morexGenes - Barley RNA-seq Database

Contig contig_136333
Source Contig contig_136333
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136333 (7766 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_136333

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5498	1	1343 bp	MLOC_5498.1	Available	Available	LOC_Os05g06280.3, FRAME:+2, EVALUE:1e-23, 13105.m00669 protein ATKINESIN-13A/KINESIN-13A, putative, expressed
MLOC_5500	1	467 bp	None	Available	Available	None
MLOC_5501	1	503 bp	MLOC_5501.1	Available	Available	None
MLOC_5499	1	522 bp	None	Available	Available	None
CDS Structure of MLOC_5498

CDS Structure of MLOC_5500

CDS Structure of MLOC_5501

CDS Structure of MLOC_5499

Contig Sequence (7766 bp)

>contig_136333 7766 assembly3_WGSMorex_rbca.fasta
TTTTAAGTTTGATCAAATTTATAGAAAAATATATCAAATTTCATAATATCAAATCGGTGT
TATTAGATTCATCATGAAATGAATTTTCATATTTTTTGTTTAATATTGTGGATGTTCATA
TTTTTAGCTCTGAACTTGGTCAAAATTAAAGAAGTTTGACTTTCCAAAAACTAATAACCC
TTGTATATTGAAACTGATGGAGTATTTAGTTTGGCCGGTGTGGCAGACGATGGAGTGTGT
TTTACGTTTATTTATAATGCAGTTATTTGGTGGGTCTTTCACGGTGTGATTCTTTGTTAT
CCGCTAATGAACCCATGTTTATGTGGAGATATTTTTTCATCGTTGGTTGCATATACTATA
TTCGTGCTATAGTATCACTAGGTGACGCTTTCGTATGGGTGATAGGAGTCTGCGAGGGGT
TGACATGATTTTATATGCCAGTTGATGTTGATTGATTTGAAAAATCGTTGGCCCGATCAA
AATCATAAACCAAATCCAAAATTGAATACAGTTTTAAAATTACTAAGCATAGAGAATTAA
AATAATTAAATAGAAGAGCTCTTTGAGAAATTGCTGACCTGGTCAAAAATCGGGTGACCA
AAGTCTAAATTGAAGCCTCAATTAATTGTGAAGATATAAAAATTTGGAAGCATAGTGTAT
TGTATAAAAAATTAAATGAAAGGGTTTGATAAATTGTTGACCCGTTCAAAATCGGATGAC
CAAATTCCAATTGAAGACCTCAATTGATTGTGAGGCCTCCAATCCTAGGGAGAGTAGTCA
TATAGTATATTTTGTAACAAGGGCAAGGGTGTCCCGATCTTCGATGAAAGATCGCTATCG
ATTTGGGTGGAGTAGACTTTTACGATCCCACTTCCAGTGTGACTGATGCTGCGCTCACCT
TCATCTTCGATGAAAGTCCTGGAATATGCGCCTTCATCTCCATGTTTGATCATTCTGCAA
TGCTCATCAATCTTGTGCATGCTAGGCCCTTCATAGCAAATACAAACATATCTATTTAGG
CAACATCATATTCTCATCAATATTAGTAGTTCTGAGAAAGGAAAGTACCTAATAATTTAA
TTGGCGTGCACGAGCTCTAGGGATTGGTCCTTGTTTATCTAGAACCTAACATGTGTAGTG
GCAGGGTTGTGGGTGTAACAATGGTAAGAATGTCCGCGTCAATTTAATTGAGTTCTTATA
TAAAAGCAAATCTAATATTTGCTGCTTACCTCCCATCTCTTTGTTATGCAACAGTTATGA
