morexGenes - Barley RNA-seq Database

Contig contig_136678
Source Contig contig_136678
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136678 (7884 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_136678

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5770	1	688 bp	MLOC_5770.1	Available	Available	None
MLOC_5772	3	1665 bp	MLOC_5772.2	Available	Available	LOC_Os04g42930.1, FRAME:-2, EVALUE:7e-55, 13104.m04249 protein OsGrx_C2.2 - glutaredoxin subgroup I, expressed
MLOC_5771	1	346 bp	None	Available	Available	None
CDS Structure of MLOC_5770

CDS Structure of MLOC_5772

CDS Structure of MLOC_5771

Contig Sequence (7884 bp)

>contig_136678 7884 assembly3_WGSMorex_rbca.fasta
ATCGCTTGCCGATTTTCTTTACGTGGGAGGTGGGATCGCTGGAAGAGGTCGAACCATCGC
TAGGTTGAACCATCACGACGTTNNATCCTGCTTTAATAGTAGAGATCATGAATTGCACGA
TGGCGTGTTGGCTCGTAGGGCTGGTTAATGTTCGCGATGCGAGGGTTTCCTGTCGACTCT
CTTAAGGTGTGAAATAGTTGTTGTGCTGATTTTGTGAACCTTTTGGAAATTTTCAATCGG
GTTTTGTCGAATGCAGGAAACTCCGTGAATTGGTTTTCATTTTTTATTTACTAGGTTTTG
CGTTTAATTTTAATTAATGATTTTAGTTTTGCTTTTTATTTCTAAATTTCTTATCATTTT
GTTTTTTTAATTGGAAATGCTACCTTTTAGCCGATAGATCATGCTCTTGCGTCGGCCAAG
TGTGGAGTTGTTAGATCACTTTTGATCGAGTAGACCACGTGTAAGAATAGAGGGACCGGG
AAACTTGTAGGTAGCCTTATCTTTTCTCTCACTTAGTCGTCGCCCAATAGATCACTCTCC
CTCATCCTTTTCAGATAATGCTTTGTGGTGGTGGTATCGCCATCAGCGTCCGAGATTCTG
ACTCCGACGGGCTCTTTCTTTTTGGTAGAGAAGTCGTTCCTGGTGTTGGATACGGGCTTG
GAGATGTGGCACCCGTCGTTTCCATCTCGTCATGGCCACGGCTCCAACAAGAAGAGGTTG
GGGAACGAGTGTGAGAGGTGGCAATCGACGAATTTGGCCGAAGGGCTCGAGAGAACAGAG
CAAGGCTATCTCGAAAGCGAGTTGTGTGCCGTCAATTTGCCCCTGAAATTGGCTGGCGGA
GCAGCTAGAGCAAAAGATGTTTTCTTTTCTTCAACAAGGGCCCAACTGTAATTGCAACAA
GGCTCTTGTTGCAACATCGACGAGCACCATGTATGTTTTTTTCGAAACAAAGATCTTGTT
GTAAAACAACCTGTAACAAAGATCTTGTTGCCAAAAAAATCTACAATAAGGACCTCGTTG
CAAAAAAAAAATCTACAACATGATGTATGTTGCAAATGTTTGTGCAACATGATCATTGTT
TCAAAAAAAATGCAACATTAACTTTGTTGCAGTGGGGAGGACGACGTTGGGTCACTCGAT
GGTGTGAGACCTGGCGACTAGTGACCGAGTGGATCTTCTAAAAAGACCAGCCGGCGACCC
GGTGCACGTCCCTTTTCTAATTCAATAGTTCAACAAATGTTAACCGATTTTTTTAAAAAC
ATGTGTTTTCAAGAAATTTTTTTAAAAAATCATGTTTTCCTATAATGGTCACAGCGATCC
ACGAGCACCTACGGATATGTTTGTGTTTTCGATCAATGCTAGATCAGCGAATTTTGAAGG
AACCATGTTCTCGCAAGAAATCCAGAAGCTTGAATTTCGAGACTGTCGACCAGCTAGAAG
