Map Locations of contig_136684 (9776 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_136684

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5775 1 1267 bp AK362680 Available Available None
MLOC_5776 3 1772 bp AK364632 Available Available None
MLOC_5777 8 2929 bp AK362067 Available Available None





CDS Structure of MLOC_5775






CDS Structure of MLOC_5776






CDS Structure of MLOC_5777






Contig Sequence (9776 bp)

>contig_136684 9776 assembly3_WGSMorex_rbca.fasta
TCTGGTCATCTAGTTTTTAAAATCTATAGTATAAACTGCCCTGTTTGGAAACATAATAGC
TTATAAAAAACAGATTATATAATCTGGATGAATCCAAACAGGGCCTCTAGATCTCTCTCC
AGTCATATGCAATTACTCCGTCATCGCCACAGAAACTGAAACTTACAGCAACTCGGCTAG
CTGTGCGACTAAATTCCAAATAAAAAACCATTGTATTGAGAGCATCCGCCAGTCATCGCT
TTCGAATAGCACAATTCAGAAAGTATCTCAAAAGTGTAACAGCCTTTGTGTGTTCGGTGC
GTTATGTTAACCTTTTTTTTTGTAGGCTATTGGCAGTTCCCTTGGTCTGCTCTTCTGTGG
GAAGGATATCGAGCCAGTCTGGGGCCGCAAGGAGTTCTTGAAGTTCATTATCTTGATCAA
CTCCATCTGCGGTGTCCTTGCCTTCTGCATTGCCGTTGCACTGTACTATGTCACCGGGAA
AGAGAGCTTCCTGTAAGTTGTAAGCCAACAATCTGTTAGTATGTACTAGTACTCAACATG
CTACTTATTTTCCATTTAGCATACATAGACATAGTGGCTCCATTTGTGTGCTTATTACAC
TTCTATTGGATAATCTTTCATATTTGTATTAGAACACTGCGGTACTATGATTGTTTGGAC
TATAATACGATTGTCCATGAAAATGGCGTGACGCTGCTGGCTGAAATATTGCACATTATA
ACCACCAGCTAGCTAACCTTGTTATATCATGATGTGCAGTGTGACGCCACTTTCTGGCTT
CCATGGCGCTCTTGCTGGCTTTCTGGTTGGCCTGAAGCAGCTCTTGCCAAACCTTGAGCT
CCCCATGTGCTTTTTCTGGAAAATTAAGGCTAAGGTACATTGATAGACCACTAGCACAGT
ACAATTTCTATGGTCTATGGCTGTATAACTGTATTGTTGCATACTTCTTCCACGACAAGT
TATAAGTTTGTTGATGTGGAGTTCTCTGTCTCTTTTTGTCTTCCTTGCTGCTGCTGCAGT
GGATGCCATTCTTTGTCATGTGCTTCTCAACTATCATGGCCTTCATCGTGCCGGATTCCA
TCAACTTCCTGCCGACTTTGTTGTCTGGGATGTACGTCAGCTGGCTTTACCTGAGATACT
TCCAGAGGAACCCACTGACAGGACTTAAGGGCGACCCAAGTGATGACTTCTCCTTCCCCA
GCTTGTTCCCAGATGCCATGCGGTAATTTTGAATTCCATTATACTAAACTTGCAAAGGCT
ATCCCATTGACCCAGCTTCTCAACTAATCTTTACTGTGTGTGATCCTTGCAGGCCAGTCA
CAGACCCAGTTGCTAACATGTTCGACCGCATGTTGTGTGCGAGGTCCAAGACTTCGGAAA
TTGCCCTCCCAGTTACCGATCCTACCAAGGCATCGAGAAGAAGGTATAGTTCACACGCAA
AACTCAGTATAAACGAACCCACAAAATAGTGGCAGTGTGAGGCTGAAAATACAAAATCAC
GGGTTCACGGAAAAACCTTTTATCTTTCCGGAGCTCACCAACTCAATTCTCACCAATTGC