AATCATCCGACTATAATTGTTCCATTGGGTACAAGCTGTTACACTCTTCTCATACCATTA
CTTACTATAGATCTAATCTTATTTAGCCAAACATCAACTTGTAATGCAACCACTGGAGTT
ACAAATTATGTACCTTCAAACATTTTTTTTCACTGATTACAGATGATCACGCTTAACACT
AGTCAAAGTTTTGCAGTTATTTCAACACTACATGATTGGTTAACACCACTTGCCGTTGTG
TTGCAGGAGATGAACCTCTTAGCCGAAGTTGACCAACCAGGTAGCCTTATTGGCAATTAT
GTGGCACAACTGAATTTTCTCCTTTCACGGAAGGCGTCTGGCTTGGTCAGTCTCCAGGCA
CGCTTAGCAAGGTTTCAACAGCGCCTCAAAGAAGAGGAGATCCTTACCCGTAAGAAACCA
TCAAGATAGGTTAACCGAAAATATAAAACCATTTGGCATGTCATGAATTGCAAGGAGCCA
TGAGCGGGAGGTATGTTTTATTCTGATCTCCCACATGAGAACCCGGGAATGAGTAGCAAA
TGGAGTCGTGCAGGCTTTTGGTTTTGTGGGTTTCTCAGTTTGCTCATTTTTCTCTTTTCC
TCAAAGGGTTGTTTCAAAAAATAAATAAATCCGGTGGTGGCATGATTTGTGATTCTTGCC
ACTTTCTTTTTGAATGAATATAGTTTAACTGGTGTTTAAAGATGAGAAAATTATACTTGT
ACCTTGGCAGCATAGAAACGATTGTTGTATTGCGTGTAAACAAGAAAGGTAGCATTGTGG
TAAGATCTTCAGGAGTTAAGCTTGTGCATTCAACTGACCAGGTGGCTATATCAACTGAAA
CATGGTTTGCCGTTTGGACGGTGGATTTAGCTTGTGCATTCAACTGGCTAGTATGATTTT
TTAGTTGAGTAAATTTAGTTACACTGCATGTAGATTCTCAAAACCGATGGAGTACCATAG
ATTTCATGTTGGAATGCTTGTTAAGGAATTTGTTGAGTACTTGAGTATTATTATCCCTTT
GTAACTCAATATAAGATGTTTTTGTGTTTTTTGATCTCTCTCAAAACAGTGTGAATAGTC
ATTTATACCTTGCTCATTTGAATTTCGAATTTGATGTGATCCCAACTTCTTCCTTGCTAC
GCGCCTGCACCTCATCGGGCCTTTGCGCCTTGCCACACCTTGCACCTTGTTGTGCCCTGC
ACTTGCGTGGCGCCCGTGTAGAGAGGTGTGGTGGCGCCAAGTGATGTAGGGTGAAACTCT
AGTTGATCATCTCGTCCTGATGTTCACGAATTGAAAGAGTGGTGTAGGGTGAAACTCTAG
TGGATGATTTTGTCATGATTTTCACGAATTGAAAGGTGATTTCGAGGAGAAATGTGAAGA
ACATGATGGGAAAACATGAAAAAATCAAATGGGAAACACTTGACAAAGTTTACACTAAGT
ATTCCTCAAATCACAAGCATCAAGATTCAAGAACAACAAAGGAAATAAAGATACAAGGTA
GTTCATCCAAATCTCTAGGAGAGATGGGTCTTGAATCCATGGATGGATCTTCCCATGAAG
AGTCCTTGAACCCCTTAGGATCCTGTCACATGTAGGTCTTGATCTTCGTGGGAGAGATCC
CACAAGGGGATGTACATGAGTTAAGCCCTAGTGTAGTTCTAATCTTAGCTAACCCTAACA
ATGAGGAGAAGGAGGTCTATATAAGGTGCTAGGGGTGAAGGTGTAAATTAGGTAGGGATG
TAAGGCCAAGTGGCCCGTCATGTACACAGGCAGGGTCGAATGATCTGGACATCTTCCATA
TGATTCAGGAGTGGTCCCAAACGATTTGAATTTGCGGTGAAGTTTTGGTTGCATTTTGTT
GCGGTAGCCCGATGATCCACGCGGGGGTCCAGATGGTCCTCGCATCGGCCGGATTGTTTG
GGAGTGGACTTGCACTTCCTCTCGTTCCTGCTCCCGTATTCTCTTCCATGCTTCCCTCGC