TTCTACACCCCTTGAAATTTGAAAAGGGTCATCATACATTCGGCTCGTAAATCCGCCGGA
AACACCCCTTGGCATTCCTATCCTGATTACTTATTTAATTTTAAATCATGCCTATCCTGT
TAAAACACTACTTCCTAACTAATACGTACAGGGGAGGGTGCTTTCCATTCAAATCTAAAA
AACCTGGCGACGAGATTTCTTTTCGCTAACAAGACGAGATTCACCCCGCGTCCAGACGTG
TTTCGCTTCGGACTCCGTTCCGTTCCACGACTCCACCGTCCGGCTCGACCTCCACGTCTA
CTTGACCCGTTGGGGTGGTCGGCCTCGGGGACCTGAACCGCGCGCTTCGCGTTGACATAA
TACAACGATCTTGCGTGCACCCTTGGATGATCGACCGATCCATCCATCGCGCGGAACGCA
GCTACGAGCAGTAGCAGCGTGCGTGCGGCACACAAGCATGCACTGGCCCGCCCTTAAACC
CTCGCCGGCCAGGAAGAAGCCCGCGCCGGAGCCCATGGCGTCCTCCGCCGTCCTCAGCGA
CCTGGAGGAGACTGACGACGGCTGGATCGTCCTGCCCCCGGCGCCGCCCAACTCCGGGCA
GGTCAACGCATCCGCCGACGGAGAAGCGTTCGACCCGGCCCCGGACGCCATCGTCGGCCG
GTACCTGCCCCTGCGCCGCGCGCTGCGGTGCGACGGCCTGCCCCGGCAGATCCACGACGC
CGACGTCTACGGCGCGCACCCCGGCTTCCTCGCCGCCGTGTACCCGCCGGCCAACGGCCG
GTCCGAGCGGTTCTTCTTCGTGTGCCGCGCGCAATGCCAGGGCGGGCGGCGCAGGGCCGG
CCCCGGCGCCTACCGCCTTGGTAGCGAGGCCAGGCTCCTCGGTGGCGCCGCCTACTGCCA
CGCCTTCCGCTACTACGAGGACGAGGCCGAGACCGGCTCGGCCTCCACGAGGGAGACCGA
GTGGCGCATGGACGAGTACGGCGAGTGCCGCTTCGCCGCCGCCGCCGCCGCCGCCTTCGA
CATGGTGGTGTGCAAGCTCTACCCGGCGCGCGGCGGGGCCGTCCACACGATGCTCGGCGT
CCATGACCCCGCCTCGCCATGGCACCGTCCAGACGTGCATAAGCCGCAGGTGCTCGTCCA
GCTCTACCTCGACAGCCTCAGCCTGGGGGCCCCGCGGCGGTGCAGAATGTACGCCGCGGC
CGACGTCTTCGCCGCGCACCCGGCGGCGCTCACGGTGGCGTTCCCGGCGGCCAACGACCG
GTGCGAGTGGTTCTTCGCCGTGCACCGGCAGCACAAGCTCAAGGAGGACGGCGAGGACAA
AGCGCGCCCGCGGAGGGCCGGGCCAGGGACGTACGTGCTGGTGCGCGAAGGCAGCGTCGT
GAACGGCAGGGGTGAGGACATAGGGTACCGCCGCGTGTTCTTGTACAGGGAAGACGACGC
GACGGCGAGGCGGGTGTCGCGGACGGAGTGGTGGATGGAGGAGTACGGGTTCGGGAAGGA
CTTCCCGCACGGCGAGCTGCCACCGGCGAAGACGCCAACGGCCGAGGACGAAGAGGATGA
GCTGGTGGTGTACAAGCTGTACCTGAAAATGGCTGGTCACCGGCGGTAGAAAACGCTTCC
TTCCCAGAATGAAATAGGTCTGCAGATTCTGTCAAATACACGACATAGACTGAAACTGAA
CTCAGCCTTAAGCGTCCAGGGTGACATGTATATATATCCAAAAGAACGACAGTCATTTGG
GGTTTGATGATATCACCGAGATAGTTTGCTTTATTTCTAACAGAGTTTTACACAGAGATT
TAACATTCACTGCGGACATACTAGACAGCAACAAGCCCTGAACTTGCCAAACATCAACCT
TGGTTATTTCATGACACGGGGACGATGTAAATCATGCAACACACTAATAACATCGACCAC
GACAACTCGCAAACAGAGCTAAGCAGCGGTGGTGGCCTTCGAAGTAGAACCGGAGATCGC
TCCAGCCTCCGTCAGCAGAGCAACCAGCTTCCCTCCCTTGTTCAGTGCAAGAGTGTCTGC
CACAGAAGGCATTCACATGTAAGTAACTGTCAGAAAGTAATCCAGTGGCAGTGCAAGAGT
GTCTGCCACAGAAGGCATTCACATGTAAGTAACTGTCAGAAAGTAATCCAGTGGCAAGAA
