Contig Data
morexGenes
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Map Locations of contig_136336 (6308 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_136336

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5503 4 2703 bp MLOC_5503.1 Available Available LOC_Os05g10210.1, FRAME:+2, EVALUE:1e-85, 13105.m01096 protein HAD superfamily phosphatase, putative, expressed





CDS Structure of MLOC_5503






Contig Sequence (6308 bp)

>contig_136336 6308 assembly3_WGSMorex_rbca.fasta
ACTAGAGGATTACTAGGGACAGTGTCTTGTCTATGTATCGACACAAGTATTGTGTTTCCA
ATCAAATACAATTATAGCATGGATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCTAGGGCATATTTCCAACAGGAGACGCCCCGGTCGCCTCGT
TCGGGGAGGGCGACGCGCCCCAACCAAACAATAGATTACATGCCTCATAAACCTTAAACT
CTCATTGCCTATCATTAATCCCCTTCAACCAAACACGTTGTTGGAGTTACATGATGCATT
CATCTCCCATTTGTTGGAAAACAACCATCACATCATGCCCGTCCTATCCAATCACTGTCG
TGCAATTCTATTAATTAAGTGTACTATCCTGCACAAAATACAATAATGCTAGACCTACAA
AGATTTACAAAGATTTATTTAACCTTTCAAACTAATTTTTCTCTCCCACCTTAATTTTTA
ATGGGTGTGGGACCCTTCATCCCCAAATTACCAATCATAATCTTACACATCAGTTTGTAC
GTAAAATCTTTAAGTAAACCTTTATAGATGTACTCCCTCCGTCACGGTTTAGAAGACACA
GTTAAACTTGCGTGCGATTTCAAAATAGACAAAGTTTAAGGCACGAAAACAATTACTTCT
ATTAGTTAGTATTAGTACTACTCATGCATACGCCTTCCCAATTTGCTGCTCATGCATTAG
TACTAGTATTTTCTCAGTTGATTAGGCGCATTAGCATCTACACGTGCTACATCTCATAAT
CAATCATAGACTATCTTGGTCTCAGAGATTTTTCAAACGTGCATTTTAAACCGTGACGGA
GGGAGTAGCATTACTCCACATAATACAACCCCGTGACTGGCCGGCTGACACCAACCTTGT
CCCTTTTGCTCGCACCATATGCGAATACGACCACGCGGATGACACAAACCTGCATGTCCA
TGTGTGGTAAACAGTCTTGTTCTGGCGAAGATACCTTTAGTAATGTGATCACAGATGCTA
CACCGCGAGCAAGAGGGTGAGCACCTAGAAATGTACTCCCTCTCTATCTAGTTCTTTCCA
GTTAATTATAATTATTTAGGTATATAGAAATAGTACTGTTCTGTATAGGCAGGCAGGCAG
GGAATCTCTCCACCAAAATCTGTCAATACATTGACACGGGGAAAAAACCATGAACGAGTG
GCCAAAAACAGTGAAGAAAAGCTGTGCAGTGATTTGCATCGTACGGATGTCGCCTCGATC
ATCGGTCCGACCGCATCTCTCGACTGGATCACATCGTCCACAGCAAGCTTATCCCGTCCG
GTCCAATCACAACCGGGCGTTCCTACGATGTTATCTTCCCAACGTGTTCCACGCTCGCCC
TGAAACAGACCCCATGGATGACACAAACCTGCTTGTCCTTCTTGCAACAGAAACCTATTT
CTTTATGAAGTATGGATTTCCATCAAGCTACCACACCTTGTAGGATACGGATAACGTTTT
TGGAGGCCGAGCTCCACCAAGGCCTTCAAAAGAAAAACTCAAAATTCATGAGAATTTATA
TTTTTATATTTCAAAATATCTGAAAATACGCAAAGATAAATGAAGGCATAACCTACAAGC
GTGTAAATGTTCAGGGCAAAATATGTTGAGATGTGGCCTGTGTAAAAAAGACAAATCTAG
TGCTTTTTAACCCACAATACTATTCATCCATTCAGGTCATGAATTTGTTTTTTTTATACA
TATCGTATTTCAAGATATTTCATCCTAAAAATTTATACACATACACATAACATCCCTGTT
TACTTGCACAGTATTTTTCAGATTTTTTTGAAACCAAAAATTTTGAATTCTGAATACTTT
AAAATTTTCGAGCTCCAGTGAGCTCGGTCACCAAACGTATGTTCTCTGTGGGATATAGCT
TCTCTACTCAAGAAGCACCAGGAAAAAAAACACGCGCACACACACTAAAATGCACATGTC
CAGGATGCTCGTCAATGTGTGCGTGTTCTGTTGTGCAAGTGCAATATGCATTCTACCATA
TATTAAAAAGTAGAATCGGGTTTGCTAAACATTGTACCGGGAAAAAATTTGTGCGTCAGT
CACTTTTCCACTTCGCACAAAGCCGAAGTCGGGGATGACTTGACGAGCAATAGCGGCGAG
CGTCAACCACGGTGAACCCAAGCCAGTACATTGCTAGAGATGGGACGATGCTGTGAGTGG
TAGCGAGTTGTGGCATCCCAGGCAAAGGCGAGGAGCCAGGTTGACGGTGCGGGTCGAAGG
GGGAGGGGCTTAGAGGGATGGTCATGACGGTGGGGGTGAGGGAGGGGCGGTTGCATGTAG
GGCGGGGCTGCTCGTGGTAACGCATGCCAACCATGGGCGGTGGAGATCGGCAATTAAGGC
TAGGTCGAAGGTTGACACGTGGATGAAGAAGAAAGGGAGGACGAAGGTGATCAATGGTGC
AATCTTGGTAGTACGATATAGCTTCCCTACTCAAGAAGCACCGGGGACAAAGCGCGCGCG
CACACACACTAAAATGCACATGGCCAGGATACTCGTCCTCGTCATGGCAATGTCTGTTTG
TTATGTTTTGCAAGTGCAATAATGTGCATTCTACAATACAAAAAAAATTGGGTTTGCTAA
ACATTATTTACTTGTGCGTGAGTCGCTTTTTCCGCTTTGCACAAAGCTGAAGTCAGGGAC
AACTTGACGAGCGATAGCGGAGAGCGTCAACCACGGTGAAGCCGAGCCAGTACCTTGCCA
GAGGTGGGGATGACGCTATGAGCGTTAGCGGGTTGTGGCAACCCCGGCAAAGGCGAGGAG
CCAGGTTGACGACGCGGGCCGGAGGGGGAGGTACTTAGAGGGATGATCATGACGGTGGGG
ATGGGTGAGGGGTGGTGCTGGTAGGGCGGGGCGGCTCGCGGTAACGCATGCCTGCCATGG
GTGGTGGAGATCCATGATTAAGGATAGGCCTAAGGCTGACAGGTGGATGAAGAAGAAAGG
GAGGAAGAAGATGAACAATGGTGCAATCTTGGCAGTTGGATAGACTTTTGACGGCCCGAA
ATTGCGACTTACAGCAAAACATTTTATGTTCCTCAGGAATGGACGGTCCTAATAAAACAC
TTAAGAGCATCTCCAACAGACGCCTAAAAAGTGTTCTGCGCATTAAAAGATTCGTTTTTT
GGACGTCGGACAGCTCCAACATACGCTGCAAAATAGTGCGTGCGCTAAAAAGTTTTGGAC
GCGCGCTGAAAAGCGCTATCGCGCGCAACATATTTGGTGCGCCGCGCGCAGCAAACTCTG
TGCTGCTGCAGGTGGGGTCGCTGGATTTGGCTGGATTCGGCGCCCCACTAGCGCGCTTCT
GTTGAAGATACTCCGGTCCCCGCGCTTTAAAAATGCTACAGTGACGCGTTAAAATTTTTA
TTGAATGCGATATTTTTGTGCTGCTGTTGGAGATGCTCTAACATATATGGGCTGGAAAAA
AAGAGCATCCACAGATTAACCCCTGACTGTTGTGCAGAATATGAAATTATGAATGGTAAA
ACTGTACATGGTAAAGCAGGAAAATAATGTATCACATCGTCCCCAACAAAATGTCGCGCT
CAGCGTGTTCCACGCCCTGTGATTGAGACCATACCCCTGCTGTCTTGCGTAGTTAATTTC
TCTCAAGCTCACACCACGTAGGACGTAGCTTTCCTACTGCTAGTTTTCTGGTGGAATTTC
TGTCAATATATGTTGCTAATTGTGCAGTAGATCTTGGCACCACAGGAACGGGGCTCTATT
TAAGAAGCCACCCGCCACACACACTTGACAGTGCAGCTGAGGAGGCAGAGCACCACAGGG
TAGCTACCAGTAGCACATACACTAACAATGGCGATGGCAAGGGTGCCCATCCTCGTCGCC
GTGGCCCTCATGGCCGCGTCGGCCTCCTGCAGCGCATGGGATCCCACCATCCGGATGGTC
GACGACGCGGTGGCGCCGCTCATCCACGCGCTGCGGCCGCTGCTGGGCTCCGGCGGGCAG
CTGGGGAGCCGCGGCGGCGTGCCGTGCGACAGCTGGAGGCTGGGCGTGGAGGCGTACAAC
GTGCGGGACTGGAAGACGGTGCCGGCCAACTGCGAGGGCTACGTGGGGCACTACATGCTC
GGCAACCACTTCCGGCGCGACTTCAAGGTCGTCATCGACCAGGCCATCGCCTACGTCGAC
GGCCTCAAGCTCGCCGGCAACGGCAAGGACGTGTGGGTCTTCGACATCGACGAGACCACC
CTCTCCAACCTCCCTTACTACGCCACGCACGGCTTTGGGTACGTACAAGTACTTACACAC
ATTATGCATCGTTGAGTATGCACTTCTGTATGACTGTTTATCCGTATGTATGTCCACATT
GTATGTGCTATTTGTTGCAGGTCCATTTGAGCGGATATGGACTGGTGTGTCCGTTGAGCT
AAAGTAGAAAATAAATTCTAACAGCGCCATGTTAATGTTATCGAAAATGCAATACATATA
GTAAAAAAAATTGACGCCCCATGCTAAGCACTCCTTTCCAACCAAAATCAACCCCCGACC
GTGAATTACAACAACCCGCCACTTCAAAACGGGCACGTGAATTTCAAAAAAAGAAAAAAA
AAAGGCATGTAACTACAAGTGGGAATAGAAAGGCATGTATGTGTTGGACGTGTTGGAGTT
GGACATTATTGGTGAGGTGGTCATCTCCAGTCCAATCACAGGGAAATCTAGTAGGACCAT
ATGCCGATTGATGAGCAAAACATGTTATATATCTATGCTAATCGGAGATAGTGATGCGAT
GTGCATGTGATGGCCAGAGTATGTAGGCACGAATCTGTCCTAGATGCGCTTTGGTACACC
CCTTGGTTTTTAACCGTCCTTATGGATAGATGTTAGAAGTCACAACATCTTGTTCATGGT
ACATTCATGCTAGCTAGTACAACACCATTTTTTAGTTTGGAAGATTCTCTTGAGCTAAAT
GGAGACTATAACTTCAAACGTACTAGCCTTATATATAGCGTTCGTAATATTACTGTATTT
CTGAATACTCCGAAATACCTATCTAAAAATCTAAAAAGCTTAGATTTTTTTCTTCCGATT
TATGTTTATGTTGATCTAAAGTGCTTTTACTAGTTTACCATAGTGAGCACTGGTCGAACA
TGGCTATGTTTCTTCAGTATTTAAATCTACATACTACTTTCTTCGTCTCGGTTTATAAGT
CATCTTAGGTTGTGCATCGCAACCAAGACGAAGATGAAAACAAGAGAAATTAATGTTAAT
TTGCTAATTAATACCATTGCATGCAATGAATTGACCAGTGCATGTCGTGTTAGTTAGCCT
CACGTCATTAAAAACATACATGCCCCAAATCCCTTATTGGTTGATTCCTTTATTCATGTC
AAAAGACAAGAAACAAGATGAAAGTTAATGCACCGTGCCTTAGTATTTTAGAATTATTGT
TTTTCTTTAGATGACTTATAAACCGAGACGACGGGAGTAGCTGACATCACCGTTTATACA
CACGCGCAGGGCTAGGCCATACAACGCGACGAGCTTCGACGCGTACGTGCTGGAGGGGAG
CGCGCCGGCGCTGCCGGAGACGAAGCGGCTCTACTACAAGCTACTCAAGGTGGGCATCAA
GCCGGTGTTCATCACAGGCCGGACGGAGGACAAGAGGGCCGTCACCGTCGGGAACCTCCG
CAGCCAGGGCTTCTCCGGGTGGATGAACCTGACGCTCAAGCAGCACGGATTCAAGGGCTC
CGCCATATCCTACAAGTCCGCCGAGAGGAAGAAGCTGCAGGACGCCGGGTACGTCATCGT
CGGCAACATCGGCGACCAGTGGAGCGACATCCTCGGCGCGCCCGAGGGCGCTCGCACCTT
CAAGCTGCCTGACCCCATTTACTACATCGCCTAGGTCGGCTGCGGCCATTTGGTTGCCCC
ATGCTCGTGCTCCACGAATAATAATCAAGCTCCATGCTCTCTTGATACTCCATGGAGTAA
TTGTTATCTGCATGCTCGATGCATCAGTAATAATCCACTGTGTTTTGTTTTTTTGACGTG
ATGATAGTCCACTGTGTTGTTGCTTTTCTTTGGGAATCCGGGGGCTGTTGTTGCTTGTTG
CATGTGTTCTTATCCGTCGTAATTTCGTTCTTGAGAATTGTAGTGTGACGTGTATCGGTC
TTTTGACTGTGATTGTTGTCCTACAAACTACAGTGGTATCAAAAATCGTGTAGAGGAACA
GGGGGGGGGGGGGGGGGGGGGGGGCGAAAAAGCGCAACACTACAACAACCGACGGGAAAA
ATGTACTT