Contig Data
morexGenes
Links



Map Locations of contig_136532 (5833 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_136532

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5668 1 2049 bp MLOC_5668.1 Available Available LOC_Os02g49700.1, FRAME:+2, EVALUE:2e-111, 13102.m05634 protein homeobox associated leucine zipper, putative, expressed





CDS Structure of MLOC_5668






Contig Sequence (5833 bp)

>contig_136532 5833 assembly3_WGSMorex_rbca.fasta
GGCGGCCCTAGGGGACGCTCGGGCCGCTCCCGTGAGAGCGACGCGAGCGAGCGTTTTCCC
CGTTCCTTTTAGCAGTTGTGGCACTTTCATTTTGCTCGCTCCACTTGGTTTTATACTCCA
GCTGTATCAGTAGTTTGCTCGGAGCAAGTTGCCACCAAAATTATAGTTATGAGCATAGGT
TGATAGGTGGTTGAAAATTTGTGTTCCCCCAGTTCTAAAAAAAACACAAATCAAGGCGTG
CATGCTGATGCATGCATACAAACACAAATCAAGGCGTGCCAATCATGTAAATATCTGGAT
CCTATTTTTTGAGAAAAGTGTGAGAAAGGTTTTTCTAGGGGTAAAAGAGTAAGTGAGAAA
GTTCGGAGCCTTGTTTTAGGAACAAGACGGAGTAATACATACGACGATCGATGTGTGTAT
GTCGTGCGGACAAGCGTGTTCATTGTAGATTGAGTTTCAGGTTTTGTTTATGCAGTGGCG
GAGCTAGGATTTAACTTGGTTCAAGGCCATTATAGTTTGGATAAGGAAAAAAGCAGTACT
TTTTTGGAATATAGAGGTTAACATGCAATGAGTTTTTTTTTGCTTCGCAATTATTTGTTT
GAAATGATGATAAACCACGGGTTTCGATCAATGTGACTTCGCTAATTATTACGTACTTAG
ATTGGATTTTGCGTTTTCGTTATGAAGGTAATGTAAAGGGGTAGCCTAGTTAGAAAAAAA
TACATGTCAGTCTTAGCATATGCTAGTTAAACATCATTCCTTCAAAAAAGGACACCACCG
CTAGCTCGAACATCAATCGATGCACACATTCATATATTACTTAATTACTTAATGATGTCA
AGAGAAGCCTAACATTCATGTTGAACAAAACGGCTTATAGAAAATGAAGACAAAATTGAG
GTCATCCAAAATGGATCCGCGTCGCGACATAATCTCCACGATCATACCTAAAATCCTATG
ACATGTGACAGAATTAAACAAAACGTATGTCACCCATAGACAAATCTTTCAATAAGGTAT
CCTCATGTGCGCATCGATGTTGGCGAGTCCAACCAAAAGTCGAACATGAAATTTTCATAT
CCCAAACCAAGCTTCAAGCCAACACTTTCAACAAGGGTGCGAGGCTCACATACCAACTTT
ACCTAATCTCACCTGATGAAAAGATTATGGGTTTTTACCTGGAGTACACTCAAAATTGTC
TCAAAACCACCACCGCAATCAACCTCTCTACCGGCTGACGGCGTATTGCAAGCCGAATCG
TGACACTGATTGAAGACAAATCCCGCACACATCTCTGGAGAAGACATAGGAACTTGTTAA
ATGTTTTTAGCTCTAACTATGAATGTGAATAGAACTAGTAGCATTGGCAACACTAGAATT
TAATCAATACACGCTACGAACCTTAGACCAGAGACTTGGGAGTATAGAACTTCGATCATG
CATGTGTATTCAATACATGAATTTAAATTTGTCAAAAATCACAGATCATTCCTACCTATG
TTTACCATTCGAGAATCTGACTTACAAGCACATTTGTACTAGTGTACGCACAACCCTCTG
TCTTTTCCATTGTACTAAAATAAACTCAACAAATAAACCTATTACACTCATGCTTCCAAA