AGCAAGCTTTGCGCAATGGAATTTGCTGCTTGTTCATAGAACAATAATTACAATCATCAG
TTTAGCAAGGTTGTAGGGAGCAAAGCAGCTCACCATCACAGCCACCGATGTGTTTTCCAT
TGATGAAGACATTGGGGACAGTCCTCTGCCCAGTCCATTCTGCAAGAGCTGACTGCATCT
CAGGTCCATCACCTTCATAAAACATAACAAGGGTTAGTTCAATAAGGGTTTCTCCCAAGA
CCTGTGCCGATCATCCCAATGTAGAGCCAATACATGATTCAGTTAGAACTTAGAACATGC
TTGATGAGTAGTAGTGTAGTACGACTGGGAGGACAGTCAAAACATGTTTTGCTCACAGCA
TGTAAACACTAAAAAGAAGAGCAACTAATCTGAGGTTCTGATGATAGCACTTAGATTACA
TGGTGATTCATAGTTGGGTCCTTGGGACCTCAATTGCGTTAAGAGAAAACTCAATAGCTT
CTTAACTGTCTAACCAATCATCAAAGCTCCCAAGAGATTTGAGATCGCACTCACATCATT
ACTTGGTGAGCTTACTGATTACACAAAATCATTGTTCCAGAAATGGTGATGGCATATTAA
AAAATATTCTAGGCCACAGCAGTATGAAGCTCTTAAACCCAATATGTATAGCATTTCAAC
AAAACAGTACACATGGAAATCAGGAAAATAACCTGCATTAAGCTCTTATAAACCCAACAA
GTACACTATTTCAATGGAACAGTACCGGATGCAGGAAACTTAATGTTATTATTAATCTAT
AAATTATTGGGAGCTCGAAAGCTTGTAGCCATGAAACTTAGGTGCATACAGTCTACTTAA
GTGAAATTTAAATAACCAAGAGACAGGATAATTCTACTTACTCTCAGTGTCCAACTCAAT
GGCCTTGAAACTCGCTCCTAGCTGCGTGAACAGTTTCTTCACTTGTACGCAGAAAGGGCA
GTAAGACTTGCTGCAGAGCCGAAGAATCAGATTAGTAGGAGTTCGCGTCAACAGGGCATA
TAGCATTGGACATCAAACATGTCGTTGCCAATATAGTACAGTAGGAGGGTTAATAGCAAC
CCCAACGGGGCGACCTATTTCATTTGCGGCCGTCTGTTTGGGTCCGCGCGAACAAAAGTG
ATGACCCAACGCGCGGACCCATTTTCAGAACGCGTCCCCTTTGCATCCGCGCCGACTCAT
TTCTGATTTAAATTTGAAACTGACGTCGGCGCGGACACGAGCGGACGCACGCGCGCCCTC
TCTGTGTCCGCATGTGGGCGGCATGGCCTACTTGTCACACAGCCACCCACCCACTTCTGC
CTGATTATTTAATTCGTTGACTCACTTCCACCCACATCTCTCCTATTATTATAATAGTAC
AATGCTGCTGCCCATTTGCTTCCCGTTGGACGCATGTGCCGACCAATTTTAAAAAACGGA
CACGGACAGTTCGACGGACGACCCAAACGGACGAAAAACGGACAAAGCGCGGGTCCATTT
GGATCACCCCGTTAGAGTTGCCCTAAGCCCATCATCATCGGAACAGGTACAAAGAGCGGT
TGGACCAAACATTTAAGACGCAATATAATAAACCTAGATACTCCCTCTGGTCCAAATTAA
TTGTCGCTGCAATATAGAGCTGCAACAACTAATATAGGTCGGGTGAAGTGGTAGATCCAG
AAAAAAAAAATATCCCCGTAATCTCCTAACAATTTTTAAATCTCTTGCAGCAGGATACTA
CTACTACGCTCCAGAGTTAAAACAAGCCAATAGGATTTAGGTACAGATTCAAAACTTCTT
CTACTTGTTACTGAAAATTTAAGTCAGTTTTCTCTCTCTACCGGGAATGAATTAAAAAAG
AACAGGGGAATAAAGAAACAGCAGCGAATATGCTCTGCTCATGGGGATGGGGGAAAGAAG
ACGAGTATAGGATAAGATGCGGAAACAGCGTAGGATCTGTTCTCCATCACCCGCATCCTC
TTCCCAGTTCTTATTACGGGCTAAATTTCCAGGTCGAGTTCAGTAGCGCTGGTTCACGGC
AGGAGCGATCCGTGAGAGAGACAGATGGGAGAGAAGAGGGGTGAGAGACGGGCGCACCTG
AAGACGACGACGGGAGCGGAGGCGACGATCTCCTTGGCCTTGGCGAGCGCCATAGCTCTG
