morexGenes - Barley RNA-seq Database

Contig contig_136461
Source Contig contig_136461
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136461 (5835 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_136461

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5618	2	2805 bp	MLOC_5618.2	Available	Available	LOC_Os04g01740.1, FRAME:-2, EVALUE:0.0, 13104.m00087 protein heat shock protein, putative, expressed
CDS Structure of MLOC_5618

Contig Sequence (5835 bp)

>contig_136461 5835 assembly3_WGSMorex_rbca.fasta
GCGGGGGAGGGAGACGGCAGGGAGGAGCCGAGGCCGAGGCCAAGGCCGCGTCCGGCGAGG
GGCGCCGGGCGGAGGGCCGCTCTCGCGGCGGTGGCGGCGGCGCGGGCCAAGGATGCCATT
TCTTTTCTTCTCCTTCTCGGAGCGTGCGGCGGCGTCGTGAGCGTTAAACCCTAGCGGAAC
CTTTAAAGCCCACTCTTATTCCCGGCCCACCGCCAGAGTCAACTTCTGTGCCTACTGGCC
CATTATCGGCCGACAACGCGCCGGGCCGCAATTTGGGGAATGTAAAACCATTTGCTTCAC
CTAAAAAAAAAGTAAAACTATTTACTCCTTCTTTCCAAAAATATTCGTGTTTTTATTCAA
AAATTCATAATACTCTTTGTAAAAAATTCAAAGCATACAATTTAGATTTTGTATCTCATC
CACGGTCTGTCAAAAACTCCGAATTTTCCGGTCTTCATTTTTCTATACTTGCCTGCGATG
AGCGACTTGAGGTGGTGTATGGACTCCTACGCGATCCATTGGATAAAGCTAAAGTATAAT
TTATGCACCAACGAATAATTTATTCACAACGAGTAGTAATGCTATAATATTGGATTCATA
GAATCATAATAATCGTAACACAAACAAACACAAATGACCGACGTCGCACCACGCATCACG
TTTTGTTTGTTCACCACGAGCAAGCAGATAATTTTTTTAGATCCTTTTGTTTCTAGTTAC
CTGTACAATCTTGGGCATTGCTGGAACAAAATCCAACATTTTTGCCTCTCAACTAAGGGA
GAAAAACTTTACATCTTCCAAGTCATACAATGTACTCGGCTACCATGTCAATTCTCCTTA
AAATTCCATTGTCAATGTGTATGTCGCACCTGACAAATTCACAAAGTCAGCACACGTAAA
TTTAGTAATTCACAATAGCTAAATGTAAGCCATCTGGATTTTAAGAAAAGCCTTTGGGTT
TATATTAAGATGACAAATAACCCCATCATCTATCTTAGGGATGTGGGGAGGATGCAAGTT
TGCGGGTAGTCCGCGGTAGGGAGGTTGAAGAAAGGATCTGGCTGTTCGTTTTGGAGGGAA
AGATTGGAAGAAGGCATGGGAATTTCTGGATGTTCGTTTTGCATCCAATGGCGGGAAAGA
ATCGACCGACTCAAATTACCTTTTCAGTAAACTTTCTTCAGCTTCAACTGTCTGGTTAAG
TGACAGCGGCTAAGTGCTCACAGTCACATCTCACATTGGACTCTGAATTGGATGGCACGC
AATTTCAGCTATAAAACACACGGAAACTCAGTACTTGTCACAGATCCTTTGCTGCCATTT
CTTTTTGAAGTAACTCGATACTTGTCACACTGAAACAACACAACATCTCACAGATAGTGA
GAACCCAAGAAAACTCCTCTCTTTTTTCAGTTTCAAAACATCAGAGCAGAGCACAAAAAG
TTTCAGACTTAAACTCTTCTTCAAAATTCCCTTGATTTTTACATCCCAACACCCTCAAGA
CACGAAGTGAGTAATAGATTTCAATCTAAGACATCACAAGAACAAAAAAAAATGTTTCGT
CGGACTTCTACTCCCTTGTTGAGATCAGACTTCTACTTCCTCCGTTACTCAATATAAGTC
TTATGAAGATTTAACTATAAAACTACATACAGAGCAAAATAAATATATTTATATTTTAAA
ATATATTAATACCTGAAAGGGAACAAACTTATAGAGTACCTGAAAACTCTAAAAAAAACT
TATAGTTAGAAATCAAGGGATACTAGTGTGTATCACATAAGAACAGTGTTTCCCCCTTGT
TGAGAAATCGACCACAGGCGAAGAAACTTACTACTGTCATCACCAGCCTGAAGCAAGACA
CATCTCAAAGATCGGCTCCTCAAAGATAGATGCGATGCAAATTCAATTCAGGCACAAACA
CAAGAACTTTCTTTAGAAAAACTTACTTATGTCTAACTCGAATTTGTTTCAAAGGGCAGC
TTCAGCTCCAAAACATCACCGAAGAGCACAAAAAGTTTCAGACCCAAACCTTTCTCTTGT
TCTTCAGAGTCTGCCCAGAAATGGGAACAAACTTCCTTCACTTCTTACATTCCACAGTAC
ATCGCCAAACGACACCAAATGAGTGAAACACTTACATTTGACCCCGAGAATCAAACACGG
CGACACTGGCACTCTAATAACAACTTCTAACTGGACACGCAACGATCAAACGACCACCAG
AACTCAACTCTAACCATGGGCAGACACACGACAGACAGACAGACTCTGTTTGTTTCATCT
TCTTCAGGTTCATGTTCAGGTTCAGTCGACCTCCTCCATCTTGCTCTCCTCGGCGCCCTC
CTCCTCCAACGAGGGCATGTCGGCGTCCTCCTCCTCGGCATCGGCCTGATCATCGATGTT
GAGTCCGAGCTTGAGCATGCGGTGGATCCTGGCGGCGAAGGTGTTGGGGTCGTCGAGGCT
GAAGCCGGAGGTGAGCAGGGCCGTCTCGAAGAGCAGCAAGACGAGGTCCTTGACGGACTT
GTCGTTCTTGTCGGCGTCGGCGCGCTTGCGGAGCTCCTCCATGATGCCGTTCTCCGGGTT
GATCTCCATGGTCTTCTTGGAGGACATGTAGGCGCCCATGCTGCTGTCACGGAGGGCCTG
CGCCTTCATGATCCGCTCCATGTTGGCCGTCCACCCGTACTCGCCGGTGACGAGGCAGCA
GGGCGAGTCGACGATGCGGTCGGAGACGACCACCTTCTCCACCCGGTCGCCGAGGATGTC
CTTGATGGTCTTGCAGAGGCCCTCGAACGCGGCCTTCTTTTCCTCCTTGCGCTTCTTCTC
TTCCTCTGTCTCCTCGTCGAGCTTGAGGCCCTCCTTGGTGGCGGAGACGAGCTTCTTGCC
GTCGTACTCCTTGAGCTGGCCGACGGCGTACTCGTCGATGGCGTCCACCATGAAGAGCAC
CTCGTAGCCGCGCTTCTTGAGGCGCTCGAGGAAGGGCGAGTTCTCGACGGCCTTGCGGCT
CTCGCCGGTGATGTAGTAGATGTCCTTCTGCCCCTCCTTCATCCGGGTGACGTAGTCCTT
GAGGCTGGTGAGCTCGTCGCCGCTCTTCGTCGAGTGGTACCGGAGCAGGTCGGCGAGCTT
GGCGCGGTTCTGCGAGTCCTCATGCACGCCCAGCTTGAGGTTCTTGGAGAAGGCCTCGTA
GAACTTGGCGTAGTCCTCCTTGCTGCTCTCGGCGATCTCGAAGAAGAGCTCGATGCACTT
CTTGACGAGGTTCTTGCGGATGACCTTGAGGATCTTGTTCTGCTGCAGCGTCTCCCGGGA
GATGTTGAGGGGCAGGTCGTCCGAGTCGACGACGCCCTTGACGAATCCCAGCCACTCCGG
GATGAGCTCCTCGCAGTTGTCCATGATGAAGACGCGGCGCACGTAGAGCTTGATGTTGTT
CATCTTCTTGCGGGTGTCGAAGAGGTCGAAGGGGGCGCGGCGGGGCACGAAGAGCACCGC
CTTGAACTCCAGCTGCCCCTCCACCGAGAAGTGCTTCACGGCGAGGTGCTCCTCCCAGTC
GTTGGTGATGCTCTTGTAGAAGGACGCGTACTCGTCCTTGCTGATCTCCTCCGGCTTGCG
CAGCCAGATGGGCTTCTGCTTATTGATCTGCACCCACTCGTGGCTCACCTCCTTCACCTT
CTTCTTCTTCTTTTCGTTGTCCTTCTTCTCGGAGTCGTCGTCGACCTCCTCGACCTCGCC
CTCCTTCTTGTCCGAGGCAGAGGCATCTTCGTCTTCGTCGTCGCTGATCTCCTTCTCGGT
GGTCTTCTCGGTCCAGAGGTAGATGGGGTAGCTGATGAACTCCGAGTGCTTCTTGACGAG
GTCCTTGAGGCGGCGCTCCTCCAGGTACTCGAGCTGGTCATCCTTGAGGAAGAGCGTGAT
CTTGGTGCCGCGGCCGAGCCGCTCGCCCTCCGTGTCAAGGGTGACGGTGAAGGATCCGCC
CGCCTGCGACTCCCACACGTACTGCTCGTCGTCGTTGTGCTTGGTGGTGACCACGACCTT
CTCGGCGACGAGGTAGGCCGAGTAGAAGCCGACCCCGAACTGGCCGATCATGCTCACGTC
CGCCCCGGCCTGCAGCGCCTCCATGAACTCCTTGGTGCCGGAGCGGGCGATGGTGCCCAG
GTTGTTGACAAGGTCGGACTTTGTCATGCCGACGCCGCTGTCGATGATGGAGAGCGTCTT
GGTGGCCTTGTCGGGGACGATGCGGATGAAGAGCTCCGGCTGCGCGTCGAGCTTGCTCTT
GTCGGTCAGACTCTCGAACCGGATCTTGTCAAGCGCCTGCAAGCATAGCAATCAAAGAAG
CATTCGGGCGCGCGTGAGCAACCAAATCATCTCATCTGTGACGACGAAACAACAAGGCAG
ACAAGCAGAGGAATCAGAGCAGAGGAGGGAAGAAGAAGGCACGTACGTCAGATGAGTTGG
AGATGAGCTCGCGGAGGAAGATCTCCTTGTTGGAGTAGAAGGTGTTGATGATGAGCGAGA
GCAGCTGGTTGATCTCCGCCTGGAACGCGAAGGTCTCCGCCTCCGCCCCCGCGCCGCCGC
CCATCTGCACGTCCGACGCCATGGCTTTCCGCTGCTGCTACTTCTCCAAGGGTGAAGATG
GATTGGGGCTGGTGGTTCCTCGCTGCGGTGGTGATCGCGGTGCTTGCTTTTTGCTTGTTG
CGCTGACAGAAGAGATTTGGGAACAGACAGACAGATGGACGAACAGGTGGCGACCGGGAT
GATTTATAGGGTGTGGGTGGTGGCTTCGCCGGTGTTCTGGTGCCTTCGGTGGGTCGCGGG
CGCGGGCGCGGGCGCGAGCTCGCTGTGAGCGGCGGGAGTTTGGGCGCGCGTTCGTGGGGG
TTCCCGAAGGTTCGTGGGGCTTCTTCTTCTTCTCTCTCCTCCCGCTCCGTTCCTTTGCGC
CGAGGCGGTTCGCCTTGGCCTGCCTAGCGGTGTCCCGAAGCTTCCACGATTACCTTTTTT
TTCTCCTGAGAGAGACATACAGCAGACCTTAGCAAAAACAACAACGATTCCATGCACAAC
GGCAATCCAGTAATCCAGTCCGCTGGTCCGCTCGTGGGGATATGGGCTGCATGCACGAAC
GTACAGCCAGTGCCCCACTACTGTCGGTCTTTGTCCTCGTATTAATCTGTATATCATTTT
TTCACTGTGTCCCTCCCCACCGGTATTCCATGTTTACTCGTAGGCCCCACTTCTCATCGC
CAGACGTGTCCTCCCCTCTCCCCCCCACCACCGCCCATTATCACCCTCTATCTCGTTTTT
CTCTATCCGGTCACAAGAGGAACACCACCTAGAGCAGCTCGTAATCCCCATTCTTTCGAT
CCAGCTCCACTCCGGAGAAGCAGCTTAGTGCATCAGCCCCGTGACGAAGACGCGAAGCAC
CCCGTTGGATTACCCGCCCCCGGCGAGTCTTAGCTGCTACACAGGGGAAGGAGGGAGCTC
AATCATGGATCTGGTCGATGAAAGCATTGAATCAGCCCCATCTCTCCAGGTTTTGAACTC
CACACACACACTTCATCCCAATCCCCCTTTTTTTGACCTGTTGTGTTCCGTATTATCCCG
TCCCTCCTAATTGATTCACAACTTGTACGCAGCCTGTTCGGTTTTTGGATGTTGAGCTTG
GTGGGGCTGATATTCGAGACGAATTCCTGGATCCAGATATCTGTGGTATAGACACTTCCT
CTAACCACAGATGCCATCACAAACTTAATCCAGCAAGAAAGGTTGCTTACGCAAGCGCGG
CCACTGGGAGGAGGTTTCTTGGATGCCCTCACCATGTGAGCTTTTGTCTTGTGCTGTTTC
ATTTAGTTTGTTATT