morexGenes - Barley RNA-seq Database

Contig contig_136394
Source Contig contig_136394
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136394 (5797 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_136394

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5573	4	1481 bp	AK359876	Available	Available	None
CDS Structure of MLOC_5573

Contig Sequence (5797 bp)

>contig_136394 5797 assembly3_WGSMorex_rbca.fasta
CGAAGTTATACGAAATAGTATTGGCTTTCCTATGGACTCAAATCTGATTTCTCACAAAAT
ATAAAATGNNNNNNCTTCAAGCTTGTTGCCAATAGATGTTCCTTGTGCCTAGGGGGTCTC
CTGCAGTCCTTAGCCAATGCATCTTTCAACTTTTCTGAAATGTAATAGATGGAATCATTA
GTTCAATGACACATGTATTGTTATTAATTACCAAAACCAATTTAGGGAGAAGTGGTGCTT
TCAGAATGGGATAGGGTTTTCCAGCAATGGGGTGGCCAACCAGAGGGCGCACTTCTCATG
CGCGGTGCGAGCGGAGTGGGCTGAGAAAACCTTTTGCACGTGGGCTCGGCTGATCGAGCC
AATGCAACTGCGAGATGATCCCACGCGTCACCGGAGAGGAAATTAACTATGAGGCGAAAA
CGATTTTACCAGGAGCGAAGATCCAACGGTCTAGAAAAGGCAGAAGTGCAGATTGAATGT
CTAGGAATGCGCCAATCGGGGGGAGCCTCCTCGGAGAAAGTTGGCTAGCCTCATTATTGG
TTTAAATGCATCTATACAACTGGTAAAGGGTGGAAGGCTCGTCCTTTTGCTTGATGTTTT
GTTTCACTCTTGCCGCCTTAGTTTTTGATTACCGGTGTTATGTTCCCTATTGAGCTCTCC
TAACATATTCGGGGTTGTTATGGGGCCCCTTGATAATTATTTTTTGTATCAAACACTTCC
AGCAAGGACCAACATTGGTTTTACCATTCGCCAACATAATAAAACTTGCATAGGGACCTG
CCGCACCCATGGATAATTAGTCAACAAGTCGGGCCAGTGCTCCTCATGAGTGTTGGTCCA
AATCAGAGTCGTTTGCGGGTCCACGACTGGGCAACTCAGGTGTTTAATTTGGTCATTGTA
CGCTGCGCTCATCCAGTCGTGTCCAGAGAACGAGATACGTGTGGCTCCTATCGGGATCGC
CCACACACGGGAGGTCTTGTTGGATTTGTTTTACCTTTGATTGAATATCTTGTGCACCAG
GATTCAGAGGGCACTTTGGGCTATCTCGAGGTTGAGGTTTTTCACCATAGCTTGTGGTTA
ATTTGTGATGGATGAGTTGGAGCACCCCTACAGGGTTAAATCTTTCAAAAAGCCATACTT
ACGTCCTACCATAGGCAAACGTCCTCAATGCAGTTGTGCACTTCTGGTAACTAGATAATT
CAATGTTTCCCACGACATCGTTCGTCAATATGAAGTAGCCATCCTAGGCCGAGACACCAT
TGTAGAAGTGACCGAGCACAGTTCGACTCATCCAGAATCAAGGATGGAAATAGGACTCAA
ATAGTGCATCATGGACAAAGTATTCGTCCATCAATATCATTTTCTCATGGGCCACATTTT
GACTCAACACTCAATGCCCCTCGACCAATCCCTTGAAATTGAGAACATGCTCCTCCGCAT
GTCGGGCGTCTTCAATAACTGCATGTATCATTGATGCTTAATCATCATATTCGTCCTCAT
CTAATGAAGACGTATCAATGAACTTGTCATAGAAGTACTTCGCGGCCAAATACATTGGGT
TTGCATCTAAGTAAACAACAAAAACATCAATAAATTTGGCTACGGCATTTGGCCAAACAT
GTGATGGGCATGGTGTCTGCCATGTACAACAATGTGCGTGGGCGAATGTAACAAGTTACC
TCGGCGACGGTCAGACCTAGAGTAAAAGGGAGGGGTAGTCTAGTCGGGGTTTACATCGAG
AAGGAGCGGCAAAGGTTCAACAAGGTCTGATCAATGGATTAGGTGGTACATCAACAACAT
CGGTCTCAAACTACATGTATACCGACATCCACAAACCCTTTACTTCAGGTTTGCAGGGGG
ACATCCACAAACTCTTCACTTCTACTTTGCAGAAATTCAGACGTGCAACAGGAGCACAAC
AGGGCCGCACTCATCCACGAGGGTTTAGAGCATATGTAGCACATTTCGTAAAAGCGATCA
AACCTTTGTATTTATGGTACAAGCGAAAAATCGTTCCGTATAGATCTTGTAAAAGAGCAT
ATCCTGTAAAAGAATTACAGGCTCCCTGTATTCATGCTCCCATCCCTCATATGTGGAGCA
TTTTAGTTGTTTTCAAAGGATCCTGTAAAGTCGGTCAACGTCGGAGCACGAGCCTCGCGA
CACCGCGTAGGGGTAGCAAGCAGACGGAGAAGCTCGTCGACAATCGGTCAAAGCATCATC
AGAGCACGCGGCTGGCCGGGGCATCACCTGAGCGTCGTCGGAGCATCACCGAGACTTCGC
CGGAGCGTCACCGACAGGCCGAAGCGTCGCCGGCGACGGAGTGGAGCATCGTCGGAGCAT
CACCGAGACTTCGCCGGAGCGTCACCGACAGGCCGAAGCGCCCCCGGCGACGGAGTGGAG
CATCGTCGGAGCATGCGGCATGCCGGAGCATCGCCGCGTAAGGAGAGAAAAGAGAAAAAG
TTTACGGTACAGGCTTAGAGGATTTGTTCCTGTTACCTCATGGTGCCGTAGATTCATTTT
AGAGGAACATGTATATTGTTTCTTATGGTCCTTTGTGAGATTTTCTATAGATTATCTTAA
CCAAGTACTCGAGGCCAGAGCCATTGGGGTTGAGGTTATGTGAACGCCCCATAGACATCA
GCTCGAGCATGTCAAGCACCAATGTTGGACTACGCCGACAACAACGAAGTGACACCGGAG
GCATCCGACATGTAAAGAAATCTAGGATTCAGTCCTACAAATCAAATGACCGACATAGGA
AATTTTTAGAGCGATTTCAATTCTTCAAAATCCAACAAAAATCTTTCATTCAAAGAGGCC
CTTAGAGCATCTCTTCCACACCCCACAAATCGGACCGCCCACTATAATAATCGTCGGTTT
GCGAAATCCATCCCGTATGCTTGTCCTGAACAGATCCTTCAACTCACACGGTTCCTGATT
TATTTTTTATGAAATCCCACATCCACAAGCCCATTTCCTACAAATGTGTAAGAATTCGCC
CGATTTTGAAGGATCCACTTTCGGTTGTTGCGAATCAACTTTCGGCGGCTTCACTTCCCG
CCTCCATCCCTGCCGCCGCTTATCCGGCCACTGACCTCGTTTTCCGGCCTTACGGCATCG
ACATTCCGCCAGAGGAGTACCCGCCGCCCATGGGCGTGCCATAATATGTGCCGTCGTCGC
ATGTCCATCCGCCCAGGCCTCCCACGGCTCCAACTCCTCCGACTGCCGCTCCAATTCCTC
CCGCAGTCGCTTCCACCATCAAGAGAAAGAGGCAAGGGAGCCATCTCGTGCAAGGCACTG
TCGCAACCGGCGCGACACGAACTCCTCCCGTCACCGCTCCGGTTCCACGCGTCCTGGCCA
AGAGGAAGAAGACATCCTCGACTAACCCCGTCAATGCAAGGGGCAATCCCCCGAAGAAGA
AGGGGATTGTGTCGGGGGGTCGGGCTCCTCCTCTACCTTCGGCCGACCCCGATATCCACA
TTGACAACGAAACCGCCGGCTACGATGTTCGGTGAAACATCCGGGAAGTAAAAAAAATTG
CTTTGCTCCGGTCATCTATGTTTGGGCCTTTCAGAATTCTTGCTTCAACTTTCATCATTG
TTTTCAGTAGCCAAAATGTGTCCTACACATATACGAAGTTGTTGGCCAAGAGCACTGTGA
ATTCAGCTTTCATCGTTGCTTTTTGTAGCCAAAATGCCAAAATGTGTCCCTACACATACG
AAGTTGTTGGCCAAGAGCACTGTGAATTTGAGTGCCTCCTTGGTGATTTCAAGGCTTCAT
ATATCAAGGTCAACGCCGAGGTGAATGACAAAAATGAAGATGATGATGAAGTGTAAGAGA
TCAAGGAGGCCGACTATGACACTAGGATGGGGAGGACCGACAACTATACAGAGAGGAAGG
ATGTGTGTTAAATGAAAGCAAGGGAAAGCATCTCTCTTGACTCCGTTGTCGGCAAGGATC
AAATCAAATCCAACAATTGGCAAAGCATTAATGATAAATTTCACCAAATCCGATATTTGC
AAGACAGGTTTACGAAAACTGTTCCACTAGAGGGCTCACCGTCCTGTAATTTTCAATATT
TTCTTTGCAAGAGCCCTCAAACTACTTTTGCGGGCTGGCCATTTGCGAGATCTGCTAGAG
ATGCTCTTAGATTTGAAAGAAACAAACGTGGTTAACTCCAACCTAGAGAATATGCTCTTG
CAAGCAGAACCATAATATAGCAAGCATAGAAGCCTAGAACCAGTTGAACATAGACTTTAA
CAGATCCCACAATATATCACAAACAGTGCTGATAAAACGTGTCAACACTCAACAACTGGC
TTTTGATCACAAAAGTCTGTTCACTAACAAAACCACCGATCTAACTGTGGAAAACATAGT
AGGAACGAAGGCATTGTTCGCTGGACCCACTTCCCAGTCAAGGATTGTATAACTGAAATT
CATCTCAGCCTGCATATGGAGGAAACGACACATCAACATATAACTAGTTAATTACAGTAG
AAGAGAATTAATACGAGCAACATCAACGGAATGAACCTACTGGTTGGGCTCCTCCTGTCA
ACTGGTGGACCATGTCCATTATTGGATGGTGATATCCTACGCTCATGTCCATCTAGGCTA
GGTGATCGACAATCAGATATGTGCTGCCTCTTGTCCCGAGTAGGTGGAGAGTATGAACCC
CTAGGAGAATAGTTATCTCTGTCCCTGCAAACAATCAAAGATTTGACCTTAGTACCAAAC
ATATTGACAGGATGCAAGGAGCAACATATCAAAATACATATGGTAACTGACAAGTACAAG
AACAAGAAAGTATCATCATGAGCAAACTAAATTAGAGAACTACAAACTTATCTACAGCAG
GTAATGCAGCATGGCAACATCACCATTGGCTGGTCATGCCTATTGCCAAGCCAACTGAAT
TGAAAAGTGAGATATCAATGTTACCTTCTCCATCACAAAATTGGTTACCCACTTTGATCC
CAAAATATAACGTGCAATGCACTAAGGTGTTGCCACTGCTGGCTCAACAGCATCAGCTCA
CTTGAAAAATAACTGTTTTCCTCAGGTTTCTTAGCCAAGATTATCTTTACACTCTTGAGT
GCTAGTACCACTTTATCTTTAACTGTATGGCTTTCTCATGCTCCAACTCTGGAGGTCATA
ATACTGTCACTTTGGTCTTTATTCGCCAAACATCATGATTATCTTTTGGGCTTTTAGACT
CTACATTCTTTGACGACTGGATAATATACAAAACCAAGGCAACATATTTCAGAGCACAAC
TTAATAGCCTTACTTCAAGAACAGAAAATAGATAATACAAATTAATCAACAATCACGAAA
CACTCAACAAAAACCATGTTGCTATTGTTACAGTTTAATCAAGGATGTGTGGGGCTTGGC
ATGAGAAGGAAAGTCCCTTTGCTCATTTTCTTGTTATCTTTACTATGATTTACAAGCTAA
AAATGGATTCAGAAAAATCCACATAAGATGCACAATCATTAATACTAATCCTCTTGGAAG
TTACTTTCCTCCTAGCCTGACTAACGAGCTAATGAAAATGGAAATGAAATAACCAACCAT
ATAAGCTAGGATATTTAGCAATCAATTCAAGATGAAAATTTCAAGGATAGAACACTTTAA
ACAAGAATTTCCGAAGCTGATTTACGTTTTGATGATGAAACAACGACTTGTTGGTTAGTG
AACCAAAAGAAGTTAAAAAGAACGGAACACCATTCATTTTACCTGATTGCATTTCTAGAT
CATTGACAGGATGCGCGCGCGCGCGCGGGGGGGGGGG