Map Locations of contig_136669 (7847 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_136669

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5765 3 1018 bp MLOC_5765.2 Available Available LOC_Os05g38040.4, FRAME:-2, EVALUE:2e-56, 13105.m03976 protein expressed protein





CDS Structure of MLOC_5765






Contig Sequence (7847 bp)

>contig_136669 7847 assembly3_WGSMorex_rbca.fasta
ACGAAGTTATTACGCCCTCTCTCGTTGCTGGTATCTCCANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTATGCTACGTTACCCAACAGATATGACATACACTCGGAAGATA
GGATTATAATCCTTTTGTACAAGGTTAGTGAAGTCACAAGTGCCAAGTTGATGCTGTTGA
TGTTGTTTTGGTGATGTGTGTAGCATCAACGAAAGAATATCATCTTTAGGGTCGAAGTCA
CAAGAGCCAAGACCATGATATGTCTCACTCTGTTTTTCTTCGACATCTCGTGGGGTGAGA
CAAAGAGACCAATTTTCTTGTTCAATATGGTGGTAGGCACACTTGTTGCGATTCCAGATG
ATGCTAAGCGGCTAGACATATTCATAGGGCTGTTCCCCATCTTATTTCGAATAGAGTTGT
TTCGCTTGTTTAATATGCGGATGATATTATCCTCTTGGTCGACCGCTCGGCTATGGCTCA
AGTTTTCATTGATGTGTTTCCAAGGAATGTTTGGTCTCACTATTAATTTCAATAAAATTG
AGGTTATGACCATGGGGTTCTCAAAGAAGGTTAATCATAGTATTTCTAATCGTCTCAACT
ATATCTTGGGATCTTTCCTCTACTTATCTTGGGAATCTCATTAGTGACTCACGTGTCCTG
GTTTGAGATCTTTGTCTGATTGTGACTAAGATTCATTACAGATGCAAGCCTTGACATGGT
CCCCTGCTCTGTAAGGCGGCAAGGACGGTGCTTATTAACTCGTCCTTGCCAAGTCTTCCC
GTGTTTACAATGGTATTTTATCTTCTTCATTAGAGTATTCTTAGTGAAATTGCTAAGTAC
AAGTACCAGTTCTTTTTGCAAGAGGGTAAGCAAAAGATACGATATGGTTAAATCGGCAAA
GATTTGTGACCCGAGGACCAGGAAGATCTTGGGGTCCATTTTGACCAAACACATGAACCT
GGGACGTTGTAGCTTGGGACGCCCTGCTCGTACAATTGATTGTTGTTACAACTTCTGCAC
AACAGGAATTGATCTCCTGGCGTCTTGAGTCCTCGGGCATTTTCTTCACTAAGCCCCTAT
ACCGGGCCATTGTGGTTGTGCTCGGTCCCTAAGAACTTAGAGAGATTTGGCAAATTAGGC
TATCATTGAAGATTAAAATATTCCTCTGACATCTTGTGTGTGTGTGGCCGTTTGCCCTTC
GGGAAGAGAGATCCTCAAATGGCAATGGATCCGGTGATGGCCGATGCCCGTTATATGATG
TTAATGAGGGTAGTAATCATATTTTCCCCCTTGCGTTACTGTGCAGTTTCTTTGGAGCTG
CTTTCCTGAAGTTGTGGGATGCAAGGGTTTTCCCACTAACTTCCCAGATTTCTTCGGGAT
CTTGCAGACTAGTTCAGACAACCTTCACTGACTCCAATGGCTTGCTTGGACAATGTGGAT
CATTCACAATAAGTTGATTATTGAACATTCTCTCTTGTGATGCCCTACTTATGTCATATA
TAAACTGTGTGATTTCTTGCAGCAATGCTGGCAAGGAGTAGGGTAAAGTCGCCATCGTGA
TCATTTGGGGACTGCGTTCCTTGGCTCAGCGTTTGGCCTCTCCTCCGCCGGTCCCTTGAT
TTCGTTGTATCCATTGTGCTTATATGTTAAGCTGGTGTCCCCAGAATTTAACCTCTTTTT