ATAGACGACATCTTGACGGTAGTCTCTTCTTCAAGCTCCATGACTTGTAGGGGCCATTTG
GTTCGTCGGATTTCTAAGGCGCGGTGATAGAAAAAAGATTGCATGGACGTTTAATCTCTT
ATACATATGAATTGAATGTTATGCCATCTTCATAGAGTAGCATTGCATGGATGTTTGCTT
GTACGAAAAAAAAATCATACACGATTCTAACATGAGATTTAAGCCTATGAAAATTTTGTA
CAAAGTTTGGAACAGATAATTCTATAATTTGTTTTATAGATTGTAACCTAATGTTAGATT
TCTTCTTTAGAAATTCAATTAGTCAAAGATCGATAGGTTCTACTCAGAAATTATTTTGAG
TCTTTAAATACGTGTTTGGTTGGCATACTAAACTCATACCTGGCCAAACGGGCCGACCCG
GCCTGGCCCGGCATGGCCCGTTGTAATCGGGTCTGGCATGGCACGGCCCGCCCAAGCATA
TTTATTAGTCGGGCCGTGTCGTGCTGGCCCATGGGCTGCGCCTCCAGACCCAGGCACGGC
CCGGTTATTAAACGGGCTGGCATGTTGGCCCAATTAGCATGCTGGAAAGCATATTTTTAG
CCTTATATGCTTATTTTTTTGACCTGTTGAGCCATATGTTATGTATATATATATATATTA
AAAAAAATCTAAAAATATATATAAAAATTAAACGGATCGTGCCGTGTCGGCTCGTGCGTC
CAGCCTTCAGGCCCAGGCATGGCCCGCGTGCCACGTGTCTGACACGGGCCCGTTTAAGTC
GTGTCGTGCCAGGCCCGTATCTTGCTAGGCCGGCGTGCTATCGGGCCGGCCCGATTTACA
CGGTCCGTTTGGCCAGATCTGACTAAACTGACCACACTTTGCCATGTCACAAGTTAGTCA
AGTTTAACTGAGTTTTTGTTAACATATTAAAAACGCAAGTTTTTTTATATACACTCACAT
ACACCACCTTTGTAAACGCATACACGCATAACCTCTACTCATATGAGGACCTTCGAGATA
CCGAGCTCTGAGTTAGCAAACACAGTCGTAGCAAGATTTCCTTCATGCAAACTTGACCCC
GCATGTAATTGACTCAGAAAAGCAGGTCTAGGTATGTCAGGTGTGATAAAATTATGTGAA
GTGTGACAAAGGGTGGTGTCAATTTTAATCGCCTAACCTTAACCTTAGACATATATGGCA
AATGATGACAACCAATACAGAACCAAACATGCCCTGTACGTAGTAACAAGCTGCGGTTTC
CTTGAAAAAAAAAAGAAGCAAGCTACAGTTTTCACCTTTGAGCGCAAAAGATCAAATGAG
AAGGGACACCCGGCGTCCAATCCCCGTTGGTTCGTCTCGATCCCCCGCCATTTCGTCTCA
CCCACCGCTGCCACCAACAAGGGGCAGACTCGTCAATCAACACCGCTCTGGCGCCTATAA
GAAGGTTCCTCCCCATTTCTTCAAACTTTAGCCGATCAGTGTCCTCCACAAGGAAAAAAT
ATATACTCTACTACTATAACCAATACAAAAATACTAGTCCCTCAATAAGAAAATCTAGAC
AAGTTTTTCTTTTCTTTTCTTTGTGAGCTCCCTTCCACCACCAACCTCTTGTCCGGCCGG
CCGAATTGTCCCGCTCCGGTTTGCTTCTTCTCCGGCGAGAGGAGAGGAGAGAGGAGTAGC
TAACCTTGCCTGCTCCTCCTGTGAGCGGTCTCCTCCCCGCAGGGCTGAGGAGATCTCTCG
GGACCTCGGGACTGGGGCGTGTATGATGGGGATTTCGCTTATGCCGATGAAGACGCCCAC
GAGGCTTCTGTGGAGCACCAGCTTCTTCCGCCATAAGCTCGCCGCCATGATCGCCTCCTC
GTCCTGCTTCTTATAAGAGCCCCTCCTCCGCGCGGCAGCTGTACATATACCTACTTTCTC
GTTTGATTTAGCCCCCCACCGATCGACGAACGACCAAGGCAACTTCTTGAAGCTTTTTTT
CCCTGCGATGGAGCCCGGCCGGCTCATCTTCAACACGTCGGGCTCCGGCAACGGACAGAT
GCTCTTCATGGACTGCGGCGCCGGCGCCGCCGGCATGTTCCATCGAGGTATCATATTCTC
