morexGenes - Barley RNA-seq Database

Contig contig_136407
Source Contig contig_136407
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136407 (7748 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_136407

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5583	3	4977 bp	MLOC_5583.3	Available	Available	LOC_Os04g53496.1, FRAME:+3, EVALUE:0.0, 13104.m05508 protein NBS-LRR disease resistance protein, putative
CDS Structure of MLOC_5583

Contig Sequence (7748 bp)

>contig_136407 7748 assembly3_WGSMorex_rbca.fasta
GGGCACACAAGAGACTTTTTATTATTTGGTTGCAGGATTGTTTGAGAGAGACCATCTTCA
TCCTACTCCTCCTACGGATTGATAAACCTTAGGTCATCCACTTGAGGGAGATTTGCTACT
GTCATACAATACTCTGCGCTTGGAGGCCCAACNNNNNNNNNNNNNAACAAGTTGTGTAGT
AGACATGAGGCGACAACTGCAACTCATGCTCCGGCAGCTCCTCCGGCTTCTCTACATCGT
CCTCCGATTCAAGTTCAGTGAAAAGAGCATCGATCACCGCCAGCTTCTGCCGAATGAAGC
GTCGGTTGGCCTCCATATAGGCATCATACTGGATGGACTCCAGCTCCGCCATCTCCTCCG
CTTGAGCGACGATGAACTCCGCCTGCACGTGCTCAATGTTGAAGCCCGGAGCCGATGCCA
CCTCCTGCTCCGACAGCTCTGCCTCCATCGAAGCGGGCTGCAACTCCTCTCCCTCCTTCC
CGTTCGCCTACTCCTCCTTCACCGGAGCGGGCAACATATACTCTCCCCTCCTTCGCCTGC
GCCTCCTCCTTCTCTTCCTCCGTCTCCGACAAGTTCAATGGCAGCCCGAAAGCAATGCGA
GCGGCGTGCCTCGCCCAAATCTTCTGCTTTATTTGGTATCGGCGCTCCGTCATGAGCATG
GTGTAGGTGGTGATCTTTGCTCGGACCATGGCACCACCGAAGAGTGTGGGAAGAGCACCA
GAGCGAGAGAGAGGAGATGAATGGGCTCGGGCTGGCGACGCAGATAGGAAGGAGGTGTGT
GGGATAGGGTCAGGGGGAGCTAGTCAACTAAAATAGCCGAATTTGCCTGGGACGATGAGC
CGGACCGGCGTCACGCACCTCACCTGAGGAGGCGTCCGTCGTACCGCCAGATTTCCGGGT
GATTACCCATGGGTCCATGCCACCAGACCGTCATAGCGGACGCGCGAGCACCCCCATATC
CGACTAATATTTGGGCTGAATATGAGGGGTGACGGTCAGCCCGGCCATTTGAGGCGCATT
TAGGGCGCCCGTCTAGGTCGCTTTTCTATGACTGGTAAGGCTATCTGGGCGTTCGAGACG
GCTTTGAAAGGTCTGGTTATGGAGGGGGCAACAAGGGCACCGTAGAGGGGGACCGTATCC
CTTGCCTTACAAAGAGCCCATAATGTGTATGCTATTTTCAACGTTCTTGGCCGAGATCAC
CACCATCATCATAAACTCATTGAGATTCCTCGAACTAGTCGGGTTCCTCTCTATGCATGG
TAATCCTATATATTCCTATATATTTTCTACATATAAAGAAAAGAGCAACACATTACTTGG
TCATGAAGCTGGGTATATCGTGTATTTTAGTGTTATGTGTTCAAGACACCTGGTGTGTTG
ACGCGACTGCCTCTCAACTATAAATTGCACGCATTCTCTTCAATATCGATGTTAGGATCG
ACGTAAAACCCTAGATACCTCCAACGGGGCGGCTGGGCCGACCCATCTCCGCTTTCTTTG
TAAAACAAAAATGACACCGCCGCAGGGGATCGAATTAGCAAGATACCCATCAATCTACAT
