morexGenes - Barley RNA-seq Database

Contig contig_136341
Source Contig contig_136341
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136341 (10056 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_136341

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5511	4	2123 bp	MLOC_5511.1	Available	Available	LOC_Os08g05560.1, FRAME:+3, EVALUE:0.0, 13108.m00545 protein zinc finger, C3HC4 type domain containing protein, expressed
CDS Structure of MLOC_5511

Contig Sequence (10056 bp)

>contig_136341 10056 assembly3_WGSMorex_rbca.fasta
CCCCCCCCCTCGGGCCCCCCCCGCCGCCGCCGCCGTCATGCCCGCCGCCGCATGGCCGGT
CTGCACCATCTGCTACGAGGACCTCCGCCCGCTCTCCGACCAGCACATCTACTGCCTCCC
CTCCTGCGGCCACGTCTTCCACGCCCTCTGGTCCGCCCCGCACCGCCCTTCCCCCCAAAT
CCGTTTATTTTCTCCCGTTCTCTCCTCGCGATGGCCGGCTAATAGAGACGCTTCCCGCGT
GTTGTTGCAGCCTAGAGCAATGGCTGGAGTACTGCCCGAGCGCGGGCGGCAAGAAGAAGG
GCAAGTGCCCCATCTGCAAGCAGGCCTGCGGCGCCTCTCACCCGCCGACCCGCCTCTTCT
TCCAGTCCACGGGCGCGTGCCCCACGCAGGCACCCCCCTCCTCGTCGCAGGACGCCGACC
CGGAGGAGCTCGCCGCCGAGGTCGCCCGGCTGGAGCAGAAGGCGTCGTCCCTCGGCCGGG
CGCTCGAGGAGCAGCGCGACGGGATCCAGAAGCTCAACGCCGAGGCTAGTGCTGCTACCG
CATCTTCCGGATCTTTATTGTGCTGGTGCTTTTGCGTGGATCGCTAATGGTTTCTTGGTG
GTTCTTGGTTCAGGTCGTTAGGTGGAAGGAGCAGGCGGCGACCGCGGAGACGATGCGGGA
GTCGACTAGGAAGGAGAAAGAGTCTGTACAGTGGCTGCTCAATGCGAAAACTGAGGTAAG
TAAGGTCATTGTTCAGGTGGCGAGATTTAGTCTCCCTTCTCTGCGTCTGGCTATGGATTA
CTGAATCGGGTTGGTAAATCATGGCAGGAGTTGTCGAGGAAGACGTCGGAGTGTGTGAGG
TTGCAGGAGAGGAGCCTTGCATTGGCCAAGGAGCTTGCAGCTCTGAAACTGTACGCTTGT
TCAATCTGAAGTGTGCAGAAATATTTGTGTTTAATGAGTGAAATGTATCTGACTTAATCT
CTTGTTCTTAGGTCGACTGACATGAACCTTCAGGAAGAAGAGATCCTAAAGTTGGCTTCA
CTGGGTAACCATGGAAACCTTGAGAATGCTGTTGACGTCCTTAAGAGATCACTCGCTCTC
CGCAACAAGTATAATTATCCATCATTTTCTTATGTCGAAACATGTCGTCCATGTTGGGTA
TGCGTAATAGTTTGGGGGTAATGGTGTAACCATGTTTTACACTTAACAATGGAATCTCGT