AGGGAGCGTGGCGAGAGGGTTCTCGAGGAAAGGATGGCCGCGGATCATGCGGCTGACGCC
GAAGCCCCAGCTCACTCCGCGGAAGACTAAGAGCTTCTTCCTCTCCTACGCCGTCATAGC
AGCCACGGTCGCCTGCCTCCGTGCTTTGTAACTCCCCGGACTTGTTCTCTGGGGAGCATA
TTCATTTTTACAGTGGACCGATGATATGATAATACTTTACCGCCCTTTTTTGTTTCCTTG
TTTTGCGAATATTGGTTGGTTAAATTGTGTTGTAGTTCCTGATTACAGTGAGGAAAGAAG
AAAAAGGGTGGCATCCCCTGCCCCAGATGTTGTAATGTAGAAAGTGGGAATGACTTGTCA
GTAACATTGTTAAGTATTTTTTCCATGTGCACTGTGATTTCAGTCAAGACAATGATGGCT
CAGAAGGACAGGCAATAAACTGGATGTGTTTGGGATCCAGCCCAACATATTTGGTTCGAA
TTGGTCTATTGCTTTCAAGATCTTTGACACAACGCATGTGATTGAAGAAAATTCTCATGA
ATTTTTGGTTGATCTGATCTGAAGGCATAAATAGAATGCAGATTCCGAAGAAGAATGTAT
ATCGTTTTAATTTCAGTTTGTACGATTTTGCCAGTTTTTTCCAGTTTGTAGAAGTTTGCA
TGGTATGTATTTTAGTTGCTACTTGGAAATATTTTTTTGTTCCAATGGTGTTTGGTATAT
CAGATTAAATAAAACCATACGTACACCCACTTAAAAACACCACAATTGTTATACAATTAT
AGTATTTCTCTAACTTTGTCTTCTCTTGTGCTGACAATACTGAAAGAAGATAGTCAAATG
AAAAGCATATGCAAAAACAGCTTAACCAAACGAATGATTCGTTGGGTCAAACACGGATAG
AATTATCTGCTGGAAGAGTGCTAGTTCACAGATGTGAAATCTTATCGAAAATTGGAAGGT
GCAGTTGTTTTTTTCTTTTCTCCGTGTGTCAAAAATTCCCCTAAAAAGTTAGATATATAG
ATGTCGAGTCCTTTTTGCGTTTGTAAAACTTGTGGAAAAAATATAAGTGTTGCTTTTTCT
AGAGCACAAAATTAAGGCACAAATATGTTATTTTCTCAATCAAAATTTACAAGTACATGA
ATAACATGTACAATTATATATTTTACAAAATATATATATTTGCGATCAAACATTTTAGAT
ACGATGCCTTCGAGAACCACGAGTCTAAAGACACTCGCAAAGTTTTTAGATATTTTGATA
TGAATCGCCTTACAAGTTATTGAGTAAATTGCAAAAAACCACCGCAATTGTGCAAAAGTT
ATCAAACACCCACCAAAATGCATGTTTTATGGTTTTTTCCTGAAGCGTTGAAAACTTCGC
CCCAATTATGATGGTTTTTTGCAATTTACTCCAAGTTATTCCGAAAACCTCAAACAATTA
CCACGCGGCAGGTGTGTTTTTTAGAGAGAAACAGCAAGTGTGGTTAGTAATCTTTAAATC
ATTCAAAAAAAACAATTAAGATAAAAAAATGCGCCTCTATTTTTTGAGCATATAAAAAAT
TTGCCTGTATTATTTCACATGAAAAAAATAAGTGCTATTGAGTTGGGCCCATGGTTTTGG
ATCGGACCGGACCGGACCGGACCGTCTTTCATGGTTGGACCCAAGGCCTGCCTAGGCGAG
TAGACACTGACTGACATGTGGGCCCGAGGCGTCGGGGTGTTAAGCAGACGCGGCCGCATT
GGGCTTTAGGGTTTCCTCTCTCTCGCCTCCCAATCCGCATCCCCTCCATCTCCCTCTCCC
ACTCCGGCGGCGGCACCAGCAGCGTCAGCGGCGGCGTACCCCTAGCGCGGAGGAGAGAAG
TAGTCCGTCCGGCCATGGCGACGATCGTGAACACGACGGAGGAGGAGCCGATGCTGGCGG
TGGTGCGCTCCATCGCGCAGCAGACCTGGGCCGACGCCGGCCCCGAGGTCGCCGACCCGG
AGGTGGCCCGCCTCTGCGCCGAGGCGCAGCAGCACGTCCTCGCCGGCCGCTGGCTCGACA