CCCCCTTGTTTCGAACTTGCATGACTGTATGGATGCTTTGAGTTGTTTGCTTCATCTATA
AAGTGGGGCATATGCCTGTTCCGGTATATTTCACTCTGTCCAGTTTATTCAGAACTATCT
CTATTCTCTGTATTTAAATTTCGTGAACCAGGTCAATGATCGTGAACGAAAGAAGCCGAC
GATGGTGATGCCGGATAAGCCTACTGGAATCAGCAAGGAAGCTCGCTATAGTCCGAATGT
TGTCTGGGGAATGTCGACGCCGACTTTTGTGACAGGAACCTGTGATGATATAGCAGTGCA
AGCAGGCTTTGTAATCAGGAAAGGAAGGAGGATGGTAAAAGCTTAAGAAATGCACCAGGG
TAATAGCAACCATTGTCACAAGTTCATATCATGATTCACTCAGGAAGCAAATGCTAGACT
GAAACAGATGTGCAAATCCAAATATTCCTAAAACACACCATGGGCAAGGATACATAAAGC
ATGCAGCAAGCGATCCAGTCCGTTGCAGTTGCAAAAGAGCAGCAACGTTTCGTAGGACCT
GCTTTTGCTGCTGCCCTGCCAGTCCCATTACACTTCAGCACTCAAATCAGGTAACATAGG
GCAAACAAAAGGGAAATACATATATATGTCTACATCTGTCCAGGTGACTGATGCATCTAA
ATACTGCCATCACCGACAGAACAGATGTAGCCCCACTATGACTTCTTCTTTTTATGCCTG
ATGACTCATGTCAACTCTACAGCCTACCAGCTCGACCTGCTCCTTTTTATTCCTGAGAAA
AACAACCAAATTAACTTAATTAGAGGTCAATAAAGCATGAGGCCCATGATGATGCATTAA
AAGTAGCACAGCTTTCAGGTGGACGATCATAGCAAGCTACGTGCAGGTGGACAAGAACCT
ACTTAGGAATTTAACAATTGCCAACACTATGCATTTAAGTTTAAAGAGTTCAATGATTTT
CAGTTCCTGTTTTCTGGCAATGGAAACCGGAAAAACTATGTTGGGTGAGACCTATGTAAA
TAAACGATCAAATAGTAGACTAATAGAAGCCTATATGAATGGCTCAGCGATTAACCAAAT
CATAGAATGGCAACTGACGATGGGGATTTAGAAATGCACTGGAGTATTAACTGTCAGCTC
TCAACAAACAGTAAGTTCATGTCACGATAAACATGAGTGAAATGCCACACCATCAAACAT
TGCAAGATTCTCAGAAGATTAACACAAAAATGCATGATATTTTGAATACAGGATAACACT
CATGATGGGATAATAGGTCACAGTACTACACTGATATCACACTTCACAAGCCTGAAAAAT
TTACTGATTAGCTGAACTTTCAATTCTTGACAGTTCATTATTTTTTCTTTGGGAGCTATC
AATGTCAACCACTACTACTCTTCCCTCACTGTGCACAGATGTGACAACCAATAAGTAAAT
TTTGTGCAGATTTCAGGACCTAATTATAGACACCAAAACCGAGACAACGACACTAAGAAA
AACAATAATATCCATCAATCTTCTTACGTGCGCGTACTAGGAAGCGAGAGGAGATCAATA
GTTGGTTGGAGCTTATGACTAAGGGCAGTCCACATATAGATCACAAAACTGAATGAGCCC
TAGTTGATTGCAGCCTCACAAGTTAACATATCTAATGTTATATAATATATAGTTCATGTT
CCTTTACAAAAGACTAAGCAATCAGCCCTCTGTTACAACTATTTGCAAACAAAATGCAGA
GCAGCTCACAAGACTAAGCAATCAGCCCTCTGTTACAACTATTTGGAAACAAATGCAGAG
CATCCTTGTGAGCTGTTCTCCCAGAGAAAAACAGTTTTAACTAACCCGCCGGCAAGACAT
GGATGGTTAATTAACTACATTTTCAGACACTGCAGTTAACTTACCACTGCCCAAACTGGA
AAGGAAATGATGGAGACATAGCACACACAAAAAAGGATACAAAACTGAGACGAATCAAAC
AATGAAATAAGGGATTATAAATATAGAGCGGATTCTTGGACATACCTTGTTCACAATAGG
