATAATAATGATGACCATCTCCAATTAACCATGCTCAACAAACAGAGGATCAAGA
AGAACCAGTTGTGTTGCTATAAAGAATGGAATGAAGTATATGTACTTTAATGTTTCTTAA
TCTTCAAAGAAAAACATTTCCTAGCTTTAGCGGAATGTTGTTCTGGAAGTTTCAAGGTAA
TTATACCCTCAAGTAAAGTGAAAATGGCTATCAAGACTTATTGACTTAGTCATCCACTCA
CCGTTGAGCCACAGAAGGAATCCTATGCCAACTTAGAAGTAAAAAACTCAAAGAAATGGC
CATATGATTAATACCTGATTAATAAATAACAAAACTGTCTGGGACAGTGAAAGAGAATGG
CTCAGCTTGCGAAGAGCTTGACTCATCAGTCTGGCTTGGAGAGCGACATGTGCATCACCC
ATCTCTCCATCAAGCTCTGTCTTGGGGACAAGAGCTGCTACCTGCACAATAGAATAAGAT
GAGTAGGGTAAATAACTCTGAAATGAAGGAAGAATTTTGGTTATTAAGATTGAGTGGCAT
GTTTAAAGTATTAACTTGCCAATGCTCTAATTTGAGCAGTATTGCAGCCATGATTAAGTA
GAAACTAATTCTGCTATGAAATAGAAAATCAGATGGGAGGGACAGCGCTCAAGATCTTAC
ACTGTCAACAACAACAACATCAACAGAGCCACTTCGAATCAGCGTGTCTACAAGACTGAG
TGCCTGCTCAGCAGAGTCTGGCTGAGAGAGAAGTAAGTTACTGGTGTCGACACCAATTGA
CTCTGCCAGAGTTGGATCCAAAGCATGCTCTGCATCTACAAATGCACAATAACCTAGCGA
CAAGGCAAACAACAAAAATAAAAATAGTTAAGTTGAATTTCTAAAACCACAGGACTCATC
GTTTGATTGTACTTAAACTATGTTTCAATTCCTTCAACAAGTTTGATTGTACCAAGTAAA
AAAATATAGCTCATACTGAAACAAAGTAAATCAGGGTTATGGAAGAGCTCCGATTCATGG
ACTCATCGTTGACTTATCTTCATATTACATACTCTTATGCATAAAATTAGTTTTTCGCCA
CACTCCATGCTCTAAGCATACAAGAGCATGCATCATATCAGATGCAAACAGAGAGTGCCA
AATAAAATACACTGGATTACAAATGTACAGCACAAATAATTTGGGAATTGACATCAAAAG
AAACCTATTGTGACAACTTTTAGCCAATTGTTCAAATAGTTTTTGGTTTAATAGGCAGGT
TTGAGAAGCAAGAAATGTACAAAACAGAATTAACAATACATTTTAAGGTTCACGTTATAA
TCAGTTGCAGGTTAGCAGAACCTTTATTGATGCATGCTACATCAACAGCAGATGAGTAAA
TAATATTGCTGAATCACCATCTGGTCAGTCCTATTCGGACATGCTACAAAATCCACACTT
ACTTCCATAGACTGAAGGGGAACACAGAAGGGTCCCACTTTTCTCTAGTACTAGTAATTA
GCCAATCACAAGCAAAGGAAAACAGAACATGAAAAGGAAGTCAGATTCCAAAGTTTTGGG
CTTACCACCACCGCTAAGCTTTTGTGCTTCTGCAATAACGTGAAGAGCAAGAGTTGTCTT
TCCTGAAGCCTCTGGACCGTACACCTCTATAACACGTCCCTGCAAAGAATAATGTCATGC
CAATTTTACGAAACAAAATACATCATTACAAGAAAACCATAAACGGTTGCTAAAAGATAA
CACTATAAACAGGACTACTGACTAAAGTCAAATGTAAATGAACAATTTTGTGGTACCAAG
CAGATTACAAATTGCAACTTAATCAGCATCAAAGACCTTCCGCTCTGAAGAACATCTGTA
