Map Locations of contig_136338 (8019 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_136338

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5505 1 1039 bp AK375972 Available Available None





CDS Structure of MLOC_5505






Contig Sequence (8019 bp)

>contig_136338 8019 assembly3_WGSMorex_rbca.fasta
GAGATTTAAAGTGAGATGGGGTGAGACTTAAAGTGAGATGGGAGACAGACGAGAAAGGGA
GCGGCGGCAGAGACTCTGCTACTCACCTACGAGGGGGAGGTGGTTGGGGACACGACCTTA
GGTGAGCTGCTTCTGCTTTCGACTGCGATCACTAGTCCGCCAAGTCCGACGGGCGAAGGA
TTAGGTGAGGGCGGGTTATGGACACTTCGAGGCGGCCGATGGAGGCGCTGGCCTTGTTGG
AAGGCCGGAGGAGGCGATCGGTGGCGGCTCGTCATGGCTGCAGTGCACAGGAGCGGAGGC
AGGTGTTCGGTGACCAGTCGTGTGGATGCAGATGAGATCCAGTTGTGATGAACAAATAAC
AACAGACCGTGATGCTCCTTTCCTCTATCTGAATTATTTGCGGATGGGATCCGGTCGTGA
TAAACAAACAACAGCAGGTCGTGTTGCTCTTTTATCTATCGGATTTTTCGGCAATTTAGA
TCCATTAAGGATGAGATGGACGAGGCCGTGCTGCTCTTTGGCCCCATAAGCTCGTCTGAC
CATCTCATGATTTATGGATGTGTGCTCCTTTGGTGGTTACTTGATGTTGATTGAATACTT
CTCCTAAGCCTTACCTGCAGATGTTTGCGAGCCTACTCCTTGGTTTGGGTAAGCTACAGA
CCTGCGACATATCATTTACCTTTGGTTAGTCATTTGTTTTTGTTCTGCAGAGATTCGCAA
CTTTTTTGTTGCTTAATGATGTTTGCAGATCCAGAGTAAATATGTGAGCTCAAGCAAAAC
ATTTGTGAGTTAGTAACATGCCTACTTTATTTGTTGTTCAGATAGCTTAGATTCGCATAA
GTCTCCCTACCGCTCGAAGTGCCACCCATCGCAAATGCATCAAAATATATCATTTGTAAT
GCTTTTTCCTAATGGGGCCAAATTATCTGGTCACTGCAACTTCATGATAGGTAAATTAGT
CCTCTAGAAGTGTGATACTTGAATTTATCTATTCATTTTCAGTTAATCTTCAACATTGAA
TTAAATCTTTTTAAGAGTTATAATGCTTTATTTGTTGATAACCTATAGCGTAACGTCTTA
TTTTTGCTTGATTGCCAGATTTTATGAACTTTCCCTTGGTATAAAAAAGAAAATCATTTT
ATTAGCTTTTGGAATGTTACACTTTGCTTTAATTGCTTTGCTAAATGTATGCACTAACAG
AATTTCGATATCTCGTGTCAAGTAACTGGGACTCGATTGGTGGTACATTTGCTCACTAGG
TTCATGGCTATTCATCTTCCCGTTGCAACGCACGGGCACATGTCCTAGTAAATTATCATG
CGAAAATTCATTCTTTCCGGTGCAACGCAAGGGCATATGTACTAGTACTAGTAGATAAAT
AAATTTGACAGCCGGTCGACAGAAACTAGGCAGAACCTCGCGCAGAAGCTGTTGGGTATG
AATTTTATATCCTTGTTCTACACCATCCAAGATCATTCGAATAAATTCACTAGCAAATGT
TGGCACAAAATCTCATTTTATTTCACGAAACTAATACCCGTACTCCAGCTCTAAGAAATC
AGCCCAAAATTACACAAGCATTCGTGTGGCAGCGTTATATTAATAGCACAACATATATAC
TAGCAGTAGAGAATAGATCCTCAGAGGCCAAGGAGCTGGCAGTTCTCCCAGAGCGTCTTG
GCGGACCGGCGGAGCTGCGCGGCCTCGGCCTCGGTGAGGTCCATCTCGGCGACGCCGAGG
ACGCCGGCGCGGCCGAGCCGGGCGGGCAGGCTGAGGAACACCTCGTGGCCGTCGGAGATG
