Map Locations of contig_136420 (9349 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_136420

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5589 6 3275 bp AK370650 Available Available None





CDS Structure of MLOC_5589






Contig Sequence (9349 bp)

>contig_136420 9349 assembly3_WGSMorex_rbca.fasta
GGATTTCATTAGAAGACTACATACGGGGCAAAATGAGTGAATCTACACTTTAGAATATGT
CTATGTACATCCGTATGTANTTTATAATGCAATCTCTAAAAGGTCTTATATTTAGGAACG
GAGGGAGTATATAACATGTAATATTGTCTCCGCAATTCCAATGCAATTTCTTGCATTTGC
ATTTTGCTCTACTTATGAGACTCCTCATCATTCAGCCCTACAATAGATACTAAAAAAACT
ATTTGGCCAGAGCAAGTGCTACACACACAATCAGTAACATAGGAAGTTACAAAACCTGAC
AAAATCTGGAGGAACGCAAAATAAGAGTGATGCTAATATCATGATGTCCAGAGAATATAA
TATCTTCCGCTGGATCACCGGAATACAACAAGATACCTGGATATAATTTTCATAGCACCA
TTGAGTCGAGAAGTCTGTTTCTCTCCATGAGTTATAAACCTGAAATGATATTGAAGAAAT
TAGCGCTTTACAGCTCAAATCTAATAAACATTATGAATTCTGATAAATTACAAGGGAAAG
AAAGAATACATTGAGTAATGCTATGTGGTCCCCAACGTTCCCAGTGTGGAAGTTCAGCCT
TGCATTATCTGCATGAACCTGTTTGTCTTTCGGACGGTAGAATATAGAATTGCCGATCGA
CAACATTGACGCAATGGACATGACCTCATCAGAACACTTGTATTTCTCCGAAGCTACTAT
CATCTTTGACAACATGGGATCTAGTGGAAACTCTGCCATTCGTCTTCCAGTCTTGGTCAA
CTCTCCACGACTGTTGAGTGCACTGAGAGCAAAAAGTTGTTCCAGGGCCTTCAACAAGGC
CTCTGAAGGAGGTGGGTCCATAAAATCAAAATTAACCAAGTCATGAATACCAAGACTCTT
AAGTGTAAGAACAACATTTGCAAGGTTGGTTCTTTGTATCTCTGGAACAGTATTATCCTC
AAGATCATGCATGTAGTTATAACTTGTGTACAGACGGAAACATTTTCCTGGTCCTGTCCG
TCCAGATCTTCCTGCCCTCTGGTTTGCTGATGCCTTTGAGATGGGATTGATAAGCAGGGA
TTCCATCCCGGTACGAGGGTTGTATGACTTGATCTTACAAAAACCTGGGTCAATAACATA
TTTTATACCATCAATGGTTAGTGAAGTCTCTGCTATATTAGTGGCCAGGACCACTTTCCG
AGAACCCTCAGGGGTTGTTTCAAAGATCTTCGCTTGAAGTTCAGTAGGCAGATTTGCATA
AATAGGGCATATATTTAGCTCTGGAATCTTTGTGCCTAAACCCCTTGTTTTGTGTTTAAG
GATTTCATCAACTGTTTCAATTTCTTCCTGTCCTGTAAGGAACACTAGGATATCACCAGG
GGGCTGTGTCACATGTATCTGTAAAATAGTGACAATGGCAGCATCAATATAATCTGCTTC
TGGAGCTTTTGTATAATGAACTTCAACAGGGTATCGCCTCCCAGGAATCTTGAAAATAGG
AGCTGAATCAAAGTAGTCGCTAAATTTTTCAGCGTCAAGGGTTGCACTTGAAATAAGCAA
CTTCAGGTCTGGACGAAACCTAGCAATGTCCTGCAGACATAGTATTACGTATATGAGGAA