TGGGGTAACCACCGCGGCACCACACCACCTTCCTTGATATGATATGTGAGTTTGCATCTC
GTTGCCTCTTTTCTTATTTTCTCTTTCCTTCTTCTTTTTTCTTTTTTTCCTTTTTTTGCA
TTTTACGTTCTGTTTATTCTTTTCTTTTTCATCTTTTCTTCCTCGCTCGATGATTTTCTT
TCAAATTCTTGAATTAATTTTCTTCAAATCAAAGAAACTTCTTTTCAAATTCTATGAACT
TTTTTTCAATTTTGATGAACTTTTTTCAATTTTGAAAAACTTTTTTTCATATTCGATGAA
CTTTTCTTTCAAATTTTATGAACATCTTTTAAATTTTATGAACTTTTTTTCATATTTGAT
GATTTTTGTTTAAAAATTGATTAGCTTTTTTTTCAAATTCAATAAACGATTTTCAAAACA
GCTAAACTTTTTATCAAAATTGATGATCCCTTCTCAAATTCGATGAACGTTTTTCAAAAT
CACTGAACTTTGTATCAAAATCGTTGAACCTTTCTTAAATTTGACGAACGTTCTTAAAAT
TTTATTATTTTTTCTTTTCAAAATCTGTGAACATGTTTCAAATTTGATGAACTTTTTTGC
AAAATCGATGAACCTTTTACAGGTTTGTGAACTCCTCTTTCAAAATGAAGAGCTGTTTTT
CAAAATCACGATCTTATTTCCAAATAATTAAAAAAAATAAGCGATAAACTAGATGAATGG
TTCGTAATTTTGCAAGCTTTTGCGTTAGCTAGTCTGTATAGGAGGTCCCGGTTTTCCGTA
TATGTAAAAAATGTCGAGTGACCTGGGCTAGTATATTTGGGCTTTCCACTGGGCTTCATG
TCCCGGACCCAATGCTGACCCGTCTCTGCCCTCAGCGGCGACAAGGTCACACAACCAACC
GAGGGCCGCCGCCATGGCTTCGCCGGAGACCAGAAAAAAAGTAGCCGGCGACGGCAGCTA
GGACCTCTACCTCCGCCCGCTGTCTCTCGCCGAAGCCGGTTCTTCTCCGTAAGTGGCACG
CATCTCCCTCCAGCCCCCTATCCCCCCTTCCCTGCCGGTCCTGTCCTGTGGACCCAAATG
CGTTGCTGGATGCGTTCGCGCGAAGGCGAGGAGGTTGTTGTGGCTTACTCATGTGATCTT
ACAGTCCCCCTGCAGCATTTGGGAAGAGCCACAAGCAATACTTCTGATTGTGATGTTTCA
CCCAGTCAAATATCATACTCGAGTAGAGCCATAAGCAACAAGGAAAACATCTCGGACAAA
TTTATGGCTGCTTCACATCACCTCCTTATCTCGGTGTCTTTTAGGAGTACCTCTGGAGAC
TACAAGATTTGTGTGTCATTTGCAGGTGGCTTTGTGCTCTGCGGAACAGCAAGAGGGAAA
CCGGAAAAGCGAGAAAAGGGAGAAGGAAACCATCTCAGAGAGAAAAGCCGATGCCTTATT
AGGTAACCTTTGATCAGCTCGCCGCTGCCGGTGCCGGATTCCTTGCGTACTAATTCCTTT
CCTTGTTGTTCACAAAAGGGATTGCTATGGGAGGACAGCAAGCATATACATGCCTTTCTT
CACCCCAGAAAAACAGAATGCGTGTGCCCTGAGATGCCTTGGCTCCTCTGTCCGCGACCA
TTGCTAGTTTGTTTGCACCAACATAGGTTCGCCAGGGCAAAGTATCAGCTCACTGATGCC
AATACCATGTATGTAATGGATGACCCCATTCATAGTTTTTTGCTTGCAACGGCCTGCATC
ACCGGGTCTATATATATATATATATCCCCTATCCTCTACACTCAAACATCCACAACACCT
GCGCCTGCAACCATCTGGAGCTGGTCTTGTGTTTCACCAATCTCTGCCTCTCTGCTCTCT
CGCTCGCAACTGCAATCATCTGGTATTGTTTTGCTAATCTCATTGTGTTTGCTAATTAAC
CTCTCAACAATGTTATCACCGTCATTGCTAGCTAGTGACTAACTGCAAAGAAATGAATTC
CTCTTCCTGCATGCAGGCTGCAGCACCCTTGAGCTCATCATGGAGGTTGCCGTAGGTGCG
GCACGGTGGGTGGTGGGCAGGGCGCTGGGTCCCGTCGCCGACGGCTTGCTGGAGGCCTGG
GCGGCCAGCAAGGAGCTCGGCCCCAACATTGACGCCCTTAAGATGGAGCTGCTGTATGTG
CAGGGGATGCTCAACAATACCCGCGGACGGGACATCGACAACCCGGCACTCAATGTGCTA
CTGCAGAAGCTGCGGGACCTCGCGTACAATGCCGAAGACGTGCTGGACGAGCTCGACTAC
TTCCGCATCCAGGACCAGCTCGAGGGTACTTACGAGGCTGCCGACGAGCACGCCAAGGGA
TGCATGTGCAACCTCTACCTCAACGCTCATCACACCGCTAGAGCTGCTGGCAAACTGCTC
TGCTTCTGTCAGTGCTCGCGTGCGTCTAGTCGTGCTCATCCAAGCGAGCCAATAGAAGAA
GATGATACAAGACAACAAGTACTCTGCTGCGCTTGGCCATGTGCCAAGCGGCGGAGTGCA
CGCGGAAACATCTCCTCAGCGCCACACAACCACCAGGCCAATGAAGAGGTCAGCGGATGC
ATGCGTAAGCTTGCCTCCGTTGCTTGCAACAGCATTCGTCATGTCGGTAAACTCCTCCAT
TGCTCATCCCTCCCAACCCATGATGATGTTAGTTCTGTCATGCCAACCATTTGTGGTGCC
TGTAAGCACAAGGTATCCCAAAAAAAGCATGTGAAAGAAACTCCAAAACTGGAGTTTGAT
AGGGTGGATCTGTCTAGAAGAATGAGGCTTATAGTAGAGCAACTGCAGCCCGTATGTGCA
AAGGTTGCAACCATTCTTAACCTAGAGTTGTTGGGTTCTAGCCATACTGCCCCAAGCATT
GCCAACATTCCTCGCACCACCACCTCTGATATTATAGAGCCAACGTTGTATGGGAGGGAA
CCTGCAAAGAAGAGAATCATAGATAGTATCACTCACGATAAATATAGTGGCAAGGACCTA
ACTATCTTGCCAATTGTTGGTCCGGGTGGCATAGGGAAGACAACTCTAGTACAACACATA
TATCACAGCCACGAAGTACAAAAACATTTTCAGGTCAAAGTCTGGATATGCGTGTCTCAG
AATTTCATTGTTAGTAAGCTGACTGAAGAGATTGAAAAGGCTCTACCCAGTATAGAAGAT
GAAAAAAAGGGCAGAGCAGAAGAGTTGATTGAACAAAGATTAAAGTCTAAAAGGTTTTTG
TTTATATTAGATGATATTTGGAAGTGTGAATCTGAGGACTGGAAAAGGCTTTTAGTACCA
CTCAGAAAAGGACAGACAAAGGGTAACGTAATTCTAGTTACAACTCGGTTTCCAGCCATA
GCAGAAATTGTTAAAACAACTAATAGTTCAATAATTCTGGAGGGTTTAGAACACAAAGAG
TTTAGGAACTTTTTCCGTGCATGCATATTTGGTGATGAGAAATCACAAAACGATCATGAT
GGGTTACTTAAGATTGGAGATAAGATAGCAGAAAAGCTTAAGGGATCCCCTCTTGCAGCA
AAAACTGTAGGCAGATTATTGAGGAACCACCTTGATGCGCATCATTGGACAAGAGTCCTA
GAAAGTAGAGAATGGGAAATGCAGACTGGTGAGCGTGACATTATGCCTGCACTGAAACTT
AGCTATGATTATCTGCCTTTCCATCTGCAGCAATGTTTTTCTTGTTGTGCTTTGTTTCCT
GAAGATTACAAGTTTGACAGCGAAGAGCTCATTCATTTCTGGATAGGGCTAGACATTTTA
CATCCTGCTGGTGGAAGTAAAACAGTTGAAGATGTGGGTCTGGAAAGTTTAAGTGATTTG
GTCAACAACGGATTTTTCAAAAAAGATGAAACTGATGGGCATCCATATTATATCATCCAT
GACCTGCTGCATGACTTAGCTTTGAAGGTTGCATCTCAAGAATCTCTTACTTTGCATCAC
TCTAATGTGAGATCAGTAGAAATTCGGCCATCTATCCGTCACTTGTCGATCATGATAGAT
GATCCAGATGATAGTAATGGAATAACCGGTGAAAACTTTAAGAGCGAATTGAAAAAACTT
AAGACAAAATTGAAGGTTGAGAACTTGCAAACGCTATTTATATTTGGAGGAGGAGATCAA
AGCTTTGTCAACATTTTGGGTGATTTGTTCATGGAAGCAAATGCTCTCCGTGTTCTTTGT
TTGCCCACATTATCATGTCCCCTGGAATCCATGTTGCATAATTTTTCATCACTTCTCCAC
CTACGATACCTAAAGCTAGGGACTTCTATGAGACGGATGCCTTTACCAACAACCTTGTCT
AGATTTTATCATTTGAAGATTTTGGATCTACGAAAATGGGATGGTTCGTTTCTTTTACCT
AGAGACATGAGTAACCTTGCAAAATTGTGCCATTTTCTTGCCCGACATAATGAGCTTCAT
TCAGGTATTTATAATGTGGGGAAACTAAAACTCTTACAGGAGCTAAAGGCTTTTGCAGTC
AATAAGGAAATCCAAGGCTTTGAACTAAATCAACTTGAGCATTTGATCGAGCTAAGGAAA
CTCGGCATTTATAACCTTGAGAATGTATACACAAAAGAAGAAGCGATTGAAGCAAAACTA
GTACAGAAAGACCACTTGCACAAATTAGCACTACATTGGGATAGTGAGCGACCTAATACC
GAGCCTGGCGTGGAAGTAGTGGTTCTTGAGAGCCTTCAACCACATAGAAACCTTCAGGAG
CTGAGCATTACAGGACACCGAGGCCCTTCTTGTCCAACATGGTTGGGTGATAAGCTTGTC
GTTGAGGCTCTGCAATCCCTCTATCTTTCTTCTGTTTCTTGGGATATTTTTCCTTCATTT
GGGAAGATGGTGAATCTTCGTGAACTAGGATTGTCTAATATTTCCACAATAAAGGAGTTT
GGTCCAGAGGAAAGCTTTTGCAAGTTAGTTAAGAAGATTACACTCGCCGGCTTAGAAAAT
TTTGAAAAATGGGTACCACAGCCCACTCATTTCTTCCCTCACTTGCAAGTACTGATTATC
GTAGATTGCCCTAAACTCTCAGAGTTGCCATTTTCAAGCCACATTGTTTACCCACTGAAA
CAAGACTGGAACATAGATTGGTTTCCCAAACTACAAGAGCTCTGGATAGAACATTGCCCT
GAAGTCTTGCTACTGCCTCCTATTCCGTGGACTCATTCTCTATGCTCTGTCGAGATAAGT
AATGTGGGATCAAAATTACTAGACAAGTTGGTCTACTCAAAATCATCTTCTGAAGTAGCA
TTGACCATTATTGGAAAGGTTGGTCTACATAACTTAGATCAGTTGTTGCTATTCAGTAAA
TTAACAGAACTTCAGGCGTTGATGATCCAAAAATGCCCACCTTTGGAGTTGAAGTATTTT
CTAATGCTAACCTCATTGAAGAAATTGTGGGCATCGTCTTCAAATCTTGGGGTGGTGCCA
TCAGGAGGTCAGAGTGGTGTCGAGTGGCAGCATCCTGTTGACGAGATTAATATTTGTTTT
TCTGATTCTAGTGGAAGGGAATTGACACAGTTCCTGTCCCACCTGCCAAAGCTATCCAAA
CTGGAAGTATCTTCTTGTAAAAACATAACACAGTTGGTTGTGGGGGTGGATTTGCAGCAA
CCAACAGTACCAATAGTATCATCGTCAACCTCTTTAGATGTTATAACAATGGATGATACA
CAAGTGAAAGATGAGCAGCAAGAAATAGCAGAGGTGGAGGAGGAGGCAAACACGATGGAT
GATGATGGGCTGTTGCTCCTCCGTGCACATCTCTCCAACTCTCTGCAGGCGTTGCACATC
CGCACAGGTGGTGGTGTGGTAGTTCATTCCCTCGAAGCCCTCCAAGCCCTAACTAGACTT
CAGTTAGAATATTGCTCTTTTCGCCACCCTTTCCCGTCCTCCCTGCTACAGCTGAAACTT
TCGTCCGTGAAGGGCGTGCTGACCCTTTCAAACCTCACCTCTCTAACTCGATTAGAAATA
TATGGTTGCGGAGAGGATTTTAGATGCGAGGGCCTGTTGCCTCTCCTTACTCGGGGCCAG
CTCAGCGATTTAGACGTTCAAAAAAGCCCCAATTTCTTTGGTAGGTGGGAGTGGGATCCC
AGTGCCCCAATTTCGAGGTCCTCCAAACTGCAGATGCTCAACACAGATGACATCCACGGC
TTCCTCGG