TGGCCGCCCTCATGCTCGCCTCCGCCGACCTCCTCCTCCTCTCCCCCCGCGTCCCCGACA
AAGGTCAGCCCTTCCCCTCCCCCTCCCCCTCTCCCCCATTCCTCCGTCCGCTCCTCGCTT
GGATCGCGCCTTTGCTGACCCCGCGTCGCCGCAGAGCTCGAGTGCATCCTCACCGTCATC
TGCAACCTCGTCACCAAGGCCGGATCCGAGGACGAGTCGCTGGAGATCGCCAGGCTCATC
TGCGCCAAGCTCACCCACCAGCCCGCCGACAAGACCACGCTGCGCATCAAAGTGTAAGCA
CCGCCAGCACCAGCGACCTCTCTGCATCGGATTGTTATGTAAGGTTCCTGACGATGCCAA
TGGGTGGACGTCGTGCGCAGCCTCTTCAGCCTGTACAACCTGCTGGCGAGCCCCTCCGGC
AAGGCCTTTGTCTACAGGAAGGCGCTCGAGCTCGCCGCAGCCGGGAAGGCCGCCGACTGC
GTCGTCCCCACCTTCAAGAACATCGACGCCTTCGTCGCCTACTGGGGCATCGGCAAGCCG
GAGCAGAGGGACCTGTTCCTCGCCGTCTCCAGGGTTCTCAAGGACCAGAAGGGGTAACCA
TCGCAGCCGCTCTTTGCTTCCTAGTTTCTTGCATTTTTTTTTTACCCCAGTGTGTAAGTG
GCATGTGAAGATTGTATACTGATGCGGTCCATTCTTGTTATTATGATATGATTGTCAGCA
TGGCCAAGGAGTACTTCAAGTTTCTGAACAAGTACCTGGCCATGTTCGATGGATCGGCTG
ATGAGGCCGACGCAATCGGTGCCGCAAAGGAAGAAGCTGCTGCAGCAATCATTGAGTTTG
TCAAGTCATCTGATCTCTATCAGGTATTTTTATCCCTTGGTTCACATCTCCGCCTTAGGT
CTTGTGTTTGGGCGAAAAAAAAATCTAGTGGGAGACGTAATGCATGCTTATGAGTTTGAC
ATGATATAACATGCCATTCTACAATCATATCACCAAACGTGAATTTGGTGATAACCATCC
ACCATTGGCCCCAAAAAGTGCAGCTGCAAAATGTCACCAAATGTGAATTACATAATGGAC
TAAAGCTATCTGCTCGCACTAGCATGTGAATGTTAATCGTGTCAACCTTAAATATGTCTG
GTTACTACTGGACCGAGCCAACATTGTGACAAGATGCCCCTTACAAGCGTTCTTCTGTTG
GTTTGATGGATTATTGCTTCCACAAACTTGTGCCGCTATGCATTGCATTGCCCAATTCCT
CTGCCACTGCTTTATATGGCGTTGTGCCTTGTATGCCAACTGTAGGTTCTGAAATTCTTG
AGGGATTTATTTCGCAAGTTTTAACCTTGGCAAACTATACATGTGGTTTAATGCCAGTTA
AAAACCTAGCACCGGCTGCATTCCTTATATACTGTATTGATGAAAATATGCTTATTGCAG
TGTGACCTGCTCGAAATGCCAGCTGTTGCACAGCTCGAGAAAGATGAGAAGTATCAGCCA
GTTTACGAGCTACTGAAGATATTCCTTACTCAAAGGCTCGGATCCTATTTAGAGTTTCAG
ACTGCTAACTCTGCCTTGCTGCAAGGATATGGTATGTTCTGGTGAACCAATGTTAGCAAT
ACTCGCTTCAACTTTTGGATATCTAATGGTGGACCATTTACAGGACTGGTTCATGAGGAG
TGCATTACCAAAATGCGTCTTTTGTCCCTACTTGATCTGAGCGGCCATTGTTCTGGGGAA
ATTCCTTACTCTGCAATTACAAAAGCCCTTGAGGTAATCGGCTTACCTTGCCTTCCTATT
GTTGTTCACTTGATTTTATGTTATATTGACTTCTTACTTCTTCGTTAGATTAATGATGAT
GAGGTGGAATATTGGATTGTGAAAGCAATTTCATCCAAGATTTTGGACTGCAAAGTTGAC
CAGCTTAATCAATTGGTCATTGTCAGGTGTTCATGTCCACAAGACTTTCTTGCTCCATAT
CACAGTGTTATGCTTTCCCTTTTTGGTTAATACTTGGTCTGGTATGTAATTTCAGCCGGC
ATACTGCGAGGGTCTTTGGGATGCCAAAATGGCAGAGTCTACGTTCAAAGCTTGGAGTGT
