morexGenes - Barley RNA-seq Database

Contig contig_136788

Source Contig contig_136788

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_136788 (6197 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_136788

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5852	6	5730 bp	MLOC_5852.1	Available	Available	LOC_Os05g05860.1, FRAME:-3, EVALUE:0.0, 13105.m00623 protein retrotransposon protein, putative, unclassified, expressed
MLOC_5851	1	676 bp	None	Available	Available	None

CDS Structure of MLOC_5852

CDS Structure of MLOC_5851

Contig Sequence (6197 bp)

>contig_136788 6197 assembly3_WGSMorex_rbca.fasta
CTCCCATCGCGCCCCAACTCTTCCCCCGCCCAGGCAGCCGGATTCCTCCCTCGCCGCGAT
CAACTCCCCTTTGCCCGCGCTCGCCCGGGTCCGTGACCTCCCTGGCATGAATCGGCTCTT
TTCCTCCACGCGGTACGCGGCCGTCCGGCCCGACGTCCTCACGTCCGGCATGCTCGCCAT
CGGGCTCTGCCAAGCCGGCCGCACTCAGGGCGCTCGATGGAATGTCCGGCCCAAAACTCC
GTGCAAGAGCGGGAGGATCCAGGCGGCCGACGGACCCTGCCGTGTCGGGAACGTGATTGC
TGCTTGGCAATAGCAATGTGGTTTTGTTCCATGAGATGGTGGATGAAGGACAGTCACCAG
ATGCAGTCATGTGTTTTACTTTTAGCATGATATTGGGATTCTTTAGCAGGAGGAATAGGT
TACAAGAGGCTTGGTGTACACCTACAATACTTTCTTGTCTGGTCTGTGCAAAGTAGGAGA
TTTCTCAACTGTGGATGAGTTATTGGGGAAGATGATGGTTGCCTGCAAGGACACGGATAT
TGCAAAGTTGGTAATATGACGAGGCATTGAGGATTTTCCGTTCTATGGATGAATCCGGTA
TTCAGCCCAACACTTTGATTTACTTTCTCTGCAAGACTGGATATACTCGGTGTATATGTG
CATGATTTTAAATCTACATCTTATGTTCTGATGCAACAAATGCAGGATGTAATTTTCTGT
TGCATCAAAAAGCTAGTTAACTCGGCGTATGCAGTAGCAACCACCAACCATTCATACTGG
AGCAAAGGTCCAAGTATAGACTGGACAAGAAGCAGAGGCTGCCGGTGCCGCCCTTTTTTC
CTGCTAACACTGGAAGTGAGGTACCATTTCTGTCAGTTACTCATTCCTGCAAGATAAACT
AATGATTCATCGTCTTAGCAAGCAAGACACATCACTTTGTCGTAGCATTAACTTCAATGA
AATAAGATAAGAAGGCTAAGCTCCAACTGAAACTTTTTCACTGTACACTTGTAGGGCAAA
AGCCCCACAACAGAAACATTATTTTTCTCCAATAGAAACATTAGCATTACAATCCGATCG
ACAACACAACATTAAAGGCTTTGCCTATTCTGAAGAGCCGGCACTAAGAGGCGTATTACA
TTGATTGTACATACACTCTAGTGCTGCTTTTAGCAGCGCAGCGAAAATACAAAGGCCTGT
CCCAGAGACATACAAGGAAACACGAATAGGTTTCCTTGTGTCTGGTGGTTCTGCATCAGC
CAGCAGCCATTTTCACGAGTCAGTGGCTTCAAGTAGCAGTCTCGTCATCCATGTTAGTTG
TTTGCGGCCCGGTGGATGACGGGGAGTAGCTTGTGCTGGGGCTGCATGGCAAAAATTGCA
ATTGTTAGAAGAGAAAATGGATGGTGTGTACTTTCAACACGGCCGGGCAGATGAGATTAA
CTTGATGCATTACCTGTAGTTGGGGGAAGTTGGGCTGTAATCTGGGCTAGGTCCTCCAGA
GGTAGTGTGCGGGCTGCAACACTCAGGCAATGCGTTAGGAAACCCATGTCTTGATTGCCA
CAATAACAGCTAGTGTTCTTAAGTCAAAACAAGGATGCATGATTATCAACTGAAATGGAC
TCACCTTGTCGGGCTGTACAATGGGCTTGGTTGTGCATATGATGGTGATGTGGGTGAGTA
