morexGenes - Barley RNA-seq Database

Contig contig_136575
Source Contig contig_136575
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136575 (10858 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_136575

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5701	1	2322 bp	MLOC_5701.1	Available	Available	LOC_Os07g15370.1, FRAME:-1, EVALUE:0.0, 13107.m01610 protein metal transporter Nramp6, putative, expressed
MLOC_57064	12	7743 bp	MLOC_57064.4	Available	Available	LOC_Os09g37840.1, FRAME:-2, EVALUE:0.0, 13109.m03758 protein carbohydrate binding protein, putative
CDS Structure of MLOC_5701

CDS Structure of MLOC_57064

Contig Sequence (10858 bp)

>contig_136575 10858 assembly3_WGSMorex_rbca.fasta
AAGTTTGTTCATGGAGGGGGCAAAGTTCATATGAAGTGAAATTTTTTGACTACAATAACC
ACAATCATAATAGAAGAACCAATTTGTTAGAGGGGGTCTAGCCCCCCCTCGTCCCCCCCT
AAATTCGTCCGTGGTTGTAGATACCACTGTCCCTCTAACCATCCAATCACAGGTTGGTTT
GCTACACAACTAGTGCTGGTCATGTACTTTCTTCGTCACGGTTTAGAAGGCTCGCTTGGA
AATTCTCTGGAATCTAGATGATTAGTGATTGACTGTGAGATGGACTGAAAAATAGCATTC
ACACTAGACATGCATATAAAAATAGTACAATGGAGTACTAATTAGCTGTTAGGGGTAAAT
ACAATGCGCCATAAACCTTGTCTATTGTGAAAATACACGTAAATTTAACTATGTCTTCTA
AACTGTAACGGAGGGAATAGCATATTTCACCCTTGCTTGAATGCCATTTGATATGGGCGG
GTCAATGGTCAGCCACCCTTTCAGCCCGTTAGTCGTCACATATTTATAAAGATTTTAAAA
GCTAGCATTTAAACGATAAATCGATCAATGCTGTTGGATTTGATTTGCGTCCTTAGTCTT
AGGCAAGAGAATTGTTTTCCTAAAGTTTAAATGGGCGATGCCAAGATTTTCTTTACGCAG
TTGGTTTGAACAGCCAAAACCACCTTAATCACATCCGAGAAGGACGGATAAAATGCTACG
AATTTCGACACGTATACACGGTCGCACAGTAAAACATGTACTAGCAATTACTACATCATC
ATAATCATGCAAAAAAATAAAAATTACTACATCATCATACATATACACTCTACTGCATAT
CTCTAGCCTCTGCTGTGGGCCGGGAGCGGTATGTCTGCGAGGTCCTCACGGTAGGGCACG
GGCTCGTCGTCGTCCTCCCCGCTGCCGCCCGCCGCCTTCTCGGCGTCGGCCTTGCACGAG
TCGGCGACGAAGGTGACGACGGTGTCCTTCCTGAAGGTGAGGTAGACGACAGCGACGAGG
TAGACGAGCATCAGCGGGCAGACGACGACTCCGACCAGCACCTTGGCGTACGTTGGCAGC
GAGCTGTTGATGAGCCACCCCATGAAGCTCGTGCTGAGAAAGTAGACGTTGATGCCGATG
AGCATCAGCCCAAGCGTCCACGAGAACACGATGATCTGCACGCACGCACGTACACATTCA
ATTTGCTGTAAAACATAACAGCACTTGTAGTAAAATACCAGCTCAATTTTTCTTATTGAT
CTGATATCATGATGATATTGTCGACAAGATACCCATAGACGTTGTGCGTGCTAGCATTCA
TGCATGTGAATCGATCGGTCGTCCAGACGCTTTGATATAAGTACCTATTTGTTCGGTCCG
GCTTGGACGTACGTGCGCTGCGTGTACAAGTGGTCAAGTGCATCGATCCATCAATGCATT
TTCATCAAGAACATGGCATGTAGGGTGGCCATCGATGGATCGATCAATGCATCCATCATT
TTGTGCAAGGATAGCTAGGGTGGTACGTAGGTACGTTTGTGTGGGGATGCACAATTATTG
AGGTGTGCATGATCATGCAGCTGTACACGCACGCACCGTACGTGTCCAAGAACAAGCAAC
ATGCATCGATCGAGGACAAACCAATAGCGAATGCTTACGTAGATGGAGTTCTTGTGCGGG
CCCATCTTGCTGCTGCTGCTGCTGAACTTGAGAAGCGGGATGAGTGCAAATGGCAGCTCA
AACGACAGTATCATCTGCACAAGGAAAACCCAATCGCATGAATTAATGAGTGAAAGAAAC
CAATTATACATAGTAGGATCATAGAACCCAATCATTCCGAGGAGTTGCTACAAGAAGGGT
GTAGAAGGCCACCAAACTACTGTTTTTAGATGCTTTGCTAGTGCATATTTGTCAGTTAAG
CACTTGCCGGCTGCTGGCTGTTAGCTAGTAAGTCGTAGTTAAGTCGTGCGAAATACATTA
GTGGATGGGGCACTATGTGTGTGTGCGTGTGTGTGTTTTCTGACCGAGCAGCGACGGGGA
CCGGCGTTTCGCCGGTGGCAATGCAGCCGCCGTCGTTTTCGCCCGCTAATGTCGACAGGG
GGGGATGCCCCCCGTAAAGAGAGAAGGCGAGGGCGCCGTACCGACGCGATGATGATGAGG
CGGCCGGCTCCATTCGACCCGCCGATGATGGAGACGACTAGGCTGGGCGCAATGGCGATG
CAGCGCGTCATCAGGTTCCTCAGCCACGTCTTCATCTTGATGTCCAAGAACCCCTGGCAG
TTCATTCACCAAGAGGGAAAGAAGGGTCGTCAGATTATGCTTTAGGATGTGACTAGGTCT
CAGTCGACTTAGACTTAACCAAATCTCGGTCAAATGATGGTATGTAAGAAGAAAAAGGAA
AAAACATAAAAGAAATTGTTTGCACAAATCTTCAAGATCATCGGATTATACATAAGAACG
TTTTTGACATTAGTGTACTGTCAAAAATGTTAATGGAGGGAGTATATCACACGATGGAGT
TGTCGGATTAAGAAAACCAAGCATGCACGTACGCGTGGACGACTAACAAAAGTAGAAATT
AGTGGTGGAGTCCTACGGACGCACAAAATATCAGGAAGAAGAAAAGATGACAGGTCGGCA
CATAACTCTACTTACCGACTTCTAGAACTAGAATAGACATGGCATATACAGATCTGGGAA
GTACCTGCATGATGTACTGGCCGGCGTATGTGCCGGTGATGGTCGAGCTCTGCCCTGACG
CCAACAGCGCCACCCCGTACACGATCGAGCTCGACCTGCCCAGCACGTTCTGATATCCAT
CCAACAACACAAAACATATCAATCAAAAGAGTAAAAAAAGTACCCTACTGCAAATACTTG
GCACCAACTAGTCGTGTAAATACCTTGAGCAGGAACGAGGAGTTGTCCAGGCTGAGGTCA
CTGCATTTGTCGATGTCCTCCGCCGAGAGATTTTCCCCGAAGCAGACAGTCCCGGACACG
GAGACGACGGCGATGTTGATGAGCAGCGCCACGAACAGCGCGAATCCGCTCTCGTAGAGG
AAGAACCTGCAAGCGTCCTGATCGACACACACATATTTAGTATACGTACATGCCATAAAA
AACGTGTATTGTTGAAGGAACCGACCTTGATTCCTCTTACTGACGACGGCGTCTTTCTGG
ACAGCACCAACGCCGAATGCAAGAACAGGTTGTGACTGTACTCAAACGAAATGAGAAACC
ACGATTTAATTAGTTAGCCATCCATAATTAATAACATGTTCACAGTTGACAGTTTCTAGC
AATTCGACCCTTACGGCATAACTAGAGCTCCAAGGAGGGCAATGGCGTCTGCGGTGGCGC
CATTTCCCTTGAGCTTGGGAATGAACAGCCCTTTCAGGACCTCCTTCGCCGGAGGCTTCA
CTATGCTCAGCTCCCCGAAGAAGCACGCCGCCATGACGAAGACGAGCATCGAGATGAGGA
ACTCCAGCTTCCGCACCCCGTATCTTTGCAGGCCGAGGAGGAGGAGCGTGCTGGAGCCGG
TGATTAGAACCCCGATCCACACCGGGATGCGGAACAAGAGGTAGAAAGCGAAGGCCGTCC
CGATCACTGCATATAAACAAATTAAACAAGTTAACCGATCGGTTTCGTAAGAGATTTGGA
GGACATGCAACGCTATTGTAGATTACTACTCTCTCCGTCCCCGAATAAATGTCTTAACTT
TATACTGGTTCTAGTATAAAATTATACTAAATTTGAAACATTTATTTTAGGATTGTTGCT
ATTTTCAACTGCTGATGTCGTCGTTCCACCACGGAAAAATAAAAACGAAAAACTTGTTTT
CGTCGTTGATACGTAGTGTTCTCGGCGAAAGTCAATAGAGTAGAATACATTTGTGTAGAC
CAGTTCAGCATATCTTGACTCCACCATGTGCATACTTGCTATTAGTGTTTGTTATTAAGG
GATACGGTGAATTAACATTGATATATGGTTAGCAACGGTTGACTGAGGACAAGAAGATAG
GGAGGAACGAATGCCGTCCATGTGGGTCAGCAACTGGACGGAACGTGGGGGGCGGGACAC
TTGGCGTTATCTATGCTGTCGTGTTATTCCGGTAGCTATGAGTGAGCTTGATCTTTTCTT
TTTTTTGCGAGTGAGCGAGCTTGATCATGACAGGGTCAAATACATGTCACTGAGACCGAG
ACGCCAAATTTGTAAGGAGCACTATGGACAGCATATTGATTTTCCCGGACAAATAAGAAA
GACAGCATAGTGATTGGAGTGGAACCTTCCGGGATATCGGCGGCGATCACCGCCACCTCC
GCGAGAAGCCAGAGGCAGATCATCACGGGCTTCGGATACTCGCTCTTGCATATCTCGGCG
AGATGCTTTCCTGCATGAGGGTGAGTGGGATAAAAATGGGCATCAGCACAAGTTGCATTT
TGTTTTGTATGTTTGCGATTGGTGTTGTGGACTTTAATATACCCGTAACCACGCCAAGGT
TCGCTGCTAGCGACTGTATGATCAGCGCGAAGATGAGGCCAATCAGAATCACCCAGAGGA
GCTGCAAACGCACAATCGACCGGACAAAGCAAAAGACAGATGCACAGTTAGAAAAATGGC
TTGCTAGCTCGATGCACAAAGATCACTAATAAAAAAGTGCAATGCCATGGAAGGAAAAGT
GAAAGTAGAATCGCCTGGGAAAAGGTAGAATCAACCGAGAATGTGCACTACCTCATATCT
GTGATTGGCTCCGGCTTGCAGGTCCGTCTCCACTGCATCAAACAATTCCATCCATCACCG
TGAGCGAGGATAGAAGTGCGAGGTAGGAGAGATGAACTAGCGAAAGAGAAGGAGGAGAAG
GTGCTCACAGTTGCCAGGATCCAGGTAGGCGAGGGACACCATGAACCCTGGTCCAACATG
GGAGAGGAACCGCTTCCATGCCGGCTCCTGTACAGCGCAGATACCGTAAAATTTCAACCC
ATCTCTCTAGCCATGGCTAGACACGCCATGAACATGACCACACGTACGAGCTTCCTTCCA
CATACGCACAAGAAGCCGAGCCAGAGCAAGAGAGAGAGAGAGAGGTCACCGTACCTTGAC
GAACGTCTCATCGCCGTCTCCAAACTTCTTCTCACCCTGCGCATCTTGCGCGGCCGCGGG
GTTGGCTCGCCAGCTCCTCCCCCTCTCGCTGCCCGGCGCCTCCCTCTCGATCTCCATTGC
CGCCGCTGAGCTAGCTAGCTAGGCCGGCCGGCCGGCTGCGAGAGCGGAGCGCACTAGCTA
GCAGGTAGCAGCTCGCCGGCAAGGGTTGGAGAAGGCGGGGGCAGTGAGGTGACCTCAGCT
GCCACCCTCCGGTGGTGCTTAAATACACCCGGGAACGATGCGTGTCCCTTTGCGTGAACG
TACAAGTGATAGCGCCATCCCGCATCTGCTGCCCGACGGATCAAACAAGGGGTTGTTGCC
GGAGTAGCCCTGCCGTGTCTTCCCTTTTTTGCTGCTAGAGCTGGAGCTTGGGCATGGAGG
GTCACGGTCACTCAAGCCAAGCCCCGGATGGCGCCTGCATCTAGTGTTTGTTAGCTCGGC
CGGGGATCATGCTGGTTGGTGATATGATATCTTTACTGTGTTTTTTTTGGAGGGACGTGT
TGTTTTTCTATTGGACTGTCTGGCTGCTCTGGAGCAAATAATTGGCTGGAATATACTCTG
GAGAGGCATGCATGGGGTGGTTCTTTGTTTACTGTGAGGTGAGATTGTACGTGGTTCGTA
TTTTTTACTGTCGCTCCTGAAATGTACCGTGTCGTGTGGGATCGAGCGGGTGCAGACTTT
AGGGGCAGTACTTTGTTAATTAGGACGTCTCATCACAAAATACGTGAATAATTAATTAGA
ACGGCACGACTGGTTCTAACTTGTAAGGGGTGATGAGGGCCAGTTTGAGAAAAACAAAAC
TCCATAGTTGCAGGTGCAAGCTCTTGTCATATGCATGGGGAGCGCAGTGCCGCCTCCAGG
AACTTGGTGCCCTGTTTCAAAAATAAGAATCATATAAGTAAATAATTCATATTATGAAAA
AAAACATACTCTCACTTCATCATGTAATTTGAATATGTATTATGTTATAAAATGTTTGAA
ATTTTATCAGATATTAATGTTAAAAGAGTAAAATTGGTGCTAAAGGAATAAATTGACCTC
ATGTCCTAACTAAAGCATCGCTTTTGACGCACCAAAAACAAGTCGGACCACGTGTCCCTT
CCCTGGTGGCACGGGGAGGAAACCAGATCCGCACCGCCGGCTCATCACCTACCCCGTCTT
CACCCTCGCCATCATTGAAGGATGTTGTAGTGATAAGCTCGTATGGCGGACTTCGAGCAG
TGGGTTCTTTGGGGCGCCTTCCCCTCTAATTCAGGTCATGGAGTCATCCGACGGCATAAA
CTTATTACAGTGGTGCGGTGGTCAGGCGGCCCGGCAGGCTAGCTTTGCGGCAACAACGGC
TATGCGGCGTCCAACGAAGGGGTGTCCCCAGTGACTGCATCTGCTTCCCTTGCCGTCTCG
GGTTTGACCAACGGCGACGTATTTGCTCGACACGACTCATATGTGGCCTCTCGGTGATGA
CTTTTGTTGTCTACCAGCTCTCCAACACGAGGTGGCGGTATGATTTGCCACCCTCTTTAC
CTTCAGATTTGTAACGTGGGCTCCGCGGGCGATGAGCCTAGTCGGGCTCCTTGCCGTGAA
GCGGATGTCGTCGATGGAGGTTTGGTGGTCCAGTCGACAATAGACTTAGGAGACGAGATG
GACAGCGAAATCCAAGCTCAAATGTCGTTTGGACTTACGGCAACGATGTCTGCATGCGTC
GTCGCCTTGTCGAAGGTGTTGTTTCAGGTTATTGTCTTGTTGTCCTTGTTACACCCGGAA
AAAACCCTGGATCTAGAGATACCTGGATCAGACGATGGCAGCACGAGTGTAACATTTCCC
TTTTGAGGGCAGTGGTTTGTAGTTGGTGTCGACTGGCGAGCCCGTGGTTGGCAATGGTGT
TTGTTGGTGGCTTGTGTTGAAACGGCTATGTGGATGAGTGACAGCAGGGTCACGGCAATT
ACGGGTATATTAACAGGCTCTACTCATTAAGGCTTCGTTAATTAAGCTTGTGCTTGTTAA
GGCTCGGATTATTAAGCTTGTTAAGATTAACAAGCAAAAAGACCGGTCCGACTCTGTACA
TTTAAGGCTCATAGCACTCGTTAACAAACTACAATATGTTAAAGCCTCCATGATGAGAGT
GTGAGTGTAAAATTTACAAAGGAAGAAGGTGACTATAGGAGGAGGTGCGCTAGTTGTTGC
CCCCTATGGGTTGGGATGGGTCGATTAAGTTGACTAGATGCAGGGACGGAGTCAGGATTT
GAACATAGGAGGGCCGAAGATGGCAATGCATGCGCAAGAAATGCAGGATCAAAGTATATC
GAATCTTAAATATAGTGTCAATATCAAACAGACAATGTGTATTTTTTTCTTGCAATTACA
TTGAAATAGCTACATTTTTTATTAGCTTAGATTTATACTTATGCACAACAGGCCCATTAA
ACCATTTAACATCAAGCTTTGTAGTGATTTCACTCGTAAAATATATAAATGTTGCTCTAC
ATTCTCATCAGTAGACCAACTCGGTTAAAAGAAATGGCTTCAATTGTTAGTTGTCGGTGG
TCTCTTCTTCCCCGTGCTTTATGCAAACGGATATATATATATATATAGGACGACCGTTTG
GGGCACCTAGGTGCCCAGGCTCCTTACCTCGTGACCATCGGATCTTAGATTCATGCATGC
AGATAGTAATGGTGTGAGTATATTTAGCATCTTCCATATATGTTTTATGGAAGTAAATGA
CAAGAACCAATAACTTTTTGATTTAGGTGTCTTAATAACATGCGTTGAATAGGACAGTAA
TTAATGCAGTTTCTTTTTAATTTATTTCATTGTATGAAGAATGAAAACTCCGATCAAGTA
TATACATACAATGTTATTATTTTTATGGGGTATGTGTGTGCAGTACTCATGCATATTGTA
TTTACGCACGTACTAATTTCTTAGGTATATCACATGCGAGTATACTGGAAAGTAATTTAT
TCTTAATTTATTTCATTGTATGAAGAATGGAAACTCCGATAAAGTATATACATACAACAT
TAGTATTTTTATGGGATATGCATGTGCAATACACATGCATATTATATATATGCACGTACT
AATTTCTTTGGTATATACCTACCTTCGGTATATTTTTGACCAATACATCACATGTGAGTA
TATTGATTTTGGGATATATCACACGTGATTATATTGATTTTGGGTATATAATTTTCGAGT
ATGTCTCATTTCAATTATATTCGTCGGGTATATCCTTTTGGGTATGTCTACTATCATTTA
CGGATATGACTCGAACGAGTATACATATATATACATACCTAAAAGTAAGAAAAGTGATAT
ATATATAAAGGATATATTTGGATATATACATACATGCATACATGCCATACACTTGAGGAT
ATGTACATATTTTCGTTAGGTATAATATTCACTAACTGGTATCACGGTCTATGTGTATAT
ATCGGATACATGTACATATGTACGTATCCAAGTATGAATGTTCATGCCATTTTTGTTTCT
GAAAGCAATTATTGACAAATTAATATACTAGTACATGCAAATAAAATATGGAAAGTCATT
ATTTTGTTTATTAAACGTCATTCACTAATAAATATGACTTGCCATAACGAGCCTAGGTGC
CCAGGCTCCTAGGTGCCCCAAACATTTTACCTATATATATAAACATGTCTGGATACATCT
GTAGACAAATCTAAACCAAGTATACCTTAGGTTTAAATTGGACAAACCACAAGCCGTGGT
GTGAGAGCCGAGAGGCGGGGATGTTTGCCAGTTAGAAGATCAGCATGTGGTAGACTCACA
CGGTCATGCAATCTGCACCTTCATTAGCCTGGTCTCATCACTGATGCTGATGGTCTGCCG
CTCGATTAAGCCCTAGCTCCGCTGTGGCGGCGGAGGCGGCAGAAACGACCGACCGCTCGA
TTAAGCCCTAGCTCCGCCGTGGCGGTGGAGGCGGCAAAAACGATAGAGATGGAGTTACGC
AAACAGATGACAAAACGATGTGTACTGGTCCAATCGATAAATAATTTTCAGGACCTATAG
ACAGATCAAATCAATTATAGTACGTGGTATGTGGGCTATCAATTGTGGGCTTGGGCTATT
TAAACGTAGAGGTCAGGCCTACATGTTTGCTAATCGCCACATAATAATTAGGAATAGACG
TCAAACTAGGCCACATATCCTGCTGAATCCAACGTAGTCCCCGCTGAGTATTGTTGAGGG
AGGGCGATCGATAGGGGGGGTCTGGCCCCCGCTCGTCCCCCCTGTGGCTCCGCCACTGAC
TAGATGGGTTGAGGTACTGCTATTTTTATATGTGTTGAGTTTTCTCCGAAGATGAAGGAT
GATGTAGTAAATTAGCAATAAGTATTTTCATCAGTTAAAAATCATGGTTTATCAAACCAA
TAGGAGATTCACGTAAACAACTGTCGACGGTACCTACAGAGACAAGAACAAATACTTGCA
TCCAACGTGGGCAAGATGATTGTCAATTCCTTCATACTCGTTAATTGCAAGGATTAAATC
TGATAGTAGTAGTTAGATAAATTGCAAAGTGAAATGAAAATAAATAAAGTGTAGCAAGGT
ATTTAGGGTTTTAGTAAATATGTTGAATAGAGCAAGCGACCATAGTTTTCATTAGAAGAA
TATGTCTCAAAAACATAGCATCCGACGGGTAAACAAATTATTGTTGGTTGATTGATAGAA
AAGTGTATAGTTATGACGTTATTCATGTCATGATCAGTACATCAGCATTACATTTGTGAG
AAGTAGACTGGCTACTGCTTACATCTATTATTATTACTCCATTTCGAGATCAATTATGCT
TGCCTCTCTAGGTATTATGTTTATAACAAACATGGTAATGTCTGAGGTGTGATGACATAG
CGTAGACACAATAGAGTCAAGCAATATGATTAAACCCCGATGTTTTCCCCTTAGTAGCAA
CAATACAAATATGTGTCTCTCTACCCCTTTTGTCATGAGGTGGGGACGCCGCAAGAATAA
ACCCACTAATATGCACCACTTCCACTAAAGATCTACTGCTACTTGTAAATTGCGTCGAGA
TTTTTCTAGGAAAAGGAGGGGAGATGCATGACAGTAGATATAAGTATTTTCCTGAATGAG
AACCAAGGTTATCGAACTAATAGGAGGACCATGCAAACGGCCGTCTTCAGCGCCTACACA
CAAAAGAGCACACACTTACACCCAAACGGGCAAGAGGGTTGTCAAGCCCTTAAACTCGTT
ACTTGCACGCAATAAGTAGTGATATATAGATAATAAAAATATATTAAATATAAAAAGTAA
ATGCAAACAAATAAAGGCAGCGGGGTATTTTTATATTTTGATATTATATTTGTGAAGACC
CAGGGCCATATTTTTCCTAATGGCATCTCTCTCAAAGATAGCGGCATACGATGGGTAAGC
GAATTACTGTTAGGCAATTGATATAAAACCACATAGTTATGAAATATTTATTTATGAAAA
TGATCAAACATATAGGCATCACCTCCATAAGCAATAGACCGGATCTTGCCTGCATCTACT
ACTATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGTAAAAACAG
AGTAATGCTTTGGGCAAGGTGACATGATTTAGACAAAGTAAACTCAAGTAATATGAATGA
ACCCCGTCATTTTATCCTTAATGGAAACAATTCAATACGTGTCATGTCCCTTTCTGTC