CATCCACTTCAGTAACTGTTAAAGTAGTACTTGTAATAGTTTACGTAAAACTGAATATTG
ATTTTGCTTTAGCTTCTGATGTCGAGTTATTGAACTTTGGATCGTTGAAGGAAGTGCAAG
GTCCTCAACCTAAATTATAGTCAGTATTTCAGCTATGAAGTTGGAGTTGCGACTTAAGAC
AATCTCTATGCTTTGATGTCCATAGCTGGAGTTGCGACTTGAGACAGTTTCGATGCTTTG
ATGTCCAATGATGATACTAGTATCAAATGATTTAGCAGGTGACATGTTGCGCCATTCTGG
AATCATTTCCATACAAACTAGATAAAGAACCAGTGTTTTAATAGATGCCCATGTTTGTCG
TTTCTGATGAAAGTGTCCTGTCCTCTCTTAAATGGATTCTTTGGTTATCATAACTGATAA
TCTTACTTAACTTCGTGAATATAATTTTTTCAAAAAGCTACTCTTGTAGTGTATTATTTC
ACTTTTTACAGCATGGATTTCAGGAGCTACAAAGACTTGATGCCCATGTTTGAACACTGA
GTAATGCATTTTTCTTTCAGGAGCTACAAAGACTTGATGGTCCAGTGCAATCAACTGGGA
AGATCAGAAAGTCGTGCTCAGCAGAGGATTGATAAGGACAGAGAGCTGATAAAGAAGTTG
AGGGTATGCTCATAACAACTTAAGATCTGTTCCTGAATTTACATATTTAGTTTGGGCGTT
GATATCTGCAAATAACAACAGGCAAAGGTACTTGATCTTCAGAAGGAACTGGAAGAAAAG
GAAAATAATGTCATCAGAGACTTGAGGTGTTCAAAGAAATCTAAAACTGACCAGAACCAG
ACAAATCCAGTGAATGCCAATGCTAGTAATGGTTTCTCTAGTCCAAGTGCTGGATATGGG
AATCAAACGGTGAAGCTTGATGATGTGATGCAGGATGGATGCAATGAGAAGGCTCAGTTG
AACGAGGTGACCCCTGAAGTTAAAAAAGATCTGATCTTAGAAGACAAAGATGTGATAGAC
TTAGATGCCAATGACAAAGACACGATAAAATGTCCCACCAAGCCGTTTGGGTATAACGAT
TACACTTCGAATACACGAAATCAGTCCAGTCGCTGTGAGCGTGATACCAAAGAGCCCACG
ACATTTGGATGTGAGCCTTCCTTCTATGTACCAGAAGAAACATCGCTTTTGAAACACACG
ACGGCTACTGGAAAATCAACATTTCAGGAGATTCTTATGAAGACCAAACTGCAAAACATT
CAAGAGCTTCCTGTTCTGAGAAGCATGAATGTTACAACTTCACCAACATGCAAGAAAGAA
TCGCTGACAATGGGTGGCATCTCTAAACAAGCAACTAGGCTTGCTTCTGGCACTGGACCT
CAGACATTTCACAATTTAAATTCCCTTTCTGGTGAGTTCTTTTGCGAAGTTGCTGATTCA
AGACCTCTTCTAGTTGTTTCTTACTATTTGGGATATCTATTGTTTGCTGTTTCTACTCAA
TCTCCTGTACTTAGCAACCACCTTTTTCTACAATCAGATGATGATTTTCAAACACTACCT
GGATGCACCGGTGAAGGGGCAAGAAAAGGCATTGGCAAATGGTCCAAGGGCGTGACAGCA
CCTGGTTATCTAGGCGCAAACACAAACAAGGGCAATCTGATTGCTGTGGGGCCTGACGGG
CGCGGGGGTAAGGTAAAAGTCCTGAGAGGTCATGGCCGGTTCCCGGTGAGTTGAACAGCT
CAGCTCCTGTTTTTCCCCGTCGGACAAAAACAGCTTAAGTGCATGTGTGTATCTAATGTA
ATCTCATGCATGGATCTGTTGTTGCAGGATAGCAGGACTCCAGCACTGTGGCCTAAGGCA
CAGCAGAAGGCTGGAGGAGGCAAAGGTGGGCAGTCTAATCTGGAGCACTTCTTTGTTAAG
AGATGACGATCCTAGCTTCCTACTGAGAATGCATGTTTGTGATAAAATGGTGCCACTGCC
TGCTGTGTGGGTTGTGGTATACTTGAGGGAGACCTAAATCCAGATTTTGTAATCGGTACA
CTATTGGCATTGGGCCGGTGATGTTGGAGGTTGGACACAATCTCTCAGTGCTATGTGTCT
GAATCCCTCAGTGTCCTGGCTTGTGCTTTAGTTTGTTAAGGGTTCAGTTCGTGCACATGG
TGGCATTGTTTATTTGATTTGATGCACATGTTGTGTCATGTTTTGTAATTTGTATTGTTA
TAAGAGTTGATGTGGCAACAGAGAAGGCTTCACTTTTGGTTCAATGCTAGGTTATCTGCT
GCTGTGTCCGGTTTTGTTCGGTTCACTTTTGAGATCACATAACAGCTTTAATTATGGAAA
AAGCTTACCTTCTACCGGTCGATCGCGCTCCTCATCCGCCGACTCTGCAACCGTCGGATC
GGTCATTGATCAGACGGACCAGACCATTCCCGCTTCTGCAGCTGAAACCGGGATGGCGTT
TGAACAACTGCGTCACCTTCACCAGCTTCGGATCCATCGACGGCGGGCGACGGGGGAGCT
CGAGCTTGGAGTCGATTCACGGATTCGAGCCGGGGCTGCATGGGATCTCCTGCGGCGAGG
GAGATCGAGGCGGAAGGCGACGGATTTGTTTGGGGGATTTAGTATTCGTGTCTCCTCTGT
TGTAAGTATGATGAGTCGGCGGACGTGGCCATTTGTTTCAGGATGTATAGCGCGGATCGG
GCGGCGAGCGCGACGCGACGGGGCTCAGGAATCAACCATGGCCGTCACGGCTCTGTGTCC
TCCACAGCTCCATCTCTGGCCACCCCCGAGACCTCCTATGTTTTTCGTTTGAAGGAAGAA
GATGAAGGAGACGCACCCTCCGGCTGGCTGCCCGTGGGGAATTGGAGATGGTTCGTCTCG
AACAGATCCGCAACTGAGTTTGTGCAACATGAACTTTGTTGCAAAAGTTTCTTCCGTAAC
AGTATTTATGTTGCAGAAAGACGAAGAAAACAATCTGCAACAAAACGATTGTTTCAGAAA
CTCGAACGTTGTCTCAGGAGTTAATGGGTCCAAAGTTTATTTTATGCAACAAAGCGATTG
TTTTTGTAACTTGACTATCGTTTCATGAATTACTAGGTGCCGAGCAGGAGCCCCGCGCGC
GGATCGAACTGCTACACGTATAGATCAGACGATTGTCCAGATGGCGGATGTTTACTATCC
GCCGGTGGACGCGTAGCGCTCCCTTTTAATTATAAAAAATAACAATAGATCTTTAGAAAA
GTATACTTAACTGGACGTGAACACATTTTAATTTTTTATATTATTCTTAAACTTAATTCT
CATCCTGCTAACTGTTATGTACTCATGTTTTTTCAAAAGGTGATACTTTGTGGTTTCTGT
ATTTTTCTGCGTGAGAAAAAAAGAAAGGGATAACATGATACAACCTGGTAGTGGTAGGTG
GTAGAAGAGTTCTCTTTTTTTTGTTTCCCTTGAGAAGCCGTGACACGACCCAATCATAAC
GAGACAATGGACATGAACCAAGTATTAGTTTATTTGCAACTACTAGTAGGTGCTCAACTT
CTAGATCCACAAAATTAAATGGGATGTAGTCGGGTCGGGCCATGTGGCTGAAAGCAGGTG
ATGCCAACACCAGATTTTTCCAAAGGAAGGCCAACGCTAGACGCAACCGCAGCTTGATTC
ATGTCCTGCACGGACCGATAGAAGCAGTTTCGAGCACAGATGCCTTGAAGCAGCTTGCTC
ACGAACACTTCTCGAAGATCTTTGGCGCACCGCAACCAACTGCATCTGCCTTAAAATGGG
ATGCATTGGACCTTGATCATGTCGACCTGTCTGATATTGAAGATGTTTTCACCCTGGATG
AGATTAATCACACAATTGATGATATGCCAACGGAGAAGGCACCAGACCCAGATGGTTTCT
CTGGTGGATTCTTTCGTACTTGTTGGGAAACAATTAAAATGGATGTCCTGGCTGCACTTC
AATAGCTTCACCGTATGGACAACAGAGGGATGCTGCGCGTCAAAAGGGCCTTGATTGTGT
TAATCCCCAAGAAGCCCGACGCCGATACTTTGCCTGATTTCAGGCCTATTTCTCTCCTGC
AAAACCTGATGAAGTTATTCTCAAAGATTTTAGCACGGTGGCTGCGTACGAAAATGAATG
ATCTGGTTAGCCATTGTCAAAGTGCATTCATTAAAAATCGAAGCATCCAAGAATTTTTTT
TTGTACGTCTAGAACACCATGCACCACCTCCATAAGGCTAAGAAACCGACTGTACTGCTT
AAACTAGACATTGCCAAGGCTTTTGACTCTGTCTCTTGGACGTACATCCTAGACATGCTT
CAGGCAAGAGGTTTTTGCGAGCGCTGGCGGGAGTGGATCAGCATGTTACTACGTACGTCC
TCTTCGTGCATACTCATATACGGCGAGCAATCTGAGTCCATCCACCATCAGAGGGGGCTG
AGACAAGGGGATCCTATCTCCCCCTTTCTTTTCATCCTTGCGATGGAACCACTACAACGG
TTGTTAGATCTTGCCACAGATTTCGGCGTGCTATCCAAGCTGCCTGGGAGAAGAAAGCTA
ATGAGGTGCTCTTTTTATGCGGATGATGTGGCCCTTTTCATGAACCCAAAAGAAAGTGAC
GTGAGAATGGTTAAGCGAGTGGTTGATTGCTTTGGGTCGGCGACTGGGCTATGAATGAAC
CACGCCAAGAGTTCTGCCTTTCCCATTAGGTGTGCTAGCTTGGACTTAGCAACCATTCTA
GCTCCTCTCGGCATCATGGTTAAAATGATCCCTACCACTTACCTCGGACTACCCTTGTCC
CTGAGAAATCTTACCAAAGCAGAGTTCGACCCTTTCCTATTGAAGTTTGCTAGCAGGTCG
GCATGTTGGAAGGACAATCTCATGGCTAAAAGTGGACGACTTGTTCTGCTCAAAGCCAAC
CTGATTCCGTTGGTAACTTACTCGATGACCGTGTTTAAATTTTCAGTTTGGGCACAAAAG
CAGTTGGCCAAGACTGCGAGAGCATGGCTATGGGATGATTCGGACTCCTGCACTGGAGGT
CACTGCAGAGTGGGATGGAGCCAAATCTGTAGGCCAAAACACCTCGGGGGGCTGGTAGTC
ATGAACCTGAATTCTTTCGGCATCGCCCTTCGCCTCCGATGGCTTTGGCTTGCCTGGCGC
AATCCTGACCGCCCATGGGTAGGATCTTCGATCCCGTGTGACAGAAAGGAGCGCTCCCTT
TTCTCGATGGCAACTAACATTATCGTTGGAAACGGGAAGACTGCACAGTTTTGGCACGAT
AGATGGCTGCATGGACAATGCCCCAAGGTGATTGCACCAACCCTGTTCAGAGTCACGGTG
CGTAAAAACAGATCGGTCCAGGAAGCATTATATAGAGACACATGGCTAGCTGATCTGGCG
AAGGACTAACGGAAGAAATGACCACCGAGTTAACAAATTTGGCGTCCCTGGTAGATAGCA
CAACGCTCACGGACGGGCAGTCAAACACGATCAGCTGGAGATTTTCTTCTAACGGTAAGT
ACAGTGCATGCTCGGCGTACGCGTTCCAGTTCGAGGGATCAACGCCGATGGATGGCTTCA
GGCTGATATGGTCCGTGTGGGCACCGGGAAATTGTCGTTTATTCGTTTGGACAACAATGC
TTGGGAAAATCATGACGACAGATGCATTGCTACGGAGGGGATGCGAAAATGAATACTTCT
GCCGGTTCTGTGAGCGGAGCCTTGAAACGCCAATTCATTTGTTCACAGAATGTCCATTGT
CAAGGAAGATTTGGAGCTGCGCTGCGGCTCAGTCAAGTCTGCCATCATTGCAGCCAACAA
TGTGGGATGGCCAACCAAGCTTCAAAGTATGGATGGAAAAGTGTGTGTCCAAAGCGATGC
CGGGGAAAAGGAAAGGGCTGTTATCTCTCACGCATCTCATGATTTGGGAGCTTTGGCGTG
AACGGAACAGGTGCATATTCCAGAAGGACTGCATGAGACAGAGTGCATTCTTACGTAAAA
TCAAGGAGGAGATCATCTTGTGGAATATGGCTGGAGCTGGGATCCCGTTTGATCCAGGCT
GAGGCCACTTGTTGTTTTGGTTCTGTTTTCCTTCTTTCTTTCTTTTCTTTCCTTTCCACC
AATCTTCTCCTTTGGAGCTTGCCCATCTCGGGCTCCTGTTACTTTCGTTGGTTTTCCCCT
CTAATTAATTAATTTGGTAGGCAAACTACCAACATTCCAAAAGAATAACTTCTAGATCCA
CTCAAAATGATGTTTGGTGGAAAGCTACACTTTGTGCTTTGTCTTTTACTCAGAAGCACA
TAACTTGTAGTTCCCTTGTCAAGGTCAATCAAGTTTAATTAGTGTTTGTTTTTTGAAGAG
TAAATTCCATTCTTTTACCCTCTCTTGCCATTTTTGACAGGAATACCCAATTAGAATTTT
TCATCTGTTTTACCACGTGTATCAAAACTCATATACTCAATAAATTTGTGCTACTAGACA
TATGTTCTGATGTTATTCAAACTTCTATCAGACACAAGTTTGTTATTCAAACTTGTATAA
AATGCAACACAAGTTTTGTTAAATAGGGTAAACCGGTTGAAAATCTCTTAAATGTGGCAA
TTCATGTTAAAATGTTAAAATGTTTCTTTTGAAATTTACTTTTTTTTAATAATTATAATG
CATTGCTGTGTAGCAGGTCTTTGCATTGGACCCAAGGAATCACAAACTCAATAAGGCTAC
AAAATAGCTCTTGCAGGTTGTGTGCCCTGGTTGCTTATTGGTCCCAAACGCATACTTAGG
AGAAATTCTTTTGCTTGGAGGTGGGCAAAGCAAAACCATGCACGATGGTGGATGATCAAC
ATGACTAGCAATGATGATACACGAGGATGATTACTACAACTTGCAAATATAGTTTGTGAG
GATCGAAATTATCATTGTGTTGCCACGGTTCTTAGCTTCCCTTTCATTTTTTTTAGAAAA
GGTGGTTAAAACCCCCGGCCCCTGCATCAATCAATGCATACATTCATTTTTATTTATTAT
TCAATGTAGGTCTAACAAAAACATACATAAAGACATCCGAAAAGCCACCGCTCACACCTA
CAAAACTCGATAATGTGGAGTGCTCTCACTCCCCGTATCTAAAACCGATCCCGTCGCCGA
TCCATCCACATAACGCATCGGAACCCACAGTCGGTGGAGCAGATCTAAAGCGTACATCAC
ATGCACACATTTTAGACGTCTCATCATCATCGAACCGTTTACCCATCTTTAGGAGAGAGA
TCTTGTCACACCCTGTGTTTGTACCAATTTTGCCACATGATGTTTATATAAGAATCGGTA
CCAATTAAAACTTTTTGCATGTTTGTGATGATTGGTTTTTGTTGCAACTTGCTTGTGTGA
CNNNNNNNNNTTTTGAATCACTATAGTTGTTCTCCTTTCTAAAACCTACCTCCTTGACCC
CAAGCCCTTGTCCAATGATCATGCCATATGAATAGAACCAGAAAACCATTTTTATAAATT
ATTATTTTTAACAAAAGGCATTTAATCATTTCTTGTTCTCCAAAACCCCTAATTGAGATT
TGCATTGCAAGTCCACAATTTAGGAGGGATGTTTTACACCAAAGACTTTATTTGAATCCT
ACTATCCAAAAGACTTCCCAAAACCACAAAATAATTATTTTGAAAGTTATTTTCCTATTT
TATTCAAATAACTTTTTTTGAGGCCATAAATGGTATTTCATAGGGAAAAAATATTTTCTT
GCTTAAAAAATATTTGATTTTTTAGAGAAACTCATTGGACATATATTTTACATACAAAAG
AGTTTCAACACATGATCATGTTTAAAATATTGGACAAAACCCCTCAAAGCCCTTCATGCC
CATTTCAATTTTTTGAAATATTTCCATAGGAAATATTCTCAATAAATTCTAGGAAAATTG
TAGCAAGTCTCAGATGATAAATGCGGTGATCCTGCAAAGTTTCATCTCAATCAAAGTTGG
TTCAATCCACCTATTAATCCCAAAACCCTTTCTGTCGAGAACCAAAATTGAGAAACTTTA
CATGGCCAAGTTTATCCAATTGATACCAAACTTTACAAGAGTGATCCAACCCCAAATAAG
TATGCTACACCAAGTTGTGCATTTGTGGGGGTTGATTTGATCACCTAGGTCCATAGAAAC
ATGATTCTGTCCATTTTTAGGGTTTTTCACGTCTACATTGTCAACTTCGCTCCAATGATC
TCAAACTTGGTGAATCCTACTGATTTTGATCATTTATCCTATTAAATCTCACTGCAAGTG
GTGAGGTATACCTTGCTCAAAGCAGCATCAAACACCTTGTGGTGATTTGGCAAAACGGCT
ACTTTCACCCCTTACACTATTCTCCTTCACTCCAAATTTTTAATCTTCACGTGCAATAGA
AAGATCCAACTCTGATTCAACCGTGGGGATAGAAAAAAACCCCAATTACCCCTCTGGTCC
ACCTTGACAGAAGCCCTTTTCCTCTCTTCTTTTGACCACATTCTCCCTCCTCGGCTCCAA
AGCATCCAAGGGGCATCCCTACATCCCCCAGACACTAGAGGACAAGGTGGGACATGCCAA
AGCATGCCACCATGCCGTGGCATGCCATAACTGCGCTCTCGACGCCCTACAATGCGCACC
CGCACCATGGAAGGCCGGCCTCGACCAGCTTTCGACCCTTCGACTGTCCCCCTCTCCCCC
CTCGATGACAGGAACCCTCGCCATGTCGTGCCCCTCCTTTCTCCCCTTCTCCTCCTGCAT
ACGACGCGTGCGCCTGCCCAACCGATTCGATCAAATGACGCCCGCCACTGCAGCATGCCA
GGAGCGAGCTCCCGCTCCTCCTCGTTCCCTTTCCAA