Map Locations of contig_136401 (6425 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_136401

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5580 2 1422 bp AK373676 Available Available None





CDS Structure of MLOC_5580






Contig Sequence (6425 bp)

>contig_136401 6425 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCCCTCTCTCCATCTAGCAGCTAAAGAGGGTTGGCTTCCAACGTAGTGAGGAC
AAGGTCGTTGCAAGGCTGCCTCCCTCGCAAGGGAGGAACATTACCACTTTTGGGTCTTCG
ACTCTAGTGAAATAGGTGCTCACCTCACAAAGTCATCTATCACATTACACCGCTCGTGAT
CCCTCCTTCTGTTTGCAAAGTGGTAAAAATATTGAGTGTGCCCTTTTATGGTCGGTCGGC
GAGAAAACTATCGGTGTGAGATGCAAAGTTAACTAGAAACTGACTGCCGCCCTAATGAAC
TTGGTGGCTCAGGATCCTTCATTTGGGCACATTTATGAGAGCTCTACGTCTGAGATGGCC
TTGGTTCCAGTGGAAAGACCCCACCAAGCTGTGTGTGGGCCTCGGGAACCCGTGCAATGA
GGTGGACATGGACCTTTTCTACGCCTCCGGTGCCATTTCTGTTAAAAATGGAGGCAAGAC
GCCATTCCGGGACACTCCATGGCTACAAGGGGAAAGCCGAAGGATATTGCCCCACTCATT
TTCAAGCCTCCAAGAGGAAGAGATGAATGGTGCGAGATGCTCTTCAGGACCGTGCTTGGG
TCCGCTACAAGGGGAAAGCCGAAGGATATTGCCCCACTCATTTTCAAGCCTCCAAGAGGA
AGAGATGAATGGTGCGAGATGCTCTTCAGGACCGTGCTTGGGTCCACAAGATCAACTCGT
CCAGCAACCTCACGGTCAACCATATTATTAAGTTCATGGACCTCTGGATCAGACTCGAGC
AAGTCACTCTACGAGACGATGTTGACGATGATATAACCTAGAGATTTGAGACGAATGGAG
AATACACAACCGCTTCCGCATATAGGGCCCAATTCTTGGGGTCCACGTCAACCACCATGA
ACCACACCATCTGGAAGGTTTGGGCACCCCGGTCAAATTCTTCTCTTGATTGGTGGTGCA
AAACAAAATTTGGACGACCAACAAATTGCAAAAAAAAAAGGGTTAGGAGAGCATTTGCAC
CCTTTGCACGCGGGCCAATATGGATTGGGTTTGAAGGACGCGTGACAGCCCTGACTTTTG
GGCTAGCTTTGGGAGGTTCGACAGGGTGGCCATTTTGTGACCCGGCAAGCATTCCCAATA
CAAAAAAGAAAAGAGCACAAAAAGCCAAGAAAATGTTATGCATCAGGGGAAGTATCAGAA
GCCCGTCTTCTCCAATGCTGCCCGTAATTGGAAGTATGATATACTAATATCATGCATCTA
ATATTAGTGTATGATATTACTTTCATAACATAGTATCATAAGTTAGTACCTTGGATTGTT
TTATTAGTTGTCATGCATGACACAAAGTAGTACTCCCTCCGCCCCAAAATAAGTGTCATA
AATTTAGTACTAGGTTAGTACAAATTTTATACTACAGCAGCGACACTTATTTGGAATGGA
GGGAGTATATTTAGGGATTGTTTGGTTCTAGACCTAGCATTGCCACACTTTGTCATATTT
TTTTTGCCAAGCTTGCCAAAGGGAATCTTGCCACAGATTTTGTGTGCATGTAATGTGGGG
CTTTAGTGTGGCTTGCCAAATATGTGGCTTGAACCAAACACCCACCTAAGTCGATCAAAC
TTGCCTAACTTAAGTGCGACAACCTTTGGCAAACTTAGCCTCAAACCAAACAGTCCCTTA
ATATGATACGGTATCATATCATGATAGCACATCATCTCTTTCATCATTTAATTGTGTGCC
ACATCATCAATAAAGTCTAGGTGGCATGCATGATACCGCCTATGATACTCCCGTTATGAC
CAGCTAAACTCCCATTACGACCAGCGAAAGAGTATACATATATTGCCTGGAAAGAGGAAA
TCAGAAACAGGTCTCGGAGAGCCAAAAGCCACACGAGTATCCAGCAGATACTTAATGGGA
GCGGAGTATCAGAGGGTATGTGCAACACCAGCCGCTGCTCCAGCACTGCATTGTCGAATT
GGAAACAATTTGTGAGCAAAACTGTTTCTTATCATATACTGCCTATGTACTTGAAAAACT
TCAGGGGCCTCCATCTTACCACAGAAAGCAGCGGTCCTTGCTTGAATTTGTTGTGGAAGG
CGAACGCGAGTGCCTTCACGCCCTCTCCAGGTCCTCTGATGAATCCACTAGACGCGCGCA
CAGGAATTTCATCAGACCATGTGTGTCATCAGGACTCACGACACAGTCATCATAATCAAG
ATAATGGGCATAAACAGGAAGATTGTGAACTTACACCAGCGAAACTGACACAAGCGGAGA
TCTTCTCACGTCATAGACAGCAACAAGTCCCTGATATGTTTCATTACCATCTTTGAATGA
CAATGCCAGGCGCTCTCCTGAAGCATCCCATGCTAATTTCTCTATGCCTCGACTGGATGA
AGCAGTTAAAAGCATAAATTACTGCATGGAAGCCAGCCACAACCAGGTTGTATTTCTGGG
TTGCTACAGTTGGGCTTACAAATATATAAAGTTTATATATGAATGATCTCCAAGCTAGAT
AAGATGAAAGCAAATTGAATTCACAAAACTTGTTACTTCAGAAATAAAATCAACAACGCA
ACCTTAAATGCTTCAGGTTGTGACATTAAGGCCCTGTTCAGAATCTCTCCGCTCCGCTCC
ACTCCGCAAAGCTGTGGAGCTGGGTTTGAGCCGCTCCGCCAAAATGAGCTATAGCCTGCT
CTGCTCCTGGAGCGCAGTCGATGGAGCGGAGAGGAACCGAACAGCCACTTAAAAGCATAA
ATTACTGCATGGAAGCCAGCCACAACCAGGTTGTATTTCTGGGTTGCTACAGTTTGACCT
TACGAATATATAAAGCGTATATGTATATGAATGACCGCCAAGCTAGATAAGATGAAAGCA
AATTGAATTCACCAAACTTGTTACTTCAGAAATAAAATCAACAATGCAACCACAAATGTG
GTTACTTGAAATATCACCAGCTAAAATTAGCATTCAAGACAATAGTAAAATATGTTGCCT
GAGGTCCACATGAAGTCAAGAGTAGAATGGTAGTGCCGCTTTTGTTACCTAACAATCAGA
GAGGAAATTTCTGGAAGCTCCACTGGTAAGAGATGGGCATCTGAAGTTAAGGAACACATC
ATAACTGATCAGGATTCAGGAAATGTACACAATAGCATAGCTTGAACTGAAAGAATGCAG
TAATGCCTACATACCTAAAGATGGTGGCTTTGATGAGAAGTGAACTGAACCTAGTGTGGT
CGAGTTAGAAAAGGATAACAATGCAACACGGCCTTCAGGGTCCCAGTTTGCTCCCTGACA
TCAAGCAAACAAGAGCCAATAAACATCATGACTCAAAAAAAAAAACAGTAGCACCACAAC
CAATCCCCTATACTGTTTTAAAGGTCTGTAAGCGACACCAGATATATTAGCTGTAAGTCA
CCATGTTGGCATAGCCTGGATAAGGCTTCTATCAAATTAAGCGTTATGCAAAGCCAATAC
GTACAATGTTCAAACTAAATGAACAGAGGCGAAACTAATTGCTGAAGAAAAATAAACTAT
GTTTAACCTAAAAAGCTTAAGTTACTTTCAACGACCTACAACACATTAATAACAAAATGT
AACAAATTCCAAGAAACAAATGGTGCAAAGTTGTCATAAGTATAACATACAAGTCCAGAA
AACAAATACTCCTTCCGTCCGGAAATACTTGTCATAAGAATGGATGTATCTAGATGTATT
TTAGTTCTAGATACATACTTTTTTATCCATTTGTGCGACAAGTAATTCTGGACGGAGGGA
GTACTTCATTTTTTACAATCATGCTAAGCATATTAGCTTTCGAAATAACTTCATATACAC
CATTATGGACGCAGGAATAAGTAATTTTTTCAAAATAATGCTAAACAAATTAGATTTCAA
GATGAATTCACTACACCACTATGGAATCAGGAGAACAAAGCTATATACACATAAAGATCG
CGTAATAGAGTTATAAACATAGCATGCTGCATGCAATAAGTTGAAGTTTCTCATTGATTT
CAGAACTTAGGAATTATTCTTAAATTTAAAATACTAGGAATTTAACTGTACAGTCTTCAA
ACTTAAGTTATTTAGGAACCTATCTACTACTTACAGTTACATATCCATTGGATGAAGACC
AGGGTTCTGACGTCCATGTGTTGGTCTCCCATAAGTGAAAAGTTCCATCGCTAACAAAAA
TAAATAATTTTGAATGATATAATTCATAAAAAAATACTCCCTCCAATCCAAGCATCTATA
CAACATCTTTACATTGTATAGAGGCTGCGTCAATGAATTCGGATCGGAGGGAGTAGTAAT
GAAAGACAGGAACAAAATATATATTCATACAATTTAGCAGTCAAAAAGTAATCTCCACTA
GGTGACCACCGCACCAACGATATGCTACTTAATCCGCGTCGTATAGGAGTTCCCAACCCT
GTATAGCAAAACAGATATGCATATACATTAATATACAGATCTTTACAAAACAGGATTGGA
TGTCTGAATTTAGAAGAAACAGATATACCTTCAGAAACATCCCAAATTGTGAATGACTGG
CCATTACAAGAGGCCGAGGCCAAGTATGTGGAGATATGTCAAGGGAAATTATCTAAAACC
ATCAACAGTTTGTATTCAAGTCACACACAGTGTAAATCTTTCTGTTTGCAGGTGCATCAT
AAATATTAATCTATAATTTACATATTGTTCTTTGCTGCCCAATATGGAGAAATGGAATTT
TCACATGTTGCCTGCAGTTCTTTTGAAGTTTTCAAATAAGCGAGATAAAAATCAATGGTA
ACCTTCAATAGCATTCTAAAAACTAATAAAGGATATCTTCCATCAGGTTTCCAGCAAAGT
GCACTAACTAGCTCAGTAGAAGAACCACGAAGAACATCCACCAGAATCCACTGACCAGTA
GAACCTCTAGGGAAGGCACCAAAGGAAGAAGAAGTGACACCAGATTTCACGGATGCAACA
TTGCCAGGATATGATGCTGACCAGAGGCATATACCTCCCCTGAAAAGAAAATTGCCAACT
CAAGTCAAAAAGTATATTATTATGAAATGACCAAGAATGTGGAGGCATTTTAATACTGTT
CTGTTATTAGGTGATACTAATGCATACTATGACGTACTTGCAGCCAACTGCAATCATCTT
CCCGCTGTTTGGCCTCCATTCAATAGCTTTAACTTCCTTTTGATGTTCACTTGTTAGACT
GCACGATTCTTTACCATCTGTTTAGAAAATAAGCAGTTATTATGGACTTAAACTAAGTGA
ATTAACATATTAGTTCAATAAAAACTGAAACAAGCACCTACGAAGTTATTCACCTAAAAA
ACCAGGAATGATATCCATTTATTGATATAAGAAAGTAGGTAAATCTCACCTGAATCCTCA
AAGTCATGGACCGTAACCTGGTCCTTCCCAGATACAAATGCTAAACAGTGTTTGTGCGGA
TTCCAGCTTACTTTCTTGGTATCAAATTCTTCTAGCAGTTTTGGCTGGTAAACGGAATAT
CCTTTGTCAGTATGATTGTCATGAATTTAAACAACCATAATGGAGAAACTATACAGCAAC
TTGAGAATGCTTTAAAGAACTGCTTGAGGATTTAATTTCGAGAGAACTGACTAAAGCCAA
GAAATGTAATAAGTATGTTAGAAAAGCGGGCAAATCATACACAGAGACAAACATATTGTC
AAATAAACATACAATAAAACAATGTCATGACATATACAAGAATGGAGTACATGGTAAGTT
TTCCAAGCTGTATTCGGTGTGCACTTTGGTAGCAGCTGGGGCGCTCGAGTGCCCGGCCGG
GTGTGTTTGTGGGGTGTTGGCCTTCTAGCGCCCTGTATGTTATGTGATGCTTTAGGCCTA
GTCTAGCTAGGTGTTGTTTAGGTTTTCGTCTGGTTTTACTCAATAAACCGAGCATCACTT
TTTTGTTTCTTTTCTTTTAGCACTCGCAATTCCGCCTATGTTGTCTCGACATAGCCGGTC
CCAAGCCCGGGTAAAGGAGGGTTGTGATAGGCTTGGCGAGCCAACGTCAAAACTCAACCA
CTCTTATGATGAAACCCAAAAGATTTTCGTTGGGGCGTAACCACTCAGCGATAGGTAAGC
TTTGGGACGTAGTTGATACAACAGTGAGGAGAGGTGTTGGTATCCTTTGCGTCCAAGAGA
CCAAATGGAGGGGACAGAAGGCGGAGGAGGTGGAAGGTACCAGCTTCAAGCTGTGGTACA
CGAGGACAGCTGCAAACAGAAATGGAGTAGGCATCTTGATCAACAAGAGCCTCCCTCAAG
TATGGAGTAGTAGACGTCAAGAGCAAAGTTGTCAGAATCACGATTCTGAATCGGATCGGA
GCTCCGTTGCTAGGGTCGTGAATCATAGAATCATAACTTTCAGGATCGTAGAAACTTAGA
TTCTA