ACTTTATGGGAATGTGTACCTTTGGAAGCCCACCAATTCCCAGTGCCAGATCCAAAGAGA
AAGATCCGGTAGACACAACAGGTACTTCTCTATGACCTTCAGAGCGGCCAAGCCACATTA
TTGCTCCTTTTCCAAACGAAGTTGTTATTTGATCAATGGCCTGATGTAAAGCCAAGTCTT
TCTTTGACATGTTCTCCTCACCGGAGTCGGTTCCACTTGACTTTGACTTCTTTTTGGCTA
AGCATACAACAAGAGGCGAATCAGTAAATGATTCAGTATGTAGTACGAATGGAACATAGT
TGGAGCAAATCATGCAGTGCAGGCAACAGTAAGAAGTACTAGGAAATGATTCATTAGGTG
GTAGCAATGAAGCATAATGGAAGAGAAACAAGTAATCATGCAACTGAATTTCCTAAAATT
ATACGTAGGTCCAAATATCAGTTCGGACAACAAAATTAAGCGGTTATAAATGGATCCACA
CATTGCAATGCTCAGAATATATGATAGAATATGTGCAAGAACATAAGAAGAAACGATGTG
TACAACCTTTAGATGCGAAATCTCGGCAATGAAAGGAAGAACCACAGATCACCTGCCTAT
AGCTCTGTAGAAATGGTAAAGCATTAGCAACAACATATCAGTGTCCCAGTGTTCATAGAC
CATTGATTCTCATGAAAGTGTCCCACATAAATCAGCATCCTTTTATAGCCCATTAGGGAG
AGACACTTGGTGAACTCTAGTGCACTATCACGTTTCCTTGAGTAATTCCTTTTTAACCTT
ATCATGTGTGATACATTTCTTTCATTGAATTTATTTAATCCCTGGTGGATAACAGCATAC
CATAAAGGCGCTGCAAACAAACTCTTCAGGCCAACTAGACTGCTACGACTTGCAAGGATG
AAAAATGCGTGGGACTAATCTAGCCTTCCGAAAGCAGTTAAATGTATTTTCAGCATTGCA
TCACTGGTAAACCTAAATAAAGCAGAGAACATATTATGGCAAATTGCCTTTTCAAACGGT
AAGCGCAAAACAGGGGATAATACCATACCTTAAAACAAATCGGTAAAAGATGGTGATTAA
AACTGCGCCATCTGGTGAAATACGCTAAACTGACGCGGGCTTACAGGCTCGCACGGTGCG
GAATCGAGATTAAAACAGGAGAAATCGGCCCCCACCAAAAAGGAACGCAACCGATCAAAC
CCCGAGACCAGAGTAGGGCTCTGGCTTCCGATCACTGCAGCGGAAGCATCGAGCTCGTCC
GCTGTGGCTACGCGCCCCCAACCCCCAACCCACCCGAAAATGAAAACAGCGCACAGCGGA
GAGGGCAGGGGCAGGGAGAGTTTTGACCTCGGGGCAGGAGGCGGCGGCGGAGGCGATGGC
CCGCCGCAGCGACGCGCGCCTCAGGAGGGTCGCCATGGCTGCCGTCGGCGCGCTCGGTGG
TTCTCCGTCCCCTGCAGCCGCGAGGGGAGGATTTGGGGAGGGAGGGGGGCTAGGGTTTAG
GGTTTTACGCGCTCGGTTTTTTCTTCTCTGCTCAGTGTTGTTTTCGGCCGCCTCCTCCTC
CTTTTGTTTTGCTCCCCGTTCTCGGGCGACGGGAAGCGCGAGCGAGCGCCCCACCCCCAC
TACTGGGCACTGGCCCGCACACCACCATGGGGACCCGCGACGACCACGCGTGGGTGGGAC
CCACTTGTCTGCGTCGACGAACTGCCCGAGACCTGTGTGGACCACGTCCACACGGAAGTG
TAGTACGACCTCCATTTCCTTTCCCTTCCCGTGTAACCGCAGGCCCACGCACAGTCAAAC
AGCACGGCCGCGTTCTCTGGATTGGAGGCCCAACAAGAGGCGGGAAATGATCTAACTAAA
CTGACCCATACGGCCCGGCCCGGCCCGACCCGACCCGGCCAGTACATTCGTCTCCCTCGA