ACATGGTGTAAGTGTAATTTGCGCTCACACTCCTCATCGTCATCCGTGAAGCTCCATCAG
TACCTATGTATGCACACGAGAGGAGTGCCAAGTAGTATACCATCCTCGAAGGGGTCAAGT
GAACACGTATAAAGAAGATGATTCACCTTTATGTATGTGAAGCAAATGTCACACATGCCA
CTTGTTAAATGGACTCTTGACTTGGCGATGTCCATAGGATGCTCTGCATCATCTCCTCCC
CCTTGGGCCTTGTTTGGTTATCAGGGAATCAATCCCCTAGTGGATTCGATCAGCGCGTGG
ATTGGGTTGTCACCCATCCTGTCACCAATCCCTCTCGCTACTGCAGTCAATTGTCGTGGA
TTTCTTCCACGTGTGGAGGGCGATTCCTTTTTACACCATGGATTAGAGTGGAAGAGGGTG
GATTGAGCCGTGGAACATCCATGCCCCAGCTAAACCAAACAAGCCTTTGGGCATCAACCG
GGATTTATTCCCCGTTTGGGCTAATACACGTGGATCGAGATGAGGACCCTGCTGATACAC
GTGGATTAGGCTCAAACCAAACAAGGCATTGGGAAAGATCAGTACTTGGATCAGAAACCA
AATCACCATGGGAAAAAGATAGTGTCGCAGTGTAAAAGTGGACGATCACCAAATACTCAT
CATCTTGAAGCTCGGAGTGGGCACTCTCAAGACAACAAACACTTTGAAAAACAAATGTGG
TTAGCGTTAGTGCAAAACCAAGCATTGAAGTGGTGATTCACCTAAAAACCGTCGTCATCA
TGCATAGCATATAGTGTGACAAAGGGCTGTGGCACACTACAATCCTTAATTTGAGCACAA
TCAACGACATCATAATCATGGCCAAGAATCAATATCATGCTAAGGGGCCAATTATGCAAA
TGTGAGGTAGTGATGTCAATATGCATGACAAGTGAACAAGCATCTACGACAAAGTCATAG
CAAACATGCACAAAGTGCTGAACAAATGATCTATGCTAGGCATAAGAATCAGTCACAACA
CCAAAGAGAATGAAATGTCTAAACACATGCGTCGAGTTTAATACAAACCAAACATAATAT
GCATATGGTGCAGTGAAGATAGTGTGACACTCAACACAATAGAAAGAGCAAATGAAGTCA
AGTATGTAGCAAGCAACGATGATGCGAAGCATCCTACGGTCATCCCCATGTACACTATGA
CTACTCCCTAAGCCCTAAGTGCCATTGGACATAAGGTGAACTCCCTCTTAAGTGCTTCCT
CCTTCAATTCACTCGAGACATGTATGCTACATCAAGTGCAGACATTGTCCCATGTACACT
CCGACTACTCCCCAAACCCCAAGTGCCATTGGACATAAGATGAACTCGCTCCTAACTGCT
CCCTCTTTTAATTCACTCGAGACATGTATGCTACCTCAAGTGCAAACCTTGTGTATACTC
AGTTGCATCAGAGGACACCATGAAGAGCCCAAGGACCAAGGCCACGCTTTGGGCGAGAGC
GAAGCAAGGAGAAGGAAGAAGAGTCAGGCGCTACAACGGTCGGATATCCGACGACAGCAA
GTCCAAGTTAGATGCCAAAGAGCAGCGCGTGATGTAGCTACAACGGATGGACATCCGGCT
CCGCCCGACATCCGTCCCCTGCCCGGAAATCCGTCCCAAAGACTACACAATCTACACGAA
TTGGGCCAACCTTCGATCGTACATCCGTCCTATCTCCCCGGACATTCGGCATCTTTTGAA
GGGCCAAACATCCAGCGTCCAGCCCAGACATCCAGCTTGTGCACGCATGCACCACCGGGC
CAAGGCCCATGTATCTCCCTCTCTCACCCCCATATCGCCTTGGACTATAAACTGACATTC
CCCTCCTCATTTCTAGGGTTAGAATGGTTTAGCTCAAGACTAGTTGAGCATTGTTCCTTC
CACTACCTCCTTTCCCATGGAGATGACCTCCATGAGAGAAGATCCCTAGTGGATGTCAAG
GCCCCTTTCGAGGGAAGATACATCