morexGenes - Barley RNA-seq Database

Contig contig_136592
Source Contig contig_136592
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136592 (7442 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_136592

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5710	1	1635 bp	MLOC_5710.1	Available	Available	LOC_Os05g39500.1, FRAME:+3, EVALUE:2e-77, 13105.m04164 protein DUF640 domain containing protein, putative, expressed
CDS Structure of MLOC_5710

Contig Sequence (7442 bp)

>contig_136592 7442 assembly3_WGSMorex_rbca.fasta
TACTCATTACTCCATATGATACCTTGTCTTTGTAGAANGGTTATACATATGCTCTTTTCT
GGATCCTACGTGCACATGTCTTTTGTCTTTTCATCTCTATATAGCATGCCTTCTTCCGTC
TTAATTATGATGATTATGTTTTTCCTAGCTTTTCTTTTAATAAAATCCTTTGGTAAATTA
CTCATATTTCCAACAAATAAGCGGCATGTGGGCATGAAAAAGATCAACGAACGCAAAGAG
TACGAGGCGGCTATGGCAGCAACATAACAGGAGGCAAGGATGCAGGAGGAGCATGCAGCA
AATATATATGCACATGGAGTAGGAGGCAATGATAGACGCGAAGCATACAACATTGATGGT
GTCCAGCGAGTGATCTGTCCAACTAATGATCCGCCATGCTTGGATTTTGATTTTATTTTG
ACATGTTCTGATTGTGAACATATGATTTGTTTTGCTTTTTTGCATTTATTTTGAACTATT
GAATCCTAATAAATATGTCGTGGACATGCATGAATTGTACTCCCTCCGTACCTAAATATA
TGTCTTTTAAGATATTTCACTAGGTGTCTACATACGGAGCAAAATAAGTGAATCTATGAT
CTAAAATATGTCTATATACATCTGTATGTAATCCATTAGTAAAACCTCTAGAAAGACTTA
TATTTAGGAACGGAGGGAGTATGGATTAAAGAAATCACAACTAGTTTGTGTGGATATGTG
GCAAACCAAATAAAGGGTTGCTCGGCACTGTAGACATGGCTGGATGTGTCCGTGGAGGTT
TAAAGAGTCGAATTTGTCAAGCCCGGCTGCGTGACCCTTCTCCCTCTTGGAACGTCACCT
TGTGGTGTGCATATCATGAGGCGCACGGTCTGGTCTGCGGTTAGGACGCAGCTACCTTAT
CCCACGTCCCCACGGTCAAACTGATCCACATGAGGCGCGCGCCCAACACCCCACGCTCCC
GTCTGCACCTGAGGCCGACGCGCATGTGATTTTCGGTCCGTGGTCTGGTCGTCGTACACA
CTCAGACGACCGACGGTTGCGACGGGCAAATCTGGCCGTCGCCTTCGCAGTTTTTCCAAG
CAAAATCTCCAGAGCAGTACGTTGGGCTGCTAAAATAATCGCCAATTAATCAAGCATCAA
GCTAGTGCTCGGCGAAAGCAGAGGTAAAAGCCGGCCACTAGCCTCGATCCGGTCCGATCT
CGATCGGGCAATCGATCCATCTCTGACGTAACCCAATCCAAAGTTCATTCCGGACTGCGA
CGGCTCTCGTTCCCGGGCTGCTTTCCCGTCTCTTTCGACCGGGATACAAAGGTACGCGAC
ATGGTTTAACTGGGCCGATGGCACTGTTAATTACTCTATCTACGTTTGCTTCGATCGTTC
ACACATGCAATGAAGGTTTAAGGCAGACGATTAGGCGAGGCATGACAGGTGTCGTCGATC
AAGGCTGTCACGTACGGTCGGTATCCTGCAGCCGTGCCCGGCCGGGGATAGGATCTCCAA
TCGTAGGATCGTGATAGAATTGAAGGTTAAACATGTCGATGAATCTATTTATTATCTTGT
AATTTGCACGGGCACACTCATGGTTACATGCATGCATGGTCGATCGTGCTTGAGCCAGCT
TAAATAGTTCAGGTGGGAGGAAGGTGTACCCGCAGTGCAATGGACCACTGTACGTATGAT
CACGACACACACTTGTTTCATCGAAGCAGCGACGCGCACGAGACGGCCGGCCAAGGAAAC
GAGCTGCATGCATGGACGTACGCTTGGTCCCTCCCTCCGAATTGAGTGAACACATATGGA
AATGTTAGGCTAGCTAGGTTGCTCACAGGTGGGCTGCATGGATGATGATTATAGCAGAGA
CTAGAGGGAGAACATCTGGAACTGGGAGAAGAAGATGTGGTCGCATTGCCAAAATTTTCA
AAATTATTGACTCCTTTTTCTCCTGTGGAAAGGACGTCAGTTGACGGTCTTGCACCAATA
TTCCAATTTCGCAACTTTGGAGTGATATCGAGAAGGAAAAGGCGCTAATGTTGCAAATGA
TTGATTCTTGTTTTATCGTGTGATACCAGTACCGCTCCTTGGTTGCCTTGGGTCGTTCCG
GCGCCAACAAGTTTCCACAAGCCCCAACTTTGGTACATCTGAAAATGCAGCACTATGGGT
CCACACAATCTATATTAATTATCTTCTATAGACAGACATCACTAGCAAGCAATAATAATG
TTTTTACTCGTTGTTCGGTCAAACGTCATAGGTTCGTGTGTCATATGGTTCGTGAAGATA
CTATCTTGAGACAGATTCATTTGTGAATGGCCTTGGATTTCTATTTTCATAATTATTTCT
TAAGAAGATTAGCATGACAATGATTATGGGCTTTGCTTGGTTGTCGTGTAATCATTAGTA
TATGGTTGTGCGCATCAATGGATGTTGATGTTGTGGGTTGATCCTCCTTTTAAAAATTAT
TATTAGTTGTTTTCTACTCTCACAAAATCATGACAAGCCACATCAACAAATTTGTTTTTA
ACCGTTAGATTTACTTGGCTCACTAACAACCATACGATCATCACATTGTTATCATGGAGA
TATCATTTACCTATAGATGTATATTGGGCCCTCATTCAATTTTGTCTATCACTGGCTTGT
TCAGGTGAATGAACAATACTGAAACCGGTGTGCATTAAATGGAGTAGATCACAATTGCGA
AATATGCCTAGTGACACAAAAATACAAAACAATGATGCATTATACATACTAGGATAAAAA
GGTTAGATAACTAGCTATGGTTTATGTTTACAATCATGTCTCAAAGAACTAAATTGGAAC
ATGGGCACCCAACCCATGGTATGAACCCAAATCCCGACAAGGGAGGCAGGCTCATGCTCA
AATTTTAGCCTCGAAGCGCCACAACAACGAAAAAGCTAAAAAGATGGGATTTCAAAGAAA
TATGTTTGATGGTGTACCGATATGCTTTGATAAATTTGCTATTTTCAAGTACAAATATAG
TATTGTTTCTAACTTGGGGCTGGTTCGGTCTCGGGGTTTTAGTAAAGTCCGGCCCAAAAA
AAGGCTGGCCCAAGGAGGCACATATTATAATCTATACAATGAACTTTAGCTTACTACACA
ATATATTTAGTTGTTGTGAAGGGTTCCGGCCATTTCTAGTAGAGTATTAGACAGTTGATG
GAGTGGATGCTGGTGTTTTAGATTTATGAGTGTACCACCTAACCTATATATTCTGGATCG
GTCAAATAACATATTTGTATTGTTTTTGCGTGACATGATATTACTAGAGATGCCAATAGT
AAACTTACGAATCATGGTCTAATTTCTCACATAATAACACACTTCAAAGTACTTTACTTG
ATGGTTTATTTTAAAATACAAAAAAGCTTTATCTTTCATTACCTATACATATGTTGCCAC
TAAGAAGACTGATGTGATTCAGATACACACATAAATATATTTTATCCTTATTAAAACGAA
TAGTTTGGTAACTATTCCATTCTGACAAGTGGATTTTTTTTAGAACACGGTATAAACGCA
TGCGTTCAGATACGCACATCCATTCATCTCTACAAACACACACATAAATTTTATACTATG
AGCACCTCCGAGAGATTAGGCCGGCATATTATTTTGAGATTGATAAAGTTATTATAGAGG
TCGCATAGTCGATGAAAACGTCTCTATAGAAAATCATGTAATAAATACAGAAATAATCGA
ACTCTCATGGGCTAAAGATGCCGCTGTCCTGCCAACAAGTAATAGCAAAACCATGTTACC
ATGGTACTGGTCATTACATCCTCGTCCGGCCAGCCGACACCTGCTACTGTTGGACACGGC
ACAACCTCAGCGCTGCCAAATTCGACGCACACGAACGAACCACATCGATCGGCCGCTGGC
TGGCTGGCCATGCAACAGCGCCTCCAGTCTCTGTAGTTCCCTACACGTACGCACATGCAC
TAGTACGTATACTTGCTCCGGTAGTAGCGCTGTTCCTTCATACGGGAGTGAGTACGCGCG
TAGGGAATTGTTGGGGCGACGGCCGGGGGCCACCAACCACGTGAATGCTGGCCGGCCCCC
ACACCCTCCGCTCCGCTCCCCTCCACTCCCCAGCTATCACCTTCAGGCATCACACCTCCG
TCGTCGTCCGTCCCCCTCACTTCACTAGAACCCAGGTTCACCTCCCCGCCAACGTCGCTC
TCGGCCCATCCCCCCGCCCCCCGCGCGCGCGCGTCTCCACTACCCCCTCCCTGCCAGATC
GCCCGCTCCAGCCGCGCGCGGCGGCGGGCTAGCTAAGCGCCCAAGCCAAGCCAAGCCGGA
TCATGGACTCCCCCGGCACCGCCGGCCCTCCGTCCTCCTGCGCGGCCGACGCGCAGGCGC
AGCAGGTGCCGGTGGCCGTGGCTCCCCCGCAGCCGCAGCCGCAGCAGCTGAGCAGGTACG
AGTCGCAGAAGCGGCGGGACTGGAACACGTTCCTGCAGTACCTGCGCAACCACCGCCCCC
CGCTGACGCTGGCGCGCTGCAGCGGCGCGCACGTCATCGAGTTCCTCAAGTACCTCGACC
AGTTCGGCAAGACCAAGGTGCACGCGTCCGGCTGCGCGCACTACGGCCAGCCCAGCCCGC
CCGCGCCCTGCCCCTGCCCACTCCGCCAGGCCTGGGGCTCCCTCGACGCCCTCATCGGCC
GCCTCCGCGCCGCGTACGAGGAGAGCGGCCACGCGCCCGAGTCCAACCCCTTCGCCGCGC
GCGCCGTGCGGATCTACCTCCGCGAGGTCCGCGACGGCCAGGCCAAGGCCAGGGGCATAC
CCTACGAGAAGAAGAAGCGCAAGCGCACGCCCGCTGCCGCTTCCGGGGAGGGGACGAGCT
CGTCGTCGGCCGCCGCGGCTGTCCTGGCCCGCGGCGAAGGAGGAGAGCAAAGTGGCACCG
GCACCGGCACCGCGGCGGCTTCGCCACTACCGTCGTCACCCACCGGCGCCCAGGCGGAAG
GGAGTAGCGTCACTGCTGCACCAAGCACCTCCCGAGTATAGTAGAGTCAATCACCTCGCC
GACAAGAGACCTCCGATCCCTCCTTGTCGATCGTATTTGCTTCCCTACGTACGTGTCGGT
AATGTATACATCGATCGCGCTTAATTAATTTGCATGGTTTGAGCTATATTTCTCTTGCCA
TTTCGTTGTTTCACTACGCTTCTCCCTTTTCTTGTTTTAATTTCTTCTTGTCGTCTCGAT
CGAGTCCTTGTGATTTTAGCTGCTACCTAGGTCAGTGAGTAGCTGAGTAAGTATGTGCCA
GTCGGCAAATGGTAATTGAGATTTGAACATCGGTCGAAGTCTTGGGAACTGAACGATTGA
TCATCAGTGCTAGCTGCTGTTTTGTTCATGTACGTCCCAGATATTACCCTCCATGGTGAC
ATAACCGCAAGATTTGAGGTTAATCAATTGAGTATTTAATTAAATTTGATCTTCCATTGT
AAAGAATCTCTCCATTTTCGTGTCATTGTCATTCGTTATTTTCTCTATAGTTCTTGGCAA
ACATTTGGACACTGCTATAGTGAGACGTTGTACTGTGTACTGGCACATGCATTTTCACTT
CAAGTTTGCGTTCCACTAATACTACTGTGCAAATGGAGACACACGCAGGTGCAAATTAAA
AGCTTGCATGAATGGTGCATGTACTCCTCCGGTGCACACATACAGTAGTCAAGTGTAGGA
CCTACTGAACAACACTTACCATTGTCCATTGGATTAATCCCTTTAATTTGGGGGAGAGTG
ATTATCCTGCGTGCATTTCTTAATTTAATTACCAGCTGGAATTTAAGGTTATGTCCTGAT
AAACTAGGTACAGTCGAATTTGATCCTGTAAAATCCGATCTAATTGAGACCGAGTGTCCT
GCTTTGAAGGAGTGCAGAAGTAAGGCAGACCGATCTTCTCTGGTCCCCGGCCGGATGGGA
CTGTAGGCTCACTGCGCGCATGCGGGGAGGCCCATGGCGGCGGCGACCACACGTGCGGGC
GCGCTGCCGGCCCACTGTTGGCTGCTCTCTCTCCAAAGATCTCACCCCCCACTCCATCTC
CCAGCTCCGACGTGCGCGGCTGGCCGGCCATGCAGCCGTCTGCATGCATGCATGCATGCA
TGGCTGGTGCAACTTCCGTGAGCTTGGCTTCCATGCCCACGCCACGAAGACCCCTCCCTC
CCTTCCATTTTTGACCCTCCCTCGCCTTGCTCTATTTTTCTTTCTCCTCACGTTGCTTTT
TATCCGGAGGGGAAGAAACCTCAGATTTCCATATTGAAACGATGAACGCAACTTACGGAT
TGCCTTCTGTTTTGTATCCCCCCTCTCTCTTCTCACAACTTAAAGATTGCCTTCTTTGAT
CGATCTCCATTCCCCCGTGCATTTTTGGCCGCAGCCGCCATGCCCGATCGATCCCCTTTT
GTGAGGGGAGAGAGAGAGAGAGACAGGGAATAAGAAAAGGAGACAAGGAAAGGAGAAGAA
GAAGAACAGTAGCTAGCCTTTTCCTCTCCTCTCCTCACTTTCTCGCGAAGGGACGCACAC
ACGGCGTGTGTCGTGCGCAGCGCCCTGGATCGTTAGCTAGGCGCGAGAAAAGGGATGATG
CTAGTGAATCCGCTAGGTAGCTCGCGTCGACCTCCATTGATCGTCTTTTGCATGGCCCCT
CCTCGATCGCATCATTTCATCATCTCCTAGATGGATCAGGCTGGCCCGGCCGGCCCTCAC
GCTGACCGGCGTCCATCCATCTCTGATCCGCTCGATCGATCCGCACTGTGGCCAAGCACT
GTGCATGCACTTTGCCCATCTTTGCAGGAAAACGTGGCCCCACCGTGCAAGCACTCCCCG
AGCATAGACCACCGGCCGGCTTCCCGCGTGCTGGCTTTTAATTCTGCAATGTCGAGTCTT
GTCCTAAGTTAATGCGCTACATCAGGTTTTGGTTACATATTAATAAGGCTGCGTTTCTAA
GTTTGTTTTGGAGTTTTATTTACCGTGTTTTTATAGAGACCACGGTTTTAATTGTTTTTT
GATGTGTTTGGCATCAACAAATAACACCCTTTTCTTATAAACCGTAGTATCTCCAATGCT
GTAGTCTTTTTGTTATTTTTTTAAAGGTCTTGACCTCTCTTATCATCAAAACTAAGCTAA
ATAAAACTGTGCTTTTTTGGAGTATTTATTATTGTCCATTCATTGAAATACCGAGGTTTT
AGAGATTACTACTCCATCCATCGTGGTTTAGAAGACGTGCAGCCAAATTAGGCGTCAATG
GCGCCTGTTTCCTGTCCGGAGGGGCTAGGATTTGCAGTACCATTTTTTTTAAAGATCCAG
CAGCTGGCTGGCTTATATTGAACAAAGCAGGTAGAAAGGCGGGCTACAACAAGGTGGGAT
TGATCCTAAGGATCAAGGAAAAAAAAGAAGAAGAGGAAAAAAGGGAACAACATCCCAGAA
AA