TTAAATGGGTGTCCACAAATCTGATGGAAGAGCATACCAAAGTGATACGAGCCAGCTAAC
CTTAACCAAACCAAACAAGATATCAGTAGACAGCGTGCGCTCATGAGCCTCATCAACCAT
GACAACACTTAACAAAAAAATAAACAGATATAAGTGGTGCATTCAATAGTACAACTCAAG
TAAAGAAAATGATTTGCTAACGATTACCTGTAGCCCGCCAAATCTGGTTCTCCGAGAAAC
TCCCTCAAAAGCATTCCATCAGTCATGTATTTAATCATTGTTTTCTCTGAGGTGCAATCC
TCAAACCTTATGGAGTAACCAACCTGCAGGGTGGCACTAAAGATTACAATTTCATATAAT
GTAATGGAAGATCCAACGCATAAACACATTCCAGAATTTGATATTATTATATGACTATGT
TTATGAACAGAACAAACCTCGTGTCCCAATTTCACACCCATCTCTTGAGACACCCTTGCT
GCAACGCTCATGGCTGCCACTCGACGAGGTTGTGTACAAGCAACCTGCAAATTTTAAAAA
TTACCCAAATTTTGACAGATCCATAAATTCATTGTAACTGCAATCATTAAGGCTAAACAT
AATCGCACTTCATAGAGCAAAACCATTAATGTGTAACAAAAGAAAAAATGCAGATTTTTT
CACGACGCATTAGACCAAAACAAAAAAACTATTCCTGTAAGCCATATGTGCATTAACAGA
CAGTAATAGTAATAAAAAAAGCAATGCTACTAATAATAGAAAGATTAATGCTGTGTGGCA
TACCTTTCCTCTTGCTGTATATCCAGCTTCATGAAGATATTGAGGTATTTGTGTTGTTTT
ACCAGAGCCGGTTTCTCCCACTATGACAATAACCTGCAAGCAGCACATGCCCACAAATCA
ACGCGAGAACAAATGGACGTAATTAGATCATGTCATCATATACAAATAGTTACAAAGGGA
AGTGGGTATTTCTTTTATAAATAGAGTTCAAATTTGGGGAATTGTGAAAGACTGAAAGGG
CATTGAGCAAAGCATGAATGTTGATTGCTGAATCCTAGCACGTAAGTGTTCCACAGTCCA
CAATGAACACTAATATCACAAACCTGATATTCATCAACAGCCTTGAGCAGGTCATCTCTG
AATTTATAGATTGGAAGGGTTTTCCGCTCATCCTAGTTCAAAAAGGAAGCCAGTTCAAAT
ACAAAGATAACTATTAGGGACTATAATTATGATTCAGCTTTTATGAAGAGGATGAGTAGG
TATATCTGTTTGTAACAAATAAGTTCATAATCTGCTCACACACCTGAAGTTCTCTTTTTA
AAATATCTTTTGCATCAATGGTCTCTTGGTCTGAATCATCTTCAAACTACAACATAAGAA
AGTTCAGTAAAAGATATCTTAAAGCAATCAAATTAGGAGAGTAAATAAAGTAACTAACTG
ATTACCTGTGTTCCTTCTATGACCGATGATTTTACAAAATCAATTTGATCATCAAATACA
TACCTAAGAAGTTTAAAAAGTAATATGAGTACAAAACAACTGTTGAACAACGGTGTTGTC
AAGACTACACAAAATTCATCTGTCCAACAAAGGTGCAATCAAAGGCTATAGAGAATTCAT
AGTTTCAGTACTACGGCATGTTTAGACAAGGGGTACTTTTGTGTGAGCTTCAGTATTTAG
CTAAAAAGCACGTACACGCCAAAAATTGCTGATTCGCCGTCCTGGGATGGCAGGATACAT
GTGTCCTGCAGTATCCCTAATTTTCAAAAAAATATTGAAAAGAAAAAAATAAAGGGACAC
GGTGGCATACATACGTGACACGTCTAGGACACGGCTTGGCTTAAAAACAGCCTCGGCCCA
ATACCTAACCCCATTTTGCAGGGGTCGCACACAAGCTCTCCGCATAAGAACGAGCTTCAC
CTAGAAAAAACATAAGAACAAGCTGCTCCCAGCCTCCCAGGCAGCAGTGAACACGCCACC
GCCGGCGGCAACGCCTGGACTCGACCGGTTACCGCTACCCCCAGCACCAGCAGCCTCTCC
TCCCAACGCAGCGCCAGCAGCCTCCTCAAAACGGCAGGTAACCCAAATCCCAAAACCCAG
CAGCCTCTCCTCAACCTCTTTATCTCTTTTATTCTGTTTTTCTTCCATTGAGCTGCTGCT
GCTGTAGTGCTGTTTGCTACCCATGTTGTGCTGCTCTTTGAATGCTTGTGCAGCTTGCTG
TTAGGTAGCATGGCATCTGGGAGCGGCACAGCCGGTACCGGTAGCCAATTGTCCGTGGGT
GAGAGGGAAGGGCAGCCTGGTCCTGGTGCTGTAGATCCCAAGTATCCTTGTGGGCTTATG
TGGAGAAGCTTACACCTACATCCAGTAGCTGTGGAGGCGACACAAAGTTCCGTTGCAATT
TCTGTAATAAAACTAACCCAGGCAGTTATTCAAGAGTGAGGCCTTATCTTCTTCAGATAA
CAAAGAAAGATGTAGCAACCTGTGACAAAGTTCATGTTTGATGTGTCATGGAAGGCCTCC
AGTAGCTATAGAGGCAACACGGAGTTTTGTCTTCAGATTATTCTCTAACACTAGACTAGC
ATTGATGTGCTATGCAAGATGCAACTTGCAAAAATGACATGGGAGGATCAATCAAGCATA
CACCAAATGGGGCAGTATTCTGATCTCTTTCTCTCTTGTTTTTTTTGTCTTCACTCTATA
TTACATGGCATACTTTTATTTTATTTTATTTTATATGTGCTCGCCATATCGTTGTGTCTC
CATCCCCGTATCCATGCTTTTTAGGTATTTAGTTCAAGTTTTAATTAACTAGCAAAGCTC
CCTAAAGAAATACCTCTAATCCAAACAATTCCTTACAGGGATCCTTTTATACGGAACAAA
ATTTCTGGCCAGACAATCCTCAGCAAGTGACATGCAGTTGAGTGCTGATTAATTACATGG
CTTGTCACAATTCTAACCGGAAAGATGGAGTGATGGACTCTCAGAAACAGCAGAAAAGTA
AACTTTGCTGATGAACAATTCATAAGAAGAATAACAAACTTACTGGTTTTCCTTAGAATA
CAGCAGAGAAGTAAACTTTGCTAGTGAACAATTCATAATAAGAAGAATAAAAAACTTACT
GGTACTCATTAGAAGACCGCTTTCTATCTTTCGATCCAAATTCCAGCTTAGACTTTCCTG
AAAGAAGTCGACCAATTTTAAATATACAACAAAGAGCAATACCGATTTCCTGTGGATAAA
CCAAGTAAATGCTATTACCTATTTGATGTTCTTCCCATGCTTCCTGTTCAGCGAAAGGAT
TCATTTTATCTTTGGCCTCAGGATCTCTGCTTGTCCAGCAAATTCAAAAATCAATATATC
TATACAAGTTCGGGGAAGTTAACACACTGTCAAACAGAAGGACTCGCAGATACATACTTG
TAACGCTGCATTGCTACCGAGAATCTCTTTTCTTGATTAACACCTTCACCCATGTCATAA
GCTTCAGGCATTTTGTACTGAAAATCACGTGATTGACGAACTGAGGACATTGGCATCAAG
AGATCATAGTGTCATCATTACTCTGCAATATTCTCAAGGGGGGGAACATACCTCAGCAAC
ATCATCTGCACTCTCAACATGCTGCTTAACAAGATCAAAAATCTTCTTCTTGTATCTGCA
CACATAAACCGTTGAATGCCCAGGTTTATTTGAAATGCACTGCATAAAAGCCTATGTGTA
CATGCATCTAACTAGAAGAGAATCTGTAGCATAATTCTGCATATCCTCACTCCTGGGTAC
TCCCTCCTCGGTACTAAATCAGTGACAACTAATATTGAACGGAGGGAGTACAAAGTTATC