GACTCTGGGGTGGAAGAGGAGGAGGAGGAAAAGGCGGTACCCATCTCCACCACGAGCGCC
TCGTATTTATACAGCCGGAGGGAAAGGGCAGGGGAGCGGCGGGCGGTGAGGGCGCTGTGC
TGGTGGGCGCGGGGAGGGCGTGATCAATGAGCGAGGGGAGCGCGTACACCCGACGACCGC
GCTGTACGCTTGGCGCACGTCTCACGTGTGGAGAACTCTCTCTTCTCTTCCGTTTCTGTA
GCTGGCCCTGGCCAGGGAGGCGGCTAAATACACGGTCAACTGGGCGAGGACAGATTTTAC
ACGGAAGGGCCCATGGTGGGAATGGGATCGAACAAAAATTCGCCTTACCGGAGACGTGAC
GGCGACCACTGCGGATCCCCCTGCCTTCAGGCCATGGACCGACGACGCACGATGAGCCTC
CGTGGTTAGTCATACCGCTTTGCTAGTCACATGTTTTGGAATTTTGAACGGTCTTACAGC
CTCCAAAGTTCTTTATTACTTGGCAGATACAAAAAATTCCAAATCAAAGAGCACATAAAG
GTTCTACTTTTCACAACACACCGCTTAGCGGTGACAAAAGGGAGCATGGACGGAAGGCTG
ATTCTATATATTGAAGTCTGGTCAAAGTCCGGATTCACTGCTTATGGACAATTATTTACC
CAAACAGACGCCGAAGGGAGAATCACATATAGCAGACAGATTATTAACACGATCGAATGT
TAGGCCTTACAAAAACTGCTTCCAGACACAGACGCAACTGGATCAGATACTCCATCTCAT
CGTATCAATCAAAATGCGTGCCCAATGCACCAGGTCAACCACATTCCCATAGGCTTCTTC
CAGCTAGAAATAACATATGCACATGGGTGAAAATTACAACGATGATGGTATCTGGATCTT
TTCCCGCAGCTGCTGAGCGACAGCATCAATGAATTCCTCGGTGCTCAGGTAATGCTCCCT
TGTTACCCTAGCCACGTCAATAGGGGGGAACACAATGTCATGTTAATATGTGAACAACAG
GAAGAAAGAAAGAAAACAGCAAAAAGCGGAAGCAAGAAACATTGGCAGCAAGACATTTGA
AACACTGCCGCAAATAAATGTGATTCTTCCAAATAAAATAAAAATGAATGTGATACTTGC
ATTTCAAGACAGGGAAATCACATACTCCCTCTATTCCATAAAGTAGTGTATAGATTTTTC
TGAAAAGTCAAACTCTGTAAACTTGGACCAAGTTTATAGAGAAAACTAGCATATTCCATA
TCTACAATACCAACTACTCCCTCCGTTCCTAAANNNNNNNNNNNNNNNNNNNNNNACTAG
TGGACTACATATGGATGTATATAGACATACTTTAAAGTGTACATTCAATCATTTTGCTCC
GTATGTAGACACATACTGGAATCGCTTAAAAGACTTATATTTAGGAACGGAGGAAGTATA
TAACTACGTCTTATGATGAATCTAATGATATATGTTTGGCATGCTAGATGTAAATGTATT
TCTCCAGAAAGTTGCTCAAAATTTATGAGGTTTGACTTTAAAAAAAAATACTACCTCCGT
CCGGAAATACTTGTCCTAGAGATGAATGTATCTAGGCTTATTTTAATTATAGATACATCC
ATTATATGCATTTTTAGGACAATTATTTTTGGACGGAGGGAGTATGCACTAAATTATGGA
ACAGAGGGAGTATTTTTTTTAACTGATTGGCATGCCACACAGCTCAGAAATACAAGGATG
TGGTATACTCCCTAGTTCATTTTCTATGAGTAAATCTTCAAACCGCAATTTTAACTATCA
AAGAACAACGAGTTTAAGTAAAGTGTCATAAAACTAAACTTCTTGTGTCATGGTTTTAGA
TAACCACATTTTTGGAATTCAATGGAATCAACAGGTGTAGCTAGGCTTACCCATCAGCGA
TACAATTACAACCGCGAACAACCGTTATGAAGTTCCACTAGTTACCGTTCAATGCCGCAT
GAGTGGGTTGTGCTATCGATTCCACCACAATGTAAATACTCCCTCCGTCCCAAAANNNNN
NNNNNNNNNTTGTCTAGATATGAATGTATTTAGTCACGTTTTAGTATTTAGATACATCCA
TTCCTAGACAAACCTAAGACAAGA