AGAGTCCACTGCAAAGTATTTAGTAGTACAGTGAACCTGGCAGAAATAATAGTCAGTACG
TATGTGTTTCATCTTTTCTTAGATAATATCCAAACGGGCAGCAAATGTCATACCTTGCCA
CCAATCACCTCTGGTAGCCAGGGAGCCATCCGTGTTATCCTCCTTATACTGGATTGGACA
TATAGGAAACATTCAAACATTAGTAATACAATCAACTAGGAGCTGGATTATTTGCAATGC
AATTTCAACGCACATTTCTCGATGATTCATTGGCCTGCTTGTGTGGAGAGCTGTCATAGA
AGTCCCGGCCGCCGTAATGCACAGACGAACCAAAATAAGGCGACTCTGAGGACTCGTTTG
GGTAAAATTGTTTTCCATCTTTGTAAGCAACACGACCTTTAGCAGGGCTTCCTTGGGATT
TGCCATCTGGAGGATGAATTAAAATAGTGATAGTCAATACACTTTTGTATCACATATCAA
TGACCCAAATTCCTATCCAAACTAAGGTGACTCATCAGCATTAGTAGAACAACTTATAAC
CAGGGGGAAAGGGAACAATTCTGGTTCAGAGATAAAATGTTCTTTGGTGTTGGTGTCTGC
CAATACGCTGTATAGCCAACCAGAAAACCAAGAGATAGTTTGCCGGCTAATGCTTCGGAA
TATTTTCTTTGTTATATATAGTGCTCAAATATTTAATAGTATATGGCCCAGCAATGCCGG
AATAGACAGGATATCCCAGAACTACCTGCAGTGCCCCCACCGCTCTGCCCTTTGGGGTTC
TGCTTGTTCAGCATCGTGTACAGGTCCATCTGCCTGGCGTCTCTTGGATTTGCCTTTCAG
ATAAACAAAAGCAGCAGCGTTACCACAGGCATACCCAGATGTGAATATGACAACAAAATA
CATATAGGATCACGAAAATTGCCCCAAAAATGATACACGTAATGAACCCAATAGGTAAAG
AACATCAGGCAGTCGCCACGGACATTCAAGGTATCAGAGTCGCCGAATCACATCGCCAAT
TGACAGCAGACAGATCGCAAAAAACGGCGTGAAGAGGAAGTACCGCAGGCGACGCGGAGA
AGACGGAGCTGAAGTATCCGTTCCCCGCCGCCGCCGATCCGGTGGAGGCAGGGGTGGGCG
GCGACTTCTTGGCCTCCATGCTTGTGGTGGTTTAGGCGAGGAACAAAAAGGGGGAGAAGG
ATAGGCCACGTGAAGTGGTCGTTATAGGCGGCGGCGCGGGTCGGAGGAGAGGGAGGAGCT
CGCACTTCTCTCTGGTTGCCTCGTGGCGCCCTGCTCCGGCCTCCATCTGTGCCCGCCGTT
TATAAAGGCTCCGGGGAGACTCCCGCTGTGCTATTTGGTAGGTCTCGACGGACTGCACGG
GAAGAGTGCCATTGTTTTCGTTGGCACCATTTTTTTTTAATCTTTTTATGCTTGAGATGT
TACGAAGGCAGCATTGGCAGGCTGCAGGCACTAGTAATCTCAATTCAACCTCGATCTTTC
TCTTTCAAAAAATAATAATACAACCTCGATCTTGATCTTATGGAACGTGCTACGCATCTA
TCGGCTGATATTTTTTAAAAAATAGTCGGGTCACGAGCCATCGAATTTGGCACATCGAGC
AAATCGAGCGCGTCTTCATCGCTGCAACACATGTTTTATTGCTGGATTATTCCAACAGGT
TTTTTGCAACAGATTTTTTGTTGTAATTTTTTTGTTGCAACTAAAGTTTTGTTGCAAGTT
CTTTTTTGCAACTCGTGTATTGTTATAGAAAATTTTCATAACAGAGATTTTATTGCAAAA
CATAGAATCATCATAAACCATTGCAAAAATGTATATGTTTCAGAAACATAATCGAACGCG
TTCTCCGAAGGACGATATTTGGAATTTGGACCCTCGGTTGAACACGTGTCATGCACGAAA
CGTGACAGACGTGGACGTTGCCATTTGAAGGGTGATGATAAGCTTTTCTCTAATCTTATA
TCTCCATCTTTTTGAATATTTAGGTTACTTACGACATATGTCATGTGGTCTTATAAGTAC
ATCTAGAACTTGATGGACGGTCTTTTCTTTAGTACCAATTGATGAGTGGTCACAAACCCA
AAATTATGTATTACATAATTCAAAGTTATGGGGTATTTTATTATATACTATACATTCTAA
TGTAAAAGATGAATCTTACATGTTCTAAATTCCAATCCATGGATTTTGAAGTTCCAGTAG
AAACAAAATTTGAAATTTCATATAAAAATAAGTAACTCAAATATTTGCATTATTTATTAA
TAATTATAAACTAAAACAAATTAACCTATAGTTTTGAATTTTAAACTATGAAAGATTTCA
ATTTCTAAAGTACCATAGTTCAAAATTTTGAAACATAAAACTACTATTGATATTTGGACT
GTAGGTTGTGTCATAATGCTTGACAACAAAAGATTAATTGCCCCGAGAACCTATAAGCAC
AACTTTATATGGGAAACACATCCCTTTAGGCTGGTCATAATGGGGAGTAACTTAGACTAG
TGGATGCATATGACACTAATTTAAGTTACTACCTGTATAATGCAAAGTAACTTAGTACTA
GTGTCATAGATGGATTTATTTATTATATTATAAACTCATCTGATCTCGGAAAGTCCTATA
TTACTAGAGCAACATATTATATTACTCTAAACACCTCTTTCCTCATTAACTACATGCCAC
ATAAGCAAATTTGTCTTGAAAAACATTGTCTTACTAGCTAAGTTACTCCCACTATGACCA
GCATTAGTTCAAACTTAGTTAATCCATCAAGATAAGTAATACCAATTAGGTTGCACCATC
ATCTTGGTTATCCACGGTTGTCCTCATGAAGGCCGGAGCAGGGCACCATGTGGTTTTCTA
ACTATGGATTTGTGACAGAATTTATAAGCATTCATATACTGTTTTCAGAAGTGGAGTCAC
CCAAGGGGTGACAAGTATCTTGAATCTCTAAGCTCCCTAGAAAGGGGGTTTCCTGTTCTC
CAAGATGTGGGTTGAATGTGGGCCCCACTTAGCATTGAATGAATTTTGTATTTATTGCCT
TGACCTACATCTTGATTACTTGTGTCATTTGTCTGAATGTTCTGGATCACATGTTATCAC
GAAAAAGGGTTTCCCCCCATTTTGTATTACAAAGCAACCAACCGATACAGTCAACGATAG
GTGTTGGAGCGGAAGCAACACAGTCACATCCAAAAGAAACGAAAGAGAAAAAACAAAAAA
ATAAAATGCCGGCAACGGTGGATCGACAGAAACGAAGAAGCTTAGCGACCACTGCGCCCA
CCGAAGATCTCCCACCAAGATCCAAGGCTCTGAAGCGCCGGTACCAATCAACACGTCCAA
GAAGGATCGCGACGATGACGACGCTGTTGTCAAGGCTTTCCCCCGGTACGCGACAAGGGG
AGAGGAAGGGTAGCCCCTGACGCCCTCGAGGAAGGTCGTGCAGCACCCACAGGCGCCACC
ACGTCGATGTCGGCCAGGCCAACAGGGGTTTCCCAACCTTCACCTCGGATGCTTCGGAGC
CGCCACCAAACCGACCACCATCCTGCGTTAAAGTGGTCTTGAAGCCTCCATGTCGTCTCA
CCACGGCACCACGAGGTGAGGTCTGCACAGTGATGAATTGTAGCCGGGACTAGGGCAGCA
ACACCGTCGGCATGCAGGAGGGTTCAACCTCCACCGTTAACGACGGTAGCCGACCGGACA
CAATAGCAGGAGCATACCAGCCTCGTGGGCCCACAGTAGCCTCCACGTCCGTAAAGCTCC
CGTTGTCACGCTGCAACAGGCATGCCATCGACTTCGCCGCCCCCTGTTCGAGCTGCTCCT
CCTCCTCATCACACAGACGACGACGAAGCCACGCCGGGGCCCGGCCCGCTAGGACCCAGA
TGGGCCCTGCAGGGCCTAGATTTGGGTCGGGGGCGCGCCGCCGGCTATCCGGCGTCACCA
CCCCGCCCCACCGCCAAGGGCCACGTCACCACCTCGCGCGTTGTCGGCCACCATCGCTAG
GTGACCGGGCCGCCGCCTAGCCGAGGAGCATCGCCGCCGCCCTATGCCCCGGGCAGGGAA
GCCGCGTGCGCGGGGATTGAAGGTCCCGCGCAATAACAGCGTATCCG