CCGTGGAAGCCCGCGGCGAGCACGGACACCGGGTGCACGCGGCGCTGGTCGCGGAGCAGG
GACGTCGCGAGGCTGGCCACGGAGTAGCCGATGGCCCAGGAGGTGTACCCCTTGAGGCCG
ATCACCTCGTAGGCGCCCCCCACCACGGCGCGCCGGATGCCCTCCAGCGCCGCCTCGTCG
AAGCTCCGGTGGCTGTCCCGCAGCGACTTGAGCGCCGGCATGCCGCCCACGCTGATGCTC
GACCATATCGCCACCGAGCTGTCACCGTGCTCACCCACCATGTACGCCTGCAACCCAATT
CGGTATATAGCTGGTTACTTTTCTGAAACATAGCATGCCGTCCATCCAGATCCAGTGTAG
CATGCAGCTGGTTAATTACATACCTGCACGTCCTGCGCGCTCACGTCGAGGTGCTCGGCG
ACGAGGAACCTGAACCTGGAGGAGTCGAGGTTGGTGCCGGAGCCGATGACGCGGCTGGCC
GGGAACCCCGACAGCTTCCACGCGACGTAGGTGAGGACGTCCACGGGGTTGGACACGACA
AGCAGCAGCGCGTCCGGGGAGTGCTCGGCCACGGGCGGCACGATCTTGCGGTACAGCGCC
ACGTTCCTCTGCAGCAGGTTGAGCCTGGTCTCCCCGGGGATCTGCCTGGCGCCGGCCGTG
ACGACGACGAGGTCCGAGTTTTTCGTGACGGCGGCGTCGGTGCCGGAGACGATGCGGACG
CGCGGGAGGAACGCGGCGGCGTGCTGCAGGTCGAGCGCCTCGCCGCGGAACTTGTCGGGG
AGGGCGTCCACCAGCGCGATCTCGTCCGCCAGGTTCTGCGTGAGGATGGTCTGCGCGATG
GCCATGCCCACGTTGCCGGCGCCGATGACTGACACCTTGGTGAGGCGGCGGTGCGGGGCG
GAGGAGGAGGTGTGAGTGATCGGGCAGCCGTCCGCCACCGCGCGGAAGAAGCCCGACGAG
GCGTCCCCGGCGTCGAAGCCCAGCTCCGACAGCGACGAGGTCTTGTGCATCTTCCGTGGG
AATGGGAAGGAACTAGTATAATGCAGGTCGATCGATCGGAATCAAAGAAGAGATTTAGAA
CTGGGATTGGATGATGAACTCGATCGTGTTCTTGCCTTTGCCTTCCTGGTGGGGATGGGG
ATGGGGATGGGATGGGAATGGGGATGGGGAGGAAGCCGAGCAGCTCCAGTTTATAAAGGG
AGACGAAACCGCTCTCCGGTTACCGCTTCAACGGCCATGGTCATGGTTTTGGACTAATCT
GATCACTTTTCGACCAAGAAAAGAGAAAAACATTCCTTTTATGCTAGTAGTCTGTTGTGT
TGTCTTGGAGACAAAACTAACTTTGAAAAATAGGAAAGGATTCAGAACAATTTATAGGAG
AAAGTCTACTCTATATGACATTTACCTCGCCGGAGACGAGGGCCACCGATAGTCGTCAAG
TTCAACAATACAAAGTGTAAATCTTTGGTTTACGAGGAAATCGATCATGCTTTGCCTTAG
ATCGTATCGATAGTCGTCAAGTTGAACAATGCACTGATGACGTGGTTGAAAATTGCGTAC
GTACGTACGTCCATCTTTGAAAATTGAAAGTAAATTTACTTGATGAGAAAGGCTTCAGTA
GTTTGGCGGGAAACCGTGGACGTGGTTGACGCAGCCTCCGGTATATGCATGCATGGGGTC
CGTGCATGGTTTCGTTCATCGCTTAACCCATCGGTCGACGTCCACGTACCTCTTTGCTTT
AGTTGATCGATGGACGGTTACACCGTTTCTTGGTTACGTCTCCATGTGGCCGGCAGTACT
TGGGGAAGAAAGAAAGAACCCACCGGCCACCACAAAGTCATCCAAACGCACGGCACCGTA
CGGTCCATCAGCACACCATTGTCGTACCGAGCACTCGTATTGGTTGCTTCTCTTGCGTTC
CAGCACTCCGGCAACAGTTTTCAGCTTACCTTTTCATTGGTCAACATTTCTAGATTTGGT
TTGAGTAGCTTGCAAAAAAAATCACAACAATGCACAAAGTATAAAAAAATACCATTTTAC
TAACAGTTCGCATTTTTTTTTACCAGTTCTGAGTTTTTTTTTTACGAAAACACTATAAAA
ATCGGTTGAACACAATTTGACATGAAATCAGGCTGTTAACCTGACGTGGCATGGAGAAAC
GGTTGGATGAGATTGGCCTTAAACGACCCGATCAACACCTCTTCTTCCTCCCTGAGGGCT
TGTTCGGTTCCATAAGATTCCAAGGGCTTGCAAGGGGATTGAAAGTGATTAAATCTCCAG
CAAGCCAACACCCACCTCAAACCCCTTCAATCCTTCCTAATCCCCTTGTGGAGTTGTGGT
GGGGATAAACCGAATAAGCCCTGAGTGGTGTTTGGCATTTCGTGGAACACCTACAAGGCG
CAAGCGAGTGGTTCTATTGGTGCGACTCAGCAACAATCGTCACGGGGAACAGGGTAGGGC
GCGACCGCCATCAGGGCTTGGTCCAGGGCGGCCGAACAAAATCCACACGACATGTTGATG
TGTTCTCTTTGTTGTGGCATCGATCAGAAGTAGAGCAGTAGCAACTGGTGCGGATAGCTG
TCTCCCCATGTCGCCGTCTCCCTACAACCTGGCTCCATCGACGATGAGGTGGTGGACGTC
TGCGGACGCGTCCGTTTGCGACCGTGGATACCGATCACCCACTTTTTCTCCTCGCCTATA
GTGTGCTCCTCAAATGTCCACCTCTTGTATCCATACAATCCACTATGTAGATCAATATAG
CAACTTTTTTTTGAAACAGACAATATAGCAACATAGATCAACATGCATATATGGCATAAC
TGGAATGTGACTAAAGAAAGTATTTTTACAATCAGACCCAGAGGAGCAAGTTCATCACCG
AACATATTAAACAAGATACAAAATACATTCGATAGCGGAGATTGACGGCGGACATCACCA
TTTCCTCACAAGGCCCTTCCTCTTGCGGTCACTTGAGCGACGGTAGTAGTCCTTCGTGTA
GGCGTCCATAACAGAAGGTATGCCGCCGTCCTCATGATTGCTTGTCATGCTGTTGTCCAG
CGATGATGAGATGATGCCGATGAGAATTGGACGGCACGAGCATGCTCCTTCCCGTGTCGT
GTCCCCTTCGTCTTGGTAGTCTCCTTCTACATCTAGAGGTCCTCAAACTCTTCGGTGCCA
AGTCGGGGCACCTTCACGTTCTTGCAGTGGAGGTGCTTTGTGTCCATCTCCATTGTGGTC
AGCGACAGACAAAGGATCTCGCGCCGGAGCCGTTCCTCTGGATCGACTGGCGTGGACCTC
GCACGTGTGCGGGAGTAACCAACATCCTTCACTCTCTATGGGACCCGTTGCCTCTCATGG
CGTGCAACTTTGGCCTCAAATTCCGGCATCCTCATATGTTGGGTACGAGCACTCAGTGCT
GCCTGGGAGGAGCTGGGGACGGAGGGGGACGACAATGGCGCGTCCGGCGATGGAACTGCA
GCAGGGTCGAGGCGTGACTGGCCAACGCGGTCGATGGCCTGGAGGTGCAACTCACATGAG
AGGAGTTATGAAAAGGGGACATGGAAGATAAACAATGGAAATGAAGCGGAGCAGTTGGGA
GGGTGGACTTTGACTAGGGTTTTGTTTAGGATAGGATATTTGTAATGTCGGATGGATAGG
CATGGACCGAACGATGTGACAGACACTTTTGGGCTTCCCCATATCCGTCCTAAATATGAG
CTGGGTAAGGGGGTGCCGGACAGCCAGCCCGCATGTATAGAAGCGGTTTCTGCGGTCAGC
TTTAGTGGCAAAAGGTGACCAGGTAGGCCACCCGCCGGAGATTCAGGGGCAATACATGGG
CTACGATTATAGACGCCCTTAGAATTTTGCCGTTTCGGTCATCAAAATCTTGACTATTAT
TGCACATGTTTTTTGTTCGGGTGGAAGAATTGTACATCTTTTTTGCGAACGAAGAACCGT
GCATCTGCCCTTAAAAATAATTGTAATCTTCCAATCAAATTCAAACGCGTGATTTTTCCA
AAATCCAATCTAGAAATGTGTGAGTGATAGTTAAGATGGAGAGCCATAAACGTGTTGCTT
GGTAGGCGGAGAACAAGACGCCGGCAACGGTATGTCGTTTGTCGTAGCTTAAGAGGAAAT
CGATCGTGCTACTATGCTTTTTTATCATACCATACCGGCCGATCGATCTCCCACTCACTG
GAGATCTGCACTCGATGTGCGTTCGGAGCGACAAAAGCATCACTAGTTTGGCGGGAAACG
GTGGACGCGATTAACGCGGGCTCCGGCATGGAATTAATCAACGCATGGTTTGGCAATCGA
TCGACGGCTAAATTGTTTCTTGGGGAAGACGCCCAGATCGATGTGGGGAGAAAGAAAGAA
CAACACAATCCTACAAAAAAACAAAAAACAACAAAAAAAACACAACCCAACCGGTGGCCA
CTGCTCAAAACGGTGCGTGCTCCGTTCCTTCCTGCCTTCTTCCGCCATGCCTGCTACTTT
TGAGTTTTGACTTTTCACTTTTTCATTGGTCAGCCTTTCTAGAAGTAAAATGTCCGAAAC
ATACCGTCAACTCTTGGAAGAAAGCTGAATCGAACCCTGAATTTTCAGTCCATAAAATAA
GCACAACAAACTCTACCACCCCGATCTATTTTTCCGATGGTATTCGCTCATGTAGCAAGT
CAAGTCGGGCCGGACCATTGGACCGGTTGCACGCACGCCCAGTATGCTATGGTTTCTATT
GTTTTTTTTTCCTTTGGGTTTTCTTTATTTTCATTTGTTTTCTTTTAATTTTTTCTTTGT
TCGCTAGTTTTCTATGGGTTTTTCCGTTCTTTGTTACACTTTTAGTTTTCTATTGTTTCT
TTCTTGATTTTTTGTATTGTTTGTTTCTTCTTCTTTTTGTTTATTCTTGGGTTTTAACTG
ATTTTCTTTTTTACTCTTGCCTAAATTTTTCGCAGTTAACAAAGTACATTAATACACACA
TGGAACATTTTTTATGAAACACTTACATTATGTATATTTTATAAAATACATGTTCTCAAC
ATTTTTTGAATACACCATAACATTTTGCCAAATGCACATTTACCATTTTCTAAATGACAA
TAAACATTATACAAAACTATACAAATTCTTTTTAAATTGTTTAAAAAGTTTTTCCCATTT
AGAAAAACAAAAGAGGACATTAAAATTTTGTTCAGTGTTTAAATTTTGTTCCATTTTATT
TTAAATGTTTGTGTTTCAAAAAGTGTTTACTTTTATAAAATTGTTTCTGTTTTCAAGAAG
TGAATATTTTTTCAAATAATAATTCAGAATTTTTCTCACATATTTTTTTAGGTTTCAAAA
GTAGTCCCGTTATGAAATTATCAAAAAGTGTTTGCACTTTAAAATTTTATTCAGGTTTCA
AAATATGTTTCCATTTGGTCAGAAAAATTTTATGTTTCAAACGGTGTTTGATTTTTCCAC
ATTTATTTTGTTTTTGAAATTTTGTTTGTTTTCATAATTTTTTATATATTTTCCATATTA
GTTTGTCCTTATTTTTTTCCTAATCTCTATTTTCCAGTGTGTGTTTAAATAATTCAGCCC
TATCAAGAAATCACTAACAGCCATTTATTCTAGCGGCATGCGTGAGGAGTTGAGGAGCAC
AAGGTCATAAGCTTGACTCTACAGTTTGTTTATTTCGTGTGTATTATTACGTACTTCATG
TATTTTTACTTTGCATACGACAAAAAAAAAGAATTGAAAAAAAAGTCTCGCTTCGTTACT
GTTTGGCCGGCTCAATCACGTCCACACTCAACTATTCCGGGATTCAAGCTGCGACGTCGA
CAATCTGTGTTTGGAAACGCCCTCAAGTTTTAGAATAGACCGGGATCAAAAAATTCGTGT
GCTGATTTCAGAAGTTGAAAATTTAGGGTTCAATTTAGTTTTTGTCTATAAGTTTGAGGT
TTATTTTAGACTTCTACCTTTGTAGAACTTTGCCACGCGTTTTTTTCTCTATCAATTTTT
AATTTCCGATGCAATAAATGTACCATCCTGTGACAGCCCGATACCGACGTTCNNNNNNNN
NNNNNNNNNNNNNNNNTTTTCGTCGTGTGTCTATTTTCTGTTGTCGCATCATCATCGCNT
CATGCGCATCATCAACATTGCATCAGCATCTCCGTGCCGCCAGTTTTCANNNNNNNNNNN
NNNNNNNNGTTGCTGGTTCTCGTCGTTGTCCGTTGTGAG