GGAGGGTAAGCCTCTCACAGTTACCCCTCGTCTCAAATTTACAGTAGATAATTTTCTGCT
ATAAACTAGTTCAAACATGCATAGCTTTTCAATTTCTTGATGAGTGTCAGATGTTACTCT
ACAGTGACCTTGAGAACTTTCAGGTGCTTACCGAGCAACTAATCCAGTTTCCTCTTAACA
TTCTGCTACAGGGAAACATCGCAAATGCTATCAACACGATCCAAGCTAACAAGGTGACTG
AAGATGGCGGGCAGGGGATGCAAGGGTTGATGATCCGCTGATCGGAGGGGAGTCCCCAAA
CCGAGACTATAGTCTGTGAGATTAGATGAGCAATCTTTTTGTATTAGACATCTTGTAATC
CGAAATACTTCTACCACATGATCATGCTGGCTTTATCCTGGTTTGCAGTGTCGTGCTAAG
CAATCTCATGTTGCATGAATTTTGTAGTCAAAAGCCATACTGGATGATCATGTCAGCCGT
TTACAAACATTCCTGATTGTTCATACTGGATGCCTGTTTATCATGATAATTGTTTATTCT
CAAAGGTCTGGCTTTGGAATTATTGAGAATTTGTATCATGTTTTTTTTTATCAACAGCTG
GTGTTTTATATGGATGCTCCGGTTTAGAACCTGGTTCTTTTCTCCTTCTGTTCTGCAATT
TTTCTTGCGTTCCAAGCAAGCTGTGTTCTGAGTTGGTTCATCCGGTACAAGTGCACTCTC
AAATAGCTTGCAGCAGAGTATAACAAACTACTCCCTCCGTCCCAAAATNNNNNNNNNNNN
NNNNNNNNNNNNCTAGTACAAAATTGTACTAAGCTTGAAACAGTTATTTTGGGACGGAGG
GAGTATTTGAGTCTCTCAATGAGGACTCCTTTGCCAAGAAATTACATAAGATTTTTTTCG
ATGGTTTGAATTCTTATGATTTTTCTTTTACACACATCCCCAGTATTGAAACCCTTGGAT
ATTTACATTTTGTGAAGATTGCTCTTGACTCATTTTTAGAGGAAACTTCCATCCTACATA
TTCTCTGTGTCCATCAAACACTCTTTTGATCTGAATTCCTAGTACTTGTACAAATATTAA
TAGGGCATTCAACTTCTATTTCTTGTATTCCTGTCATCTTGAGAATCCAGTCAATCCAAG
AGCACCTTTAAACCTTTGTAGTATTGAACACCTACCAAGGCCATGTGCAACAACTGAAAG
ATATTCAAACCTTGCATATATTTTTCACCTTTTGGCATTTCCAACTCAACAAATGAATAC
AGATCGCGACAACATTTACATTTACATGGCAAAGATGTTGAGTTGCCCCACTAGTTCTCT
CCATCCTACAAAATATTTCCCAAAAGTCGGACTGCGAAAACTACCATGTAGCAACGTCTT
GCCAAGAGCTGCTGCTTCTTCTCAAAGGTAAGTCAGCCTGGAATGCCTCTGCACCTGTTA
AGCCCAATCTTCAAGGCTCAACCGCTATGTAAATGCCTGAAACAAAGCACCAGTAATTAG
GTTCAGAAAAAGTTTGAAGAGATTTAAGCATAAATGCTTGCAGCAACTAAGATGCAAACT
TATTCAGAGGCTAGGAAAAAAAAGAACTTATTCAGAGGCGAGTGATGTGTGCAAACAAAT
GCATGCATAGTCCGGTTCTTAGGAAGTTCGCCTTTTTCTTTTCTTTCAATAATCAACTAA
ATTTAATTTGTGTCATTTGACTAGTGCTTGGTAGCTATTTTAACATCATTATCTAACTTA
ATGGATATACTGCAAATTATCAGAAGTTTGCAAAAAGCAGAAATTGTGAAGTTGACCCAA
TCTAGCGTTGCGTGATGTAGAAATAGTTCCAGGAAAATGATTAATTGCACAGTGACAGAA
AGCCAGCTGCACACACCATTGTCCCTGTCAACGAAGGACACCCGGTAGATGAAAAATTCA
AAGGGGTCACAATCAGAAGCCAACTAATCTAACATACTGAGCCGTACCATTGCACATCTT
CCAGCGATTTTCCGGAGAAAAATTCACCGGAATAAAGAGACAGGACAAACAGAACCGAAT
