Map Locations of contig_136373 (9338 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_136373

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5540 2 1272 bp MLOC_5540.1 Available Available LOC_Os03g58170.1, FRAME:-1, EVALUE:8e-140, 13103.m06390 protein stem-specific protein TSJT1, putative, expressed
MLOC_5541 1 140 bp None Available Available None





CDS Structure of MLOC_5540






CDS Structure of MLOC_5541






Contig Sequence (9338 bp)

>contig_136373 9338 assembly3_WGSMorex_rbca.fasta
TTTGTTTAAGCCTAAACCATAATTATTTTAAAGCCCCTATTCCTCCCCCCTCTAGGCGAC
ATACATGTCCTATCAACTGGTCACTTATGATGTTGGTTGGTGCTAAACCATGCATAACCT
TAAGAAAGCACCCAAATAGCCAATCAAAGCTTGTAGCCAACTCTTGCCTCACAAAACCGC
ACCCCAGCATGAATGATTGCCCATGTCTATTAATTCCAATAAATAGTGCGCATGGCTGTT
ATACATGTTTGTCATATATGTGGTGTCAAATGAGATGTAGTCATGATACGCCTCTGCATA
AGCCTTTCTTGTTGCACCATCTACCCATAAAATATTCTCCACCCTCTCCTCCTCATCATA
CTTTATGTTTTAAAAGAAGTATGGCTCCTCTTTTTTCTGATCTTTAAAGTAGGCAACGGT
CTAAATCATATCACCTTCTGTTGTTGCATTCTTGTCCGGTTCTAATTTTAGGTTTGATAT
GTTTTTGGTGCCATAAGGGACAATCACCTCCGTCCCATAGTAATCCTCCATGATGTGCAT
CATTCGACGTGCAGGTAAAGTCATAGATGGAGGTTATCCTAAACCATCTTTAGCCCAAAA
TGATTTCACAAAAAACAGACATTTGCGGAGAAGGCAACCAAAAAATCTTGATTTTCAAGC
AAGCAACACAACTTATATAGTCAAATTAGTGGTGGAGGGGTACGGAAAATGATGTGGAAG
ACATATAAAGCAACACAAGGCAAATAGTTTGGCTAGGGTTTGAACAAATCACACACTAAT
CAAAGGCAAGTTCAGTAGGAGAAGAGAAATTTCCCCATTCAATACACATACAGGTCAGGC
AAACTTTTGGCTAGGGTTTGTGCAATTGACACACTAATGAAAGGCAATTGTAGGCTGGTT
TGACAAACCTGTAGTTAAATTGCAGCTGTGGAGATGTTTGAGGAAGGCCCTTTCTCCAGG
AGGGGTCCCTTGGTGTGATCGCAGGTACTTAATCAAGGATGGCTTGTCAACCAATGGATG
ATTGTGCTCACAAACAAAGTAAATCACTTCCCAATGGCCATCCAATAAATTTACAACCAT
CCTTGCTTTGCATCCTGTTTGCATAATTGTATCCTGTTTCCACTTCTTGCTTTTCATTTT
TTTGTTTTCACTCATCATCAACAAACACAATTTCTTCCTCTTCATCATCATCATCTCCTT
GTTAAACAATTTCATCTAAAGCAGGAATAATTTCTACTCATCCATCATCTTCTTTTGGTT
TCCGAAACTTATTGCAAGCAAATTGATGCTTTATCGCCAGAACTCGTAGAAGTGTTCTTC
TTGATGGAAAAAACCTAGCTGCAAAGCATACGCATTGTAGTGTTATTTACCGCCTTCCAT
TGTGTCAAACCTCATGCCCAAATAAGGTTCCTTAGGCTGTGACCAAGCTTCATCATCGTT
CTCACCTTCCAAGCCTGGCAATTCATTTGTAATAGTCCCTCCAGTATCACCAACAGTACA
TGTGCCATCAAGGGTGTGCACATTTGTATCGACTGTTTCATGGACAGTTGTTCCAACTGC
GGCTACCTCAACACCAAGGGAGTGACCACCAATTGTTTCTGTCAGAGATTTGGCAACATT
TGGCACAAATATAGGGTTATGAGATTCTGCAACAAACTCAACATGCTCACCACCACCTGG
GAGGTTGCTCTGTTGTGTGCAAAATATAGGATCACCAATATTGATGTTGCGAGGAATTTG
TAATTCAGGGTTATTTTCTTCTGGCATTTCATTTAGGTCAATCGTCTCCAACCTTTTTAT
TTTTTCACCCAGAGAAATGAAGCAAGTTAGCTGGATGAGGCAAGCAAGTAACACACAGTA
TGTAGGCAAGAAGTTTACAAGAATATGGTTTTTTTGTTAACATAGTGTATTGATAGAAAT
TGCCTACAGTAGAAGATGTTTTAGTAGTGTACTGAATAAATATTGTTTTTGTTTTTCTAA
ATGCTTACAGAAGGCTATAGGTTTCATGTGTTTGAAGGACTGGTGAAGCAAGCTGCATGG
AGAAGGATCAACTTTCAAAGTGCTTCCAGCATTGGAAACTTGTCAATTTCATTGACATCA
AAAGTAGCTTATTTCATGTAGCAAAAAACTGTAAATAGCAGCAGTTCAAGTAATGTTGGG
TGACATAGTCACTCTGTTTAGCACTCTTTTCACATATTATGCTATTAGTGACATCAGAAC
TACCGTTCGTTTTGGAGCCCTTATTCATGGTTATCTTCTAACACATTGAGCACCTCATTT
TCATGAGATTTTTTCTTGCTTTTTCTTTGTGTTTGATCTACGTGGATCCTTCTTTTGCAA
GACCAATCTAGCATTTTTCCTAGGGAGGTCAACTTGGTAGGAAGCATTGGTAGCCACTTC
TCCAAGGCAATGTTCGTTAAACTTTTTCACAATTATTCAGTCAGGAAAGTTGCACTAGGT
AACATAAGTTGCTCACAGTACCAATAGTTCTTTGATAACTGCCAGGTTGCAGCATTTTTG
TATTAGTATTTTTGTGTGAGACTATCATATTAGTTTCTTATACATAATCATAATAGTTGC
TTAGTGACCAAGATTTTATTGTTGTTCACTAGCACACATAGTTACTAAAAAACACAGTGA
TTGTGTTGAAGTCAATGTAGCAGTTTTTCTATGTTATGGGGTTTTTAAATTTCCAAGTCC
AGGATAATTTCTTACAATGACAACATTATTTTCTCAGAACAACCAAAGTAGTTGCTTAGA
GTACCAAGAATTCTTTGATAACTGCCAGCTTGCAGCATTTTTCTATCAGTAATTTTGTAT
GAGACCATCATATTAGTTGCTTATACATAATCATAATAGTGGCTTATAAATCAGGGTTTT
ATTGTTGTTCACTAGCACACACAGTTGCTAAAAAACACAGTAATTGCATTGAAGTTAACG
TAGCAGTTTTTCTATGTTATGGGGGTTTTAAATTTCCAAGTACAAAACAATTGCTTACAA
CGACAACATTATTTGCTGAGAACAACCAGAGTAGTTGCTCAGAGTGCCAACAGTTCTTTG
ACAACTGCCAGCTTGCAACATTGTTCTATTAGTATTTTTGTGTGAGACCATCATATTAGT
TGTTTATACATAATCATAATAGTTGCTTAGAAACCAGGGTTTATTGTTGTTCACTCAAAT
TTAGATGGAAGAGTTGGGCAAACCTGACTTCCTTGTGCGTTTTGCTTCATGTTTTTTCTA
TATTTCTTTGGTTTTTATGAACTGGCTTGTTCGTATGCCGCCATTAACAGGGAGAGAAGC
TTTATAGGGAAAGAACATGCCTTGTTGAGGAAGAAGATGGGGACGTTGGGGGTGGTGGTC
GGGTGGGGGTTGGGCTTGGTGGGGAGGAAACACGTGAGGGGGATGGAGGAGTGGGAACCG
ACCAAGGCGACGGTGGAGTCGTGGGGGAGAGAAGAGACACTTGAGTTAGGGAGGAAGGAC
CCGGGTTACCTTTTCGACAGGGGGACCAAAATATGACCGGCTACGAGAGAAAGCTAGAGA
ACGGCCAGTCCATACAAAATATGTTTGTTGGACATATACTTTTCTTATTTTTGCGTATTT
GAATAATATAATAAGAATACACAATATTTGTATCGATTCCTGTAGCCACACAACATATAA
TTTGTGTATTTATTAAGAGTTGCGTATTTTATTGTTACATATAATTTTAATAATAATTTA
GCACACGCAGCCTCGCTGGGCGCAACCAGCCGGCCCACCTTGTGCCCGTTCTGTAACGCG
AGCTCTCCATGGCGTGGGCGCGGAGCTGCATACGCGTGGTCGCGTGTTCGAATCCCGTCA
GCGACCGATTTTCATTTATTTTATTTATTTGCCTATATAGCTTGACGATAACTTTTAAAT
GAATCCCATTCGGTGTTGAAAAATTACGAAAGAAAAAAAAGTCAGGAGCTCTTTCGTGCA
AAAATATAGGGCCTTTATATGATTAAATTATGAAAGGAAAAAAAGTCGCCCACAGGAGCT
CTTTTCCTTCAAAAATAAAGGGTATTTATATGATTACATATAAAACAGGGGGGGTTTTGT
AAAAAAACTTGTTACGTCGGCATCTGCCGAGCGGGCACTGTCAGTCAGATACACCTTGCC
GAGCGGGCACTGTCAGTCAGATACACCGTTAATATGTATTTATACGCGGTTTAGACTTTT
TAGCAATGGCTTAACCTCAAACTTGATACTGACATGTAAAAATGTTTAGACTTTTTAGCA
ACGGCTTAACCTCAAACTTGGTACTAACATGTAAAAATTACAAAACATGATCAATATATC
CCAATTATGGTATGTTTGTGCAATTAACTCAAAGAAAGTAAACGGTTTCTGTAGACTACG
AGGCGTCTACGATGACTTAGATGATACGTTGGTTCACTCTATGATGACTTAGATGATACG
TCGGCTCACTTTTTCGGAGATGGTCATACGGATATAATGTGTGTGTTCGTAAAGACGAAT
ACATTTATGTTTACATAAACGCTCATCTGTATTGTGTTAAGAATAATAATAAGAAATAGT
ATTTTCGTTGGCTATCATTGTTGTCCCCACGCGCCTTTGTACCATTGGTCCATAAACTTC
TTCGTGTGTGGACTAATTTTCTCTAATTATAATTATTTAGATAAAAAGGATAGATTATAG
GAGAAGCGGCAAACTAATTTCCTTTAATTATAATTATTTAGGTATAAAAGGTACTCCTTC
TGTAAATTAATATAAGAGCGTTTAGATCACTAAGGAGATCACTAAGGAGGGAGTAGATTA
TAGGAGGAGCAGGCGAGCTCGTCGGCGTACCGCAACTCTCGTTCTCTGTCTCATACTGTA
TCTTCTTGTTGTTGTATCAAGATACACTAGACGGGATGTGTTCACTGTTGAGTTCCTCCA
ATTATACGCGCTCCCGTTGGAAACGTCAGTACGCTACAGTTCCTCCAATTATACGCGCTC
CGGCGGGAAACAACAGTAAGCTACAGCAAGACACGCCGCCCCTGCACCATCCAGCCACCC
GTATCCCAACAGCAGAGACTTGCGCAAATAATTGGTGACATAGAGGAGGGAATGTACCAT
GCGCCATCTACAGCAAAACGCCTGACGGTCCGTTACATGTAGACATCTAGAACTAACACT
GTTTCAGCACAGCACAAAGCGCAGCCATTATGCCCCTGTCTGCTATGGCTGGCTAGCTGT
AGCTGTTCCATGGGAGAGTTCTTCCTCTCCATATAAATTATTTTGTTCTGGAGGAAACAG
GGGATCATCCACAGGACAAGTGGTGGTGCAAATTCAGGTTCACTCAGTTAGTAGAATGCT
GACAGCATATTTGGGATTGTAAGACATTATCAGAACCATACTTTTGGGACACATGTGTTC
AACGAAGCAGAAAACGGAAGTTAGATAATGTGATAGTATAATTTATCATTAGAGAACGGA
ACATCTATTTACACATCTGCAAGGTCTCTGCCCTTTTATTTGGATACAAGTGTTACATAT
TTACAATCCCTTATGCTGATCTTTCTTAAATAGTTTAAAGAAACAACAGGTGCAACAGTT
TAACTCAGACAAATTACCAAGATAATAATACACCCAGCAGGCAAAAATTGCACAAGGCAA
AGGCCACACTGAGCATAGGCATCCCAAAATGCCCAATTATTAGTATGTACTCCCTCCGTA
AAGAAATATAAGAGCGTTTACATCACCAAACGCTCTTACATTTCTAAGGGGGTATTTAAC
CGCGGCAGGGTTCAAAGATAGGAGTATACCATACGCCTGAAAGTTTGGGACGGTATCTAC
AGATTCAGTACTGTGAAGACCAATCTGCAGCGCTGCCGACCCGAGGAATTCCGGCGGTAT
CTTTCTTGGCTTGTTCATCGACCGTGTAAGTTGTGCCGCAAACCTCCCCTTTGCTGTCGA
CCCTCGGCACCGGCTTCACCTCGTTCAGAGGATGCTCGTAGCTCTGCAGTCCACCGGATG
TCGTGAAGAAGAAACCTGGCAAGAAAAACATCGGATGCCGGTGACCAGAGCACGAGAAAA
GAATAACAGAGATGATTGTAACGTTTGCTTGCTTGGTTGCAATTTAGGCGCACCTTTGGG
GAACGGTGCAAACGATTTTCCACAGGCGTTCTTCACAATTTCATCATCGTCGGAAATTAC
AAGATGACCCACTGAATCGACTCCCCAGTAAAATGGGACGCCGCCATCAGCATCCTGCAA
GAAAATGGAGAGCCCATATGAATTTATTTCGATATGACATGGCATGGTTTTGTCTGTCTG
TCAGACTGTCTTTGCCACATTAATGTGAAATGCGGAAATGCAGAATACTAGACAGGCAAC
ATGAAGATCAGTTCAAATAACAGAGGGAATCGGTAGCATTCAATCTGAAGTCGACGTTGA
TACTATCGAGCATTCATCTTATACTGAAGTAGTATGAACAACCATCGTCTGTTATCTGAA
TGCATATTGGGCCGGAGATGTCAAGACGAGATAAGATTGAAGGTCCGGACATACTTTGAG
TACGTACTAACAGTCACATGCTGAACATTGTAGTGTAAGCCCAAAGTACAGTAAGAAAAA
ATATTGACCAAAGTGGGGCAGACATTTGAGTGTTGAACACAACTTTTGAAACCAAACCAC
CACAGGCAGCTATGAATAAAGATCTATACTAGCAACGACAGGTAAGTGACGACAGTATAC
CAGAACTGTCATTTCAAAATCTTCGAAAAGAAACACGCGTCGTGCTGCGACAACTGAGGT
GGAAAGTTCAAAGTAACCACACAACTGCATTCTTAAAACCTGATTATCGTGGTTCTATTT
CGCGCCAAGAAAGGTTTACTAGAGCTTGCACGTTATTAAACTGAACTGAATCGAGAACAA
AAATGAAATCCAGATATTAACTTACAGCAGCCATGAAGACCGAGCTGGTGGAGCGATCAT
ACAGCACAAACGCGAATTTCCCATTTAAGTCTCTCACGACCTGGTCTGCAGGGTAAGGCC
CCCTGTCCCTCAGGGTTCTGTAGGCCTCGATGACGATGTTGATCTCCGTGGCAGTCTTGC
TCAACCCGTACTGCTGCTTCAGCACAGCCATGTTCTCGACCGCGCCTTGGAACAGGCAGA
ATATGTCGTCGACGACGCCGAACAACCTACCAACGTAAACGATTCAGTGGAAGAAAAGAT
ACGGCAAGAAATTAGCTGAACCCATGGCGACAGTAACGCAACGCCACGAATCCTCACGGC
AGAGCTCGCAGCTGACGCTGACGCAAACGCGCCGTCGATCCGTGGGTTTAGGCAGGAACG
CACGGCGCGGGGGAAACGATATCGACGGAGAATTCCGTCACCTCACCTGGGGAGGAAGGG
GCTCTGGCCGTGGGAAGTGTAGGCCATGGCGGCGCCGCCGCCGAGGTCTACGGTGACCGC
GCCGGGGCGGGCCTCCGGGAACCGGGCCGCGAGCCCGTCCGCGCCATGCCCGGCCTCGCC
CGGCTGCCGCAGCCCCTCCGGGCTCGGCGCCACCGCCCTGTCGAACACCGCGAGCATCTC
GGGCCGGAGCCGGAGCAGCCTCGCTCGTCCTCCGGCGCGCGGGCGTGGGCGTGAGAGGGT
GTCGTGTCGCAGTACGGCTATGGCGGTCGCGATCCTTCGGGTGAGCTCGCGGTCGCGCAG
GTGTAGTGCTCCATGACGGTGAAGCGTTGTCTTATACTGGGGCGGCGGCGGTACGTGGCC
ACGGCCGTAGGGGGTGATGCGTCGGTCGAGAGTGAGTGCGCGGGGAATGCCGCCGAAGGG
TCGAGACGGATCGGCAGCGGCGGCAGAGCAACTTTTCGCCTACCCGCCCTAGGCCTTTAC
TCTGTTCTAGTACCATAATACATTGTGCTACGAAACATTTTTCATACATGTTTAACATTT
GTAAAAACATGATTAATTTGTTTTCATATTTTTCAAATTTCAACTTAAATTCTGACACTG
AACTAAAACCATAACATTTATTTTAGATCGGAGGAAGTAACCTTTTTATTCATATCCCTA
AACATTTTTTAAAATATGCGTTTTGCATTACTTTGAATGATACGAAACAATTTTTTCCAA
CTACACGAACATTTTTTCTCTACTAACTTTTTAAAATGTATGAGCACATTTTTTAACACG
TGTTCACTTTTTTTAAGATGGCACACGCATTCTTTTTAATGATATGAACATTTTTTAAAT
TGCACGATTTTTTTATTTACTATAAAATTTATATTTAATGGCATGTACATGTCTTTGAAA
CACTAGAACAGTTTAAATATGATGAACATCTTTTTTTAATTTTATCAATATATTTAAAAA
GTTGCACGAAGACAAATGGTGTGTTAAAATGTTAATGAAGTGTTAAAAAAAGCTCGTGCA
ACTTTTCTAAAATATATGTAAAAAAATGCTCATGGAATTTTGGCATATATTTTAGAAAAT
GCTTGTGTCTACGGTCCAGATTTGACCTAATATATAAGGGGGTGGAATAAAAAAGGATTA
CCTTTTTTCAATTATCTGCTCATGAATTCACCTCTTTTTCTTTAGAGAGGTGCTAAGAAA
TCCACTTTGATGAAAGGAAAAAGTTCATTAAATATCTAAGTTTAAAAGCTTTACGTTCCC
TATCCAAATCATGATTTCCCATCGCACGGCCTACCCAACGAAAATAGTATATGTGCTTCC
TCTTTGTAATGCTATCTTATCATTTGTTGCATCCGTTTGTAAGTAAGTGGTATGGTTTTA
TTTCACACCAGTTATTTAGGAATAAGGGGGGATATTTTTTTTTGAGCAACTATCACTATT
AGGAAAAAACTTATAGATAGAATTTTAATGGTAGCGTCGGTTGTGAGCCTAGTGCGGGTG
GGGACAAGCGCTATAGGTATCATGTTAGAGTACCACCCGTCGTCGAACATGCACTACTGG
TAATCGGTCCGACCGCGACATGCAGGGACGACCTATAGTAGTAGCGTTCGTGAGGAAGAA
ACCCTACTGTTCAAGCCATAGCAGTAGCGCCCTTTTTTACCTGCGTTATTGCTAGGAAGG
GCGTGGACTTATCGTCTTCACTCGCACACGCCCCTCACTCTCTCCCCTCTTCCCGTCCTT
ACTCCCTCCCTCTCCACTCTACATCGTCGTCGCCGGTGCCCTCAACGCGGCCCTCCTCCG
CTCACGCCCCGCATTCCCTCCCTCTTCACTGTGCGTCGTCGTCGCCGGTGCCCTCAACGC
GACCCTGCTCCGCGCACGCCCCTCATTCCCTACCTCTCCCCTCCTCACTCCCTCCATCTC
CACTCTACGCACCGTCGTCGCCCCTCACTCTCTCCCTC