morexGenes - Barley RNA-seq Database

Contig contig_136370
Source Contig contig_136370
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136370 (7427 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_136370

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5537	3	1249 bp	MLOC_5537.3	Available	Available	LOC_Os02g33860.1, FRAME:-1, EVALUE:0.0, 13102.m03674 protein WD domain, G-beta repeat domain containing protein, expressed
CDS Structure of MLOC_5537

Contig Sequence (7427 bp)

>contig_136370 7427 assembly3_WGSMorex_rbca.fasta
CGATGGCATTGACCTCCAGCGCACGTTTGCGTTGGCTATGCTTGTCGTCTTGCTTGCTGT
GAAGATGACGTCTTGCTTGCTGTGAAGATGACGTAGGTCGCATCCTGGTGAGGACGCATT
GCGGACGTCAACTGTCGTGGTATTTTTGAGACAAATGCTAAGGGATGATTTAACTCGTGG
TTTGGGACCGATGGGCGTCAACGGAGTCTGGAAGCGGGTATAGGCGTACGCACATGACTC
CGATGTATCCAGGTTCCCGGCCCTTCGATGAGGTAAAACCTCTAGTCATGCCTATATGAC
TATATAAGAATCGCAATACAAATGATGCTCCTAGCTGTTTTGGAAGGAGCGAGACGGAGC
TATAGCTACCGGCCTCACTTTCAAGGATAAGATAGCCTCCGCACAAGAATTTGCACGAAA
GGAACAAGTGCACTTTCAAGGGTAAGATAGCCTCCGCACAAGATTTTGCACGAAAGGAAC
AAGTGCACTTTCAAGGGTAAGATAGCCTCCGCACAAGAGATTGTCGCGGCAATCAGACGA
CCAACTGAGCTTTGGCGCCTAGCTGAGCAAAACACATTGAGCTCGCTTTTGGGATCCGCC
GTGAGAAATTGTTATTTCTCTTGCAGCCAATGGGGATGCAGTTTTCTTCATTTTCAGTTC
CTTTCCTTTTTGTCCTTGACCTTAGGATCACACCATGTTATCTTCTGTCGCTTCCTGCTA
AACATCAACAAAGCCAGCAATTTGCTGGATCTTAAAAAAAAAACCATCAGTCGAAGATTA
AAGACCACCCATCATAGCCAGCCTTTCCAGGTCTTCTTACATAGTAGCAACAACGGTTCT
CAAAAAGGGATTGTCTTGTGCATCTGAATCCTCGAGTCTGTTCAGTGTTCACATGTCAAC
GTATCACGTGCAATAGTACACATTATGCTTCTGAATACTTGGAACTTTATAGATGGGTCA
TAGGGAGAATATTGTCATGGGCGCATCTGTAGGGAATAACACACATCAGCAATTCCTATC
TTCAGGTCCAAACACGAATGGTGCCATCGACAGATGATGTCAACATGCAGGTCTTTGTTG
GGTGATAACTGACGCTGGTCACCTGCCAAAAGAACGAGAAGCATAAGAAAATTATGAAGA
AGAAAATTTTAAACTAAAGTAGGAAACAATAGTTAACCAACAATAACAAAACAAAGAAGC
ATAAGACGTAATTCTGAGAAGAAAATAATACCACAGAGCTATGTGCTCGGAAAGTCGCAA
CAATAGGTGCATCCACCAACTCCCAGAAGAAAACGAAGCCGTCCTCGGATCCACCGACAA
CAAATGCATCATCATTGGTCAGGCAGCAATCCATCTTGAAGGACTGTAGAAATTGTACAG
ATGAAAAAAGTGAGACAGTGTTTCTTTTCTGCAATATTGAAGTAACCAATGCAATCACAA
CTTGTTCAGGTGATACCTTGCATATATGGCCCTTATACTCTTGTAACATTTCCCCAGAGT
TCCTAATAAATAACAAAAGCCAGTAGATTCGATTACTACCAAAAGTCATGCATGCTTAAG
GCAACAGCGCAGTGAGGTCCCTCTATATGGAACTTAGTCAATGAGACCCCCTCCACAACA
AAATGGTGCTACATTTCGTTATATTTTATGTGGAAAGATGAAGTGGCAGTAATTCATGCA
AACATGTACTTCCCTGTACAACAGAGATTTGTGATCCCTCGTCAATCACAAGACTTGCTA
GGAAACAAAACAAACACTCTATATATGACCCTAACCTCGTCGCTTGCCGTTTCTTCCAAA
AACAGAAATAATGCAGATACCAAAAGCACAAGAAAGTCATTCCATGTAGAGATTCGGACA
CTACTTCAAGGTTCAAACTATGGCTCATAAACTGTGATGTGCAAGGATTTACCCCCAAAA
AAATGCTCATGCACAACTATACATCATTAATTCGTCCATTCCAAATGAATTGAAGTTCTA
GCTTTGTCCTATTTCAAACTTTTCAATATTTGATCAAGTCCACAGAAAAATGTGATAATA
TCTACAACGTAAAATAAATGTAGTATGAAAAAATATATTTTATGTTGAATCTAAGGAAAC
TAATTAGATGTTGTAGATGTTGATACATTTTTCATGTGGAACTTCAATTAATTTGGAACA
CAGGAAGTAAGTTCAATTAGGACATCTGTCTCCATGAACAAGGAAAAAATGGCCATTTGA
CTGGCTAACTACCAAGAAGACACTGTAATTTATCAAACTATTGCTTCAGACATTTCATGA
TGAAACAGCAGGTTCAAATCCAAAGAATCTGCAAAACACCAAAAAAAGTTCACCGCAGCT
GCCAAACTCTTTGGTTGGACAGATTTAGACAGCGAGAGGTCTGATGGCAAGATAAAGAAG
ATCCCATGGTCATCCAACTCGATACAGAAAATAGATTGGTAGCTATGTCCAGTCAAGTAA
CGTGAAGCGAAGGAGCAGACTCTGTTTCTAGTCCATGTGTGACATAAGTTCCTATGATGA
GGAACTGAAAGTACATGTTACATAACTACTGGCCATGTCATAATTCCAAGGAAAAATTCA
TCATTCTACAAAGTATAGGGGGTCTAACTGCTTCAAATTTCAAATAGCGCTTAATTGCTC
CAGATCGCTAAATAGAGGGGCCTCCCTATCAACCTTGTCAAGTTCAGATTGTCGGCTTAT
GAAGAGTACTTACTTGTCAAGAAGCCTCACGGTAGAATCCAAACAGTTAGCCAAGATGCA
ATTGCGGTCATTCGACAAAGATATACAGTTGACAGGATGACCCAGGTTATCAACAGTCTC
CCTGTTAAGAATGAGAGAAATATATCATTAAACAATTTAGAACCAGTCAAGGAATGGATT
AGGATCCCATCAACACTTCCTTGTTTAATATTCCCTCCGTCTGGAAATACTTGTCAGAGA
AATGAATGTATCTAGATGCATTTTAGTTCTAGATACATCCACTTTTATACATTTCTATGA
CAAGTAATTCTGGACGGAGGGAGTAAAAGAGAAGACAAAAATTTTCATTTAGAAAATAAA
AATATATCAAATTAGTTGAGACTTGAGTACGGAACAAGGTATGCACTTACCTACCCATGC
GAATGTCAAATGTTCGGACGGTACCATCAACACTGCCAGCAATTATTTCGGTGTTGGTTA
CATTAACTGACATTACACTGTCTTGAAAAGTATCAATTGTCTGCACTAGGAGATAGAATT
CATGACATAACCAAGTGTATGAGAAAAGAATCTATGACTATGATTGACGGATCCATATGT
TTTTTAACAAGTAGAAAAAAAATACCTGAATTGGATCACTGCTCTGTGACCTGCAGTCAA
ATGCACGCACACTACGGTCATAACCAGCGGACAGTACAACCGTGTTGTGCTCATTAAACT
TCACTGAATTGACCTAAGGAAGCAGAATGGAAAATCTCAAACATGTAGAATCATCAAGAA
TCAAACATCTGTCATAAACCTGCTCTTTTATCAGGTTTAGGGTAACACTGATAGGCCTAA
TAATAATCACACTGTCAATGTATGGTAATTGAACAACATCATAACACCTTAGTGCCATTA
CAGAAGTATGGTATCAGTGGACTGCTTTGGACACAGTATTTGAGTTCCAAAAATGGTAGT
AATACGGCGATGTGCAGAATTCAGTGTTTTATATACAGATTGCTTGTAGAGTACTTGCCT
TATGAGGTTCTCCGTTACAGTAGCAATCATAAAACGAAGAGAGGTGAAGACACCCTCCAG
GGTTCAAAGAAAAGTTCCCAACATCATAGTGAAACTACGGGATTCACATTGTTGCATTAC
AGTGGTCTGCATTACTCTGTTTCCATTACAATCACAAACAACCAAATACAGTAGTTTTCA
CTATGGCATTGCTACCAGTACTACTTTACACAAAATACGGAGCTAAAACCATTAGAGTAA
CACTGGCATAGAACTAATTATAATGCTGTCCAGTAGCTTGCTCCTATGACACAGAATTTG
CTTAATTTATAAGTGAAAACTGAAAACAACAAGCCCTCAATAGCATCGCTAGCGAGGGCA
TCAGCACCACATCACAATATCCCAATCAATCGATGGCTGATGCATTACCTCGCTGTTGTG
GCCGCGGAACTTGCGGATGACTTTGCCGGAGGCGACATCCCAGTAGAATATCTGCTTGTC
CCCGCCGCACGACACCAGCTTCGCGTTGTCCCTGAGAACGGAGTCGGCGAGAAGCACCCG
TTAAATTCCGCAGCCGTGCGCCTCCAAATCCAAATCAGATAGGAAGAAGGGTTGCGAGCG
ATGGTACGCACGAGGACGCGTTCACATCGCGAACCTCGCGACCGTGGGATTTATAGGTCT
TGACGTGGGCGCCGGTGTGGGGGTTCCAGAGGCGGAGGGTGCGGTCCTTGCCGCAGCTCA
GGCAGTATTTGCCGTCGTGGTTGAAGCGAACGGCGAGCACCGCGCCCTCGTGCCCCGACA
GCGTCCGCGATTCCGTCCGCGGCAGCTGCTGCGCCGCCGACGACATCTCCTTTGCCCTGC
TACGGGCGGACGACTCCGGCGTCGGGCTTTGGAGGGTCAAGACGGCACAAGGGAGCGCGT
AACTGGCCGGCCCATTATTCCGGTTTAGCTACGAGGCACAGCCATAGTCTTTATCGGCAA
CAAAGGAGCAATTTCAGACTTTTCAGTGATTCAAAAGCCTCCTAAAAGATCATTCTCATG
CGTCGTCACCTGATACGTTTTCAGTCAGGTGGAAAGTTTTAAAACGGTTTTTCATATATG
TTTTTGGCTTTTTAGAATAATTAAAAAAAATGATATTTCAGTTTTCATCGGCTTTTCTTA
GCTTTCGACGAAAGTTAAAAAACATGAAAAAATATGGTTCTGTTTTTTCGTGAGAGGCAT
TGTTTTGCTTCTGTAAAAGAAGAAAAAAATATGTTTTTGATTTTTTGTGAAAGACATGGT
TTTGCTTTTGTAAAACGCACGGTTTTAATTTTGTGAGAGACACGGCCATGTCTTATGAAA
ATTCTTTTTTTTACGAGAGACACGTCCATGCCTCTAGAAAAAAAGAAAAATATGTTTTCT
ATTTTTTTCATGAGTGACACGATTTTACTTCCGTAAGAGGCACGGAAAAATAACGTGTTT
ACGTTTTTTCTACCACGAAAAGTACATTTTTTTATTTGATTTTTTTTGAAAAAAAAGTTC
GTCAAAACCTATTAACATAAGATCTACTCCCTCCCTTCTTAAATATAAGTCTTTTAAAAG
ATTTCACTAAGTGACTACATACGAAATAAAATGAATTAATCTATACTCTAAAGTATGTCC
GTATATAGTTCTCTAATGAAATTTTTAAAAAAACTTATATTTAAAAACTGAAGAAGTAGT
TTAAAGATCTTGATGCGAGAAACCCAACGGAGAAAACAGTTCGAGATTTAGACACGCGGT
TTAGGAGATAAAATATTTTAAAAATACATATCTAAAAGAAAATACTTTCAAGTTGCGATA
AATGACACACATACAATATATCACTTCTCGTAATCTGGAATGATAAATGTGATCTTTAGA
AGATGTACTGTTAATTTCATCTGTATTTACCGTCCGCGGGCGGCCAATCAACGAGGAAAC
GCTCGCAACGTCGGCGGGTGGGCCGGCCCTGTTCACAGCAGGGTATGCTGCACGTTTCTG
CCTCAGATTTTTGGTCGTTTTTTCTTCTTTTTTTCGTTTTTCATTTTTCTTTTCTGTTTC
TTTTTATATTTATGTTCTTTTATTCTTTTTTACTTTTTATGATTTATTTTTCTTCTTTTT
ACTGTTTTACTTTTTCTATATTATACAAAGCTTATTCCATGTTATCAAATTGTTCATTAT
ATATTTAAGAAATGTTCATGGTATATTAAAAAAAGTTCATCATACATTAATATGTTCATC
GTATATCAGAAATTGTTCAATGAATATGAAGTATTCCCTATGCTTTTAAATTTGTTCAAT
GGTATATTACACAAATGTTCAACATGTATTTGAAAATTGTTCAACATATATTACAAATGT
TCAATGCATATTTAAAAATTATTCAACGCATATATTTATATATATTTTTTAAAATGTTCA
TCATATATTAAAAATTGTTCATCATTTATAATTTAAAATTGTCATCGTATATTAAGGAAA
TATTCAACAAATATTACAAAATGGTCAATGCCTGTTTTTTTAAACTAATATTTGTTATTT
AATGCTTCACGCCGTGAATATATCACTTGAACTCCCTAGTTTGGTTGGCTAGTAGCACAA
GCTAACGAGGAGAAGGTCGCGAGTTTGAGTCTCTTGCAACACTTCTTAGGGGGATTTCGC
GCATGTAGTTCAATAGCTCGAAATGGTCGGCTCATCAGTGCATGTCTTCAGCGAAGGCTC
AACAATTTGCCGCCCGTGGACGGCAAAAAGGAGCTCTCTATCTAACTGTTTCTATCTATC
TACGTTTAAATGTTGCTCAAGTTCCCCTCTCGCTAGGGTTTTCTCCTCCCAACGGAACCT
CATCATCACTCTGGAGATTGTGATCCCCTCCCTCCCTCGTCACCGCCGGTAGCCTCAGGT
CCTGGACTCGAGGAACTGGTGGTTCACGGGAGGAGCAGCTAGGGTCTTCCCGCCCGCAGA
ACACCACTTGTTCGGGCAAGAGAGGTGATAGACAACATGTCGGTGGAGCCTGACTCGGAC
CAGGCGATGAGTGACATGGAGGCGATGATGGTTGAGTTAGGGCTGAAGGAGGATGACTTG
CTGGACATGGTGGTTGATGAGGCCGGTCTGTTGGAGGAAGCGGTTCGTTGGTTGGCGATC
GCCCGAGTTCACATCACAAAACCCTATAGCACCTACTAGTTCTAGAGGAATATGCGAGTC
ACATGGGATCTAGCGCAGGAAGTCAAGTTTCGACCTCTCTCTCGAAACCTTTGTACTCTG
CAATTTTCATGCCTCGGAGATTGGGAAACTGTAATGGATGAGGGTCCATGGACTTTTAAG
GGTAAGGCGGTGGTCATCGAACCATATGATGGACTCATCAGACCATCATCAATTTCCGTG
AGCAAGATTGAGCTGTGGATCCAAATCCATGACTTGTGTGATCTCTTTTTTCATCTGATC
AAATCGCTTGCATCCACAATGAGAGAGTTTGTCTTTGCTGAACTAAAATCCTCTCGCTTT
GAAGGCAATTTGTAGGATCGAAAGTATGTCTAAGGGGGTTTATTAGACTACTTGACAAGA
TAAATTTGTTACCTTTTCCCAATTTTAGTTGAGAGGCGGCTATGGCAGTTATAGCAAGTC
AAGTACATCCTACACATGTAGTTCTAAGAGTGTAGCAGCGGAAAGTAAACACATGCAAGT
GTAAAGTAAAGGAGTAAGGTAGGGAAATCGAACGCATGAGGTTGACA