GCGAGATCCGGCTCCCCTCCTCCTCCACGTGGGATTCGCGTGAATTTCCCGTCGTTTCCC
ACGGGCTGTGCCGCAAACCATCAGCTTCGGAGAGGCTCGCTCGCTTTGAGTGAGATCCAG
TTCTTGGGCCGCCATTGCTGCGGCGCCCGCGTCCGTTCCCAGCAACAGCAGGAGGTCTCT
GTACATGCCCGTCATCTCCCCCCTTCCTTTCTCGCTCGCGCCAACGCCGGCTGCTCCCGC
GGCGTCGCGAATTCGCCGGAACGGCTTCCCGCACCACCGGCGTCTGCGAGGTATTCCGAG
CTCGCTTTCTCTGTCTGAAGTTCTTCATGTCTCCTTTTGTGCTTCAGACGAGACAACTAT
ATGTATACTGTTGGTGTTGCCTTGGCGACTTGTCGCTGACGGTGGATCGCCCCATTCGCC
ATGCTCTGGAATGGATACACTTGAGGCTGAAACTTGGGAATGTTCTGCGTATTCGATTTG
ATATCTGGGTTGCCTCTGAAGCTCCCGTTTCAGCTGAACTCAAATGTGCACTGCAGATGC
GAATGGGCTGATCTGGACTGTGGTCTTGGACTAGACCTGTACCACTTGATGTTGGAAATT
ATGCACTAGGACTGCATACGTTCTTGCTCCACTGCTAACTAGTAGTGCAATATCGTTTCA
GATCAAGTTGTTCAATTTACTTGAATTATAATTGGTTCTACTGGACGTGATGGAAGTGGA
AACACTTAGCACTGGGATTTATTAGCATCATCTCCTACGAATAGGTGCCTGATGTTTTTT
GTGTGGTCTGACGCTGCTGTCAGTTGGAACAGAAGCAGGCATGTGCAGCAACGGTTTTGA
TTCAACCAACTGCTTTCGTATGGAGGAGCTCGAAACAAATTTGTCCCCATTTCTCCACAA
GCTTTTTAAAGAGGTTAGTACTGTTTGCACTTCTGTATGTTGTTGATAACTGTAACAGAA
AGGAAACTGAATGTATTGTGAAATGATGAATGGTTTGTTGCAGTGGGATGACCGCAAGGC
GAGGGGATTGTTTCACCACGACATCACTACCTGCGAGACCAAGGTTTCACATTCTTCTCT
GATTAACTATACTGAGAATTCTCTGGGTTTTTCCCCTAGCTGAATTTCCTACTGTCACGT
TGACAGGTGCTACCTGGAGAACACAATTTTGTTGCAACATTGATAGAAGGGCGTGACCAG
AAGAAGCGGCCAACTGAATTTGGAATGAACCAAGTCCTCCAGCCATTTCATAGTGAGAAG
TTCAATTTCACTAAAGTTAAACCACAGGAGGTGATCTTCAGGTTCCAAGAAACTGAGAAT
GATTCTGCCCAGTATTTTGACGGAGCTCCTCCCACTGTTTCAGCTTCTCCTAGCAGCATT
TTAATCAACGTCAGTGTGTCTCCATCTCTGATATTACTTCTACCTCAGACAGCTTGAAAA
CTGATTTACCGTTTCTGTATTATGTCTCACAGGTGAGCCCAATTGGGTACTGTCATGTGC
TTTTGGTCCCTCGAGTCCAGGAATGCTTACCGCAAAGGGTTGATCAAGAGAGCTTCTTAC
TGGCCATGTATGTCGCAAAGGAGGCAAGAAATCCCTTCTTCAGAGTTGGCTATAACAGTC
TGGGTGCCTTTGCAACAATCAATCACCTCCACTTCCAAGTTAGTCATACTCAAACTTCAT
TGATTATCTCTGCTTTATGCTCGCCCTCTCACAGATATTGCTTGTCAGGCATACTATCTG
AAAGTGCAATATCCAGTCGAAAAGGCACCAACAGAGGAACTAACAGTCGTAGGGAACGGT
GTCAGCATTTCTCAGCTGGTGCAGTACCCAGTAAGCGGCTTTGTATTTGAAGGAGGAGCG