GACGCCCGTGTATGCTCGCTAGCGCCAAGTTGAAGGACGCAAAAGCACAATTAAACGAGG
AACAACCAGGCATCGCAATCGATCCAGACGCACCGAGGGAAAGCAGAGTTTGCGAGATGG
GATCAAAAGGTAAACCGACCTGTCAAACGAGTTAGTGCTTTGCTGATGAACGGAGCTGCT
CTGATGACGCTATTTTAGAGGGATGATAACATCCAGGTTCGCCGCGGACCGCCACCCTTT
GGGATATACCGGGCTCTCAGATCCAAATGGCACATGCCAGTTCATTATTTGGGAGCAGTC
TGCAGGTATGCCCTCCATCTGGCTCTCATCCTCCACTAACTGCTCCACAAACGTGGTTCC
CTGCAAAGTAACAAGAAGAATCTCAGCTGTTAATACTCCACGCAGAAAAGCATTAGCCAG
TAAGTCCCAAACAAAGCTGGTAAAACTGATCTCCCATTTGTTTGATCACCATGTTGCTAG
ATGGCTACACACAACTGCTTCTTTTTTCTTTTGTTCTTATTTTGCTCCATTGTCGCCCTT
TTGTTCTCATTTGAATTTCCCCGTATGCGGTGTCGGTATAGCGGTTGGCACAGGACAAAA
TGCCAATCGATTAAAATGTACACGCACACAAGATACAAGCCACTAGAGTAATTGACTTGA
ACATAACATGTGAAGCTCTCATGAGATTTGGAGAGGAGCAGGGAGCTTACTTGGAAGCCC
TGTTCCACCATTTCCGGGTGCCGGATCGAGTTCCAGGCCTTATGGGACCTCAGCCTGGGA
TCCCAGAGCATGGTGCTGTTGAACGCGAAGCCCGACATGGCGACATGAAATCTCTGGAGC
TTGTTGGCATCCCCACTCGTGTGCCACCCCACAACCTGGTTCTGCTTGCACACGGGGCCT
TCGAGCACCACGCCGTGACCACCGTCGGAGATCGTCGGAACGGGCCATGTGCCGAACCTC
CTAAATCAATGAAAGGCAGCAGCAAGTCAACAATAAGCTGGAGCTTTACACATCATCCAT
CCAATTTTATTATCCAGTGATATGATGCCTGAGCATAAGGTTTCAGATTCATTTGCTTGC
CAGCCTAGCAGATACTAACTGCTGTTCCAGGCAAGGAATGTGCTGCTGGTATTAAAGCAT
CAATGGCAACCTAGAACTAGAAGGCAAATCATGTACACTACCGAAATCTTGAAAGAAGAA
TTTTCAATGTCTAGATGCCAAATTTTGCTTTGCCATCATAGAAAGCAAGCTCGGATCTTG
AGGCGGCTTTGTTTACTGCTCTTGAGTAATAATAATTCAGCAAAGATTGCACATTTGTTA
GGTGAATCTGGAGGCGGGACAGGGGAAATGGGCGGGCACCTGATCTGGCGGAGGCGGTCG
AAGAGCGGCAGGGAGTAGACGCCCTCCTCGTCGGCGAAGTAGACGACGCCGTCGAGACGG
TGGTTCTCGACGACCTCGAGGCCGGCGTTGAGCTGGTGCGGGCGGAAGTCGACGGCGGGA
GAGGCGGAGGCGTTGAGGGCGTCGCAGCAGCCGACGTAGCGGTGCATGACGGCGGTGCGG
CGCAGCGCGAGGGCGGCCTCCGGGGTGGGCTTGCCGGCCTCGACGACGACCCAGAGCACG
GGCGGGCGGACGAGGCGCAGCGTCTGGCCCATCCGGCTCAGGTAGTAGGCCTGCGACGCC
CGCGCGCGCGTGGGCGTGACGACGATGAGCAGCTTGCCTTGGCCGCTGTGCTCCTCGGCG
TTGCTGCCGGCGGCATCGGGTAGGCGCTGCTGGGTGATGGGTTGCCCCTGCTCCTGCTGC
TGCTGTTGCTGTAGATGGTTGAGGTGGGAGGAGGAGGGGTGGGCGGGGAGGTGGGGGTGG
AGCGGGAGGTGGGAGAGGAAGTGGAGCAGGCCGATGAAGGAGCCGAGGAGGAAGAAGGCG
GCGAAGCGCGGGAGCGGGCGGCGGGTGAAGAAGAGGAACGGGTGCGGGTAGCCCGACTTC
CTCGGCGAGGAGGAGGAGGGGGGGGGGGGGGGGTGGCGGGGCGGCGCGGGGGGGGG