AGTCGGCGAGGCAGGGCTGGGGAACAGAGATGTAAGCAGACTAAGCATCAACAGATGAAT
GCACAGATGCCAAAGCTATCAACAGAATACCTGTAGTTTGGAGGAGCTTGACTGTACGGG
CTCATCATCTTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACGAGGGCGACGTT
GGGCTGTAGCTCGGTGACGTCGGGCAGTAATTCGGTGAAGTAGGGCCTGTAGCTCGGTGA
CGTCGGGCAGGTAGTTCGGTGAAGTAGGGCTGTAGCTTGGTGACGTCAGGCTGTAGTTTG
GTGAAGTAGGGCTGTAGCTCGGTGATGTCGGGCTGTAGCTCGGTGAAGTAGGGCTGTAGC
TTGGCGACGTAGGGCGGTAACCAGGCGACGTAGGGCTGTATGACGAGGGCACTGTAGGAC
TGTATGATGGTGATGTCGGGCTGTATGCCGGAGAGGTAGGACTATAGAGTGTCGATGTTG
GACTGTAAGATGGTGACGTCGGGCTGTATGCAAGAGATGTCCGGCTATAAACTGGGGATG
TTGGGCTATATGCAAGAGATGTCTGACTATAAACTGGTGATGTTGGGCTATATGCAAGAG
ATGTCGGGCGATGAACTGGGGATGTTGGACTATAAACTGGCGATGCTGGACTATAAATCG
AAGATGTGGGACTATAGATCGGTGATGTTGGCGAGTATGATGGACTAGTTGGACTGTAGG
AAGAAGAGCCAGGCATATAGGATTGGCTGTAGTTTGATGGGACGGGAGAGAACGCCATGC
CCCCAACATATGGTGAAAAATGAGCACCTGTAATGGGGGAAGCCCGGTAATTTGGACTCA
GCACCGGCGACATCATTCCTACATCATGGTATGGTGTCCCGGAGATGGGTGAACAGACTG
ATGTCATGCCACTGCCATAGTCCAGACCTTCAACATAGCTCGGGAGTTGAAGCTCAATGG
CCTGCTTCAGCATCTCGTCATTCAGATACAATTCACAGCCTCCTGTACCAATAGGAGCGA
GCTGGCCAAGCATAATGTTCTCGGTGACACCTCTCAGGTAATCAGACTCCGCATACACAG
CAGCATCAAGCAAGATATCCACTGTCTCTTCAAAAGAACATCGCATGAGAGGTCCTGTGT
CATTGCGATTTATACCGTGCCTAGTAATAGCCATCAGGTGGCCTCTGTATGTCATAGTAT
CACAGAGAATGGCCAGATGCCTGTAGTTCACATAAGACCCATCAAAAGATATCACCACCC
TCAGCTCATCCAAGAGAGACCTGCGGACAGCCTCGATCCCAAGAACCTCAATCACTTCGA
TCAGATGGTTACTTGTTGTCCTCGTAGCGTCAACGTCCTCATGGCACATCACAGCCAAGA
GGTTTACACCTTCTGTATCAAGCATCCACTCATTGTTATCTGCTTTTCGAGTGAAACCAT
CATTTTCATCGAATTTATTCACCTTCCTCTCTTTGATGAAGACCTTGTTAATATCTGGAA
TGCCTCCAAGGGCCATCTCAGTCAACATGTTACTCTCAACCTTCTTGAGGAAAACCTCAT
CATCCTCATCCTGTTTTGGAGCTTCGTCGTCATTTTTAATGCGGATACGAAGGATGAGCT
TATCCGCGTTGTCATCGTTGAATATGCAAGACAAGTCGTCATCAAATTCACCTTTGATCT
TCTCTGCAATTTCAGCCATGCTCAACCTCTTATCGACCATCATCTCACGGTTCAGTTCGA
TACGCAGCAGCCAAGGAGACAGCTTATCCGGGTCAATATCCTCATCAGGCATTTCATAAT
ATGACTTGACAAATTCCACATCCTCTTCAATGATGGTTCCTAGAGGATCAGGATCGTACC
ATATCTCGGTGGCATGGGTCACGTTACGTAGGGTAGTGTACTCCAAGGCACACTGGACAT
TCTTGGCCAATTCTTTCTTCTTGCTCACCTCAGGATTTAGGAAAACAGACAGTGATGGGG
TTTTTATCTTCTTGGCAACGTTAATGATCTCCCTTAACCTGGGAACGCCAAGGGTGACAT
TCTTTGCGCTAACACCAGCATAATGGAAAGTATTTAGCGTCATCTGAGTTGCTGGTTCTC
CAATGGATTGTGCAGCCACGCATCCAATCATCTCACCAGGAGCTACCAAAGACTGTTGGA
ATCTCGACTCGATCTCACCGATGACCCATCCAAATGATTCCCTTGTGAGCCTGTATTCTT
TCAAGACCCTCTTGCTAGCAAATGTGCTACGGAGCAGGATATTGAAGAGCAGAGTAGCGT
TCTTCTGAGCCTCGACGCTCATTGCATCGTCTCCTGGGACAACCTTGAGTCTTTCTTGCA
ACTTATCCATTGCTTCCACAATTTCCATTGGGTGCATGTCAGAAGATCTTCTCAAATCAA
TCTTGAAAGTCTTTTGAGCATTCCAGATAAGCCGCTTGAGGTTGACAGGCATAGGCCATG
TAATGTCGCCAGTTGTGACAATTTCAGTTCCAAGCTGTAATCTGTCAGCTTCTAATTTCT
GAAACTCTACCTCAAACACAGTTGTGATGTCACGATTGCTCTTCAAATCATCAGCTTCTT
CAGGCGACATGTAAGTGGGCCTCCAGTTCTCATCATCCAGTTCATAACGGAACACATTGT
CAAACTCAGCCTTTTTCATCCCCAGGGAGTCCAATTTTTGGGGTTCAATCCAAACAGCAT
CCATGCCATCTTCTCCATACAAGAACTGGATGACATCACCCAGGGAGTTCCTCACGGTAC
CATCATATTTGACCATGATGTCCTCCATGGCTTTCACGAGCCTCCGCTGAATATATCCAG
TCTCAGAAGTTTTCACAGCAGTATCGATCAAACCTTCTCTACCACCCATAGCATGGAAGA
AGAATTCCTCTGGTGTGAGGCCTCGAAGGTAAGAGTTCTCCACAAATCCACGGCTTTCGG
GGCCGTAGTTATTTTGTGAGAAGTGGGGCAATGTACGACCAGCAAATCCAAATGGGATCC
TCTTGCCCTCAACATTCTGCTGTCCGACACAAGCGGTCATCTGTGAAATATTAATGAAAA
TGCCTTTTGAGCCTGCAGTGACCATAGCTTTCAAATTATTGCCATCAGACAAACTCTTCT
GAGCACTACTACCAGCATCATCACGCGCCTTGTTAAGAACCTAGCATGGAGAAACAAATA
TGTCAAAACAGGTCTACTAAAAAACTGATGATGAAATAACCAAACAATGTCATTCAGCAC
TACCTGATTCACTTGATTTTCAAATGATTCCATCATTGTGCGTCCTGGCTCAGGTTCTAA
CTTCTTGTTATGCGCTTTCTTGATAAGCTCATCCACATCAGTCTTAGCTTTTGATATTGT
GTCACTAATCTTCTTCATTGTACCTGCATCTGCAATCGTATCCCCGATTCCGATACTGAA
GCCATGTTGCAGAAGCCAGTAGTTGACCAGCCACTGTGTATGACCCAAGAACTTCCGTGC
AGCATCTGGCCCCACCTCTTCCCTGCAAACAGTTAAACCAAAATTATTATTTAGCAGTGG
AGAACATGTGTACTAAAAAGAGAAACTGCAGTGCGACTTTTATAACTTACCAAATAACAT
GAATAAGACTTCCCATTGATGTCCCAAGTGTTTTTTTGCAAAGTATACCAGACAGAAGCT
CTCCCTTCTCTATCCGGACCATAGTATCGCTGGGAGTAATATATCTGCTTTCTTTTTCAG
CATCAGCGTCATGCCAGGCTGAAAATCTAATTAAATTGATTTGCTTGGGGATAATCAAGT
TGAAAACTTGTTTGCCAGTCCAAATTGGCCTTGGTTTCAAAATAGCAGGGGCAGGGACCT
TCCCATCAAAATCTTCCCACCACATTAAGATGTTCATGAATACATCCTGGGAGATATTTC
ACAACATTAATTAAGCTACAAAACTATAGAGAGAATACCACTATTGAAGGTGTTGCTTAA
GGAGAGTATTAGTTCACCTTTTCGATGAGAGTATCCCTTTTGGTAATTTTTCGACAGCCA
AGAAGTGTGTCTTGGACAATACCCATAACAGGTCTATTCGCTTGAGGTGAGACAATACAC
TTTGGCACCATCATCAACTCTAAAACCTCAGCTCTGGTTTTAAATGACTAGGGAACATGC
ATATTCATTTCATCCCCATCAAAATCTGCATTGTATGGCGATGTGACAGACAAGTTGAGG
CGGAAAGTTGAGTAAGGCATGATTTTGAAGCGATGCCCCATGATAGACACTTTGTGAAGA
CTGGGCTGCCGGTTGAAAAGAACAAAATCTCCATCAATGAGGTGCCTTTCCACCTGAGAT
GAGAAGTCGAGCACAAAACGGGTGAGGCTAAAATAATGGGCAGTTTTTGTGATGTCTCCA
TTAAAACAGTAGGTAGATGCTGCAACAATGGCTACTGTTACTGACCTTGTAACCCAGCTC
CAGATGCTGATCACTACTTTTCTTCACATAACGAAGATCCAGCCTCTGGCTATCTTCCCT
GATAATGTACTTGGCAC