AGTAGAGCGGCACTTTATGGGACTCGGTTAGAATCAGCACCTGAAGTCATTTTTTTCTGC
TTCGGTCAGTGTCACATCCTGAAAAAGGTATTCATGATCGAGAATTTCGTCCCTGCAGTT
ACCCCAAACAGTAAGTTAATGTATGTACCAGCTGAACATATAGACAACATCACGAACAAC
AATATACTTGTATAGAAATTCTGTTGTACTGACCGAATCTCATCAATTTTTTTATCCCTT
CGCTTTTGCAAGTACGCTTGCCTTGAAAAATCTCTGCACATTTGCATTGAAAGGAAAGTT
AATATTCCAGAACTCCTGACAGATCTTTCCAATAAAACAGCTTGATTTTCCTACATCCAA
TAAGATGACTCAAAGTAACAAACTACTAAATGCAAGCAAAAGGCTTGACATTTCATTGAA
TTTTATCTTTATATTATATGTTCTCTTTTCTGTAATGTCACCCACTTGCGTTCAAGATAA
AAGCTTAAAATATGCAAGAGAAAAATGTGGTCAGCTGCAAAAAACCTTTCCCAGCAGGGT
ATAATCATCCAAAATAAGCAGCGCCGTTGTCATTTGCATACATTAGCACCAAAATGGTAC
ATGTAAATGCAATTCAATTTTCAAGGAAAAGCACGGTCCGCCTTCTATGTACACCGTCAA
TTCATTCCAAAATAAATTCTACAAGTAACAGATAAATGTGTTGAACTCTATATAAACTTT
ACCTATACATCACAAGGGTGTTTATTCAGTTACTATTCTGCTACTCTAGTCATAGCCGAA
AACATTACTGTAGTCAAGAATAAAATTGTTTCCACGTACGACTTCTTCAAATGTTCAGAT
GTGAGTACAGTATTTAGCACAAACCTACAGTACAACAATGGAAAACCAACAGTCCAGGGT
GCTCAGTTCGACAAGCTAGCAACAAGTTCATGCAGATATATACATGATGGTTGCTTTCTT
TCTACTTTTTTCCCTCAGTTTTCCTCTTGGATAATGACTGGATATGGTACTGTTTGAAGT
GGCCAGGTTTTTCACCAGTATCTTGGGAAAATGGTTTTTCATCAGTATCATGGGGCAAAT
AAAACTAATTTCCTACGTACATCGACAGAAGTAAAAGAAATTATAATTAAAAAAGTACAA
CAACCAACTGCAACAGGAATAACCTCAGATCTGAAGTGTCATTCTTTTCCAATGCTTGTG
ATCTTCTGGTAAGCTCCTCTGTCAACAATCTCCAATGAATAAATTACAATGATAATAATG
AACCAAATTAGTAGAGTATACATGTTCAGGTAGGCATACCTTGTTCTTCCTTAGATAACT
GTCGCTCCATCAACTGTAGACGGAAATCATTCAATAACATCAGCTCAAATAACTATAACA
AGATTTAAAAACATAGTACAACTAGAAGACATGATTTGCTGGAGTTTAGAAACATGCTAT
GTGCTAGATATATAAAGTAGGTAGGTGATGCAAGGAAATACTACCAAAGAGGTGCTAATC
TACGTATATTGGCATGCAGGTCAACTCAAAGAACTACACTTCTTAGGTATCAACATTCCA
AAAACCGTACTTCTGAGGACGTGAGTCATGGCTCACCGATCAATGACACAATTCCTTTGT
AACCATTTCAGAAAATAAAATCGGCAACAAAATTTCATCAGTGTAATTAACCAGTGCGGT
CGCAATTTTCAGTTCATAGAAGTGTGGTTTTATACTTTTATGAATCGATAATATGGAGAA
GTGTGACTTTGTGAAAGTGTAAAACTACTCCTTTAAAATGTAGTTACTTGATTGATAGTT
TGAGAAGAATTTTGTAGTTTTAAGAAAGTAACTCTAAGATGTACTCTAACAAACATGTCA
CTACAATCAGATCTTCTCTCGTAGTGAATATATAACAAGCCACAAATCATTTAAGATTCC
TTCAGAACGAAATGACTTGTTTTACAAAACAAAAAAATGGCATCAAACACAAAAAGGAGA
AGCCATTCACCAACTATATTTTTGTTCAGCACTCCATTTCATATGAAGAACATGTGCCAG
CAGAATACTTCAAAGTCAACCAGGAACAGTAGGAGTTGGTTATAACTTGATGTATTATTT
AGTTGTTAGAAAAAAGGAGGTTCCTCTCATTGGGAATAAATTAAGTGATAGCAAACATAG
AGACGAAATGAATATCAGCTTGCAAGACAATCACCTTTCGAGTGTGCACTGCATCTCTTT
CTCTCATGTTCTTCTCTAGCTGTGCCCTTTCCTGCTGATCCCTTAAAATTTCTTGTTCTT
CCTACAAGGCATCACATGCTATAATGGATTCAAAAGCACATTTTAATTGACCATTCCGTA
CATTTTTTTTATATACACAACAAAAACAGATTCCTCGAAAGAAGGGCATACATCCAGAGT
GTCGTTGCCGTCTTCATCATCCACTTCTTCTGTTCTCCTTCGTACACTCCTCTCAGAAAT
ATGCGCTGCTGTTTCCTGCAACGCGACATTATCAATTTGAATCACGGCATGTGAAAGCGA
CACGATAAAAGGGTGGCTACCACGCCGTCTCACATCATCATCCTTCCCATCGTCTTGGTC
TTGAGTCTTCCTCCTAAAATGCTTCCTGCTCTTAGAGGATGCGCTCGCCGAGCTCGTCGT
GTGGTTGTCAATCTCATCATCATCCTCATCGGCCAACAGCTTGTAGGTGCTTTGTTTCTT
GACAAGCTTTGCTGCATCCCTTTCCTGTTTCTGGTAATTCTGCGGCAAGAAAGGAAAAGC
ATATATATGCATAGCATTAAAATCATCGAAGACAAAGCCGCAACACAGTTGTCGACACAA
AGGGATTGGTCAGCAGAGGAGGTGGACCAAATCTTACACTGATGCTCTTGCCCTTGCGGG
GGACCTTGGCGTAGATGTCGGCGGCGAAGCTGGTCGTCTCGGCGGACGAGGAGAAGCCGT
AGTCGACGAGCTTCCCCACGAGATCGCCGGCGGAAGAGCAGTCCTTGGCTGAGCACGGAC
AGATTTGCGGACCCAGATTAGGATCATCATCATCAGAGAAGAAGAAACCGAAGGAGCCCC
GCGGCAAAGCAGAGTAAAACCGGCTGTACCTAGACCGATGACGTAGTGCACGAGGACGCT
CGTCGAGAAACCCTGGATAGACATGAGCTTGTCCGAGACCCAGTCCCTGAGCTGCTTGTC
GCTCGCCATCACCGCGGAGGGGTTGGGGGTTGAAGTGGGGGCGGAGGCGGAGGAAGTGAC
TGTAGGATAGGCGGAGGCGCCCGGGGCAGAGGGAGTGCGGCGGCGCCCGGCCTGGATGGT
CTGGACGTCGGGGAGGAGGGGCGGCGGATTCCGGCGACCGGAGAGGTGCGGGGGGCGTGG
CCGGCGGCGCGTCCGGGAACCCTAGCTAGAGAGGAGGAGTCGTGCTGGTGCGTCGCACGG
GACACGGGAGAGAGATTGAGCGGGCCATGACGGTGCTCCAGGTCCAGGAGCTACACAGCC
GTTGGATCTGAATCCAAAGGCCACCAGAGCTAGCTTGCCCAAATTTGATAACACTAGCAC
AAATGTCCTTCCGTTGCAACGGGAAATAAGTATGATGTACCATTTTTTGAAATAAACAAT
GTAAATGATCCTTCCCTGAAATTTAAGACGTACACTAAAATAATATAGAATACAAACTAA
AAAGAACCTAAAAGTTTGGATTTTTGGTGCATATGAATGAAGGCATGATAATCCATGTGC
GTTGATAAAAGAATAAATTTTCAAATTTGCATTTACTACATGTTTTTTAGGAAAATATAA
CCATGATAGTTGATAGGTTGGTGCGATCATTAGACGGAGAAGACTACTGTTAGAGCATAT
ATCTCCCTATGTGGTTTTGATCATTGTCGTATTACTTCGTATAATATAT