ATCCATTCGTTGTCGTTGGTTGATTCGTTACTAGGTCTTGGCAAGTACTCGTACTAGCTT
TGGTTTAGTGGGGTGGCTGGAGAGTGATTTGTGTACTAATTGGGGTTGCCATGTTTGAGT
GATGAAGGGGTGAGGCCGGTCCTCGGCGGCATGGAAGAAGGGCGCGGCGTGAAGCGGCCC
TTCTTCACCTCGCCGGACGACCTGCTGGAGGAGGAGTACTACGACGAGCAGCTCCCGGAG
AAGAAGCGACGCCTCACCCCGGAGCAGGTGATTAGCTTTTCGGATGATGCATGCTCTGTT
CATCTGAATTGATTCTGACGGTGCATGCGCGGCACGCGTACGTACGTGTATAGGTCCACC
TGCTGGAGAGGAGCTTCGAGGAGGAGAACAAGCTGGAGCCGGAAAGGAAGACGGAGCTGG
CCCGCAAGCTCGGGCTGCAGCCGCGCCAGGTGGCCGTCTGGTTCCAGAACCGCCGCGCCC
GGTGGAAGACAAAGACGCTCGAGCGCGACTTCGACCGCCTCAAGGCGTCCTTCGACGCCC
TCCGCGCCGACCACGACGCCCTCCTCCAGGACAACCACCGGCTCCGGTCACAGGTGAGCA
AAGTCAACCACACGTACGCTTCACCACCGGGCGCCGTGGCTTCCGCCGCTGAGTTTGATC
TGAGAGATCCATCTTTGTGGCGTCAGGTGGTGACGTTGACCGAGAAGATGCAAGAGAAGG
AGGCGCCGGAAGGCTGCTTCGGCGCGGCCGTCGACGCCTCGGAGTCGGAGCAGGCCACGG
CGGAGGCGAAGGCTTCCTTGGCCGACGCCGAAGAGCAAGCCGCGGCAGCGGAGGCGTTCG
AGGTGCAGCAGCAGCAGCAGCAGCAGCTGCATGTGAAGGACGAGGAGAGGCTGAGCCCGG
GGAGCGGCGGGAGCGCGATCCTGGACGCGAGGGACGCGCTGCTCGGAGGCGGCTGCGGCC
TCGCCGGCGTGGTCGACAGCAGCGTGGACTCGTACTGCTTCCCGGGGGGCGCCGGTGCCG
ACGAGTACCACGAGTGCGTGGTGGGCCCCGTGGCGGGCGGGATCCAGTCGGAGGAGGACG
ACGGCGCGGGCAGCGACGAGGGCTGCAGCTACTACCCCGACGACGCCGCCGCCGTCTTCT
TCGCTGCCGCGCAAGGGCAGCACCACCATCACACGGACGATGACGATCAGGACGATGGTC
AGATCAGCTACTGGATGTGGAACTAGCAGGCTAGCTCGCGCATCAAGCGTGCGTGCGTGC
GCTCGCCCCGAAATCAATCAATTTCGTATATTTCGCTCTATATCAGTAAAAGTTCGTGGC
TTTTGTTTTCTCTTCTTGTATGCTTCCCGGTGTAATGTTGGGTCACTACGAAGAAGCTGT
ATGCATATGCATTGTACGAGTTAGGGTAATATAGAGTAGTATGTGGTAAAATCTGTCCTG
ATGTACGAGAAATAAGTGCACGGACTCAAAAGCATTCTTGTATGGCACAGTACATCATGT
CAAATGAGATTTTTTAATCATGTAAGTTGCCTGATTCGGACAAGATGTATTTCCATTATG
CTTTACAATGGAAAGGTGGTTTAATGCCCGGTTCCCCTCAAAAAATGCAAGTCTGATAAG
TTTTGGAAGACCAACCCGTGGCTTACACTTAACATTAAGAGCATCTCTAGCACATCCCCT
ATAATGCCAATCCGTAAAAGCCCCCCTATAATGTCAATCCGTAAAAGCCGCTTACAGTTT
GTGAAAAACGGGTTTTACAAATCGCTGTGGGTGCGGACAGAGGCAGATCTTCCAAAGCGG
ACCCGTATAAAAGCATATTCGCAGATGATGTTATTATACGGGCCGTCAATGCGGGGCTAC
TCGGGCGTCACCGCGCCGATCCATAAACCGAAAAACCACGCAGTAAAACATAGTTGGAAT
TTGACAGCGATTCCGACAAATGAATTCAAAACAATGAAGCATAGTTCACGCGCGAAATGA
GAGCATAGTTTGAAAGACAAACACAAAAGGACTTCATGCATCCTCGTTCTTCACTCTGCA
CCATCGAGTTCATCGTCGCCCCCGAATCCATCGACTCCCCCGAATCCCACGCAACATGAT
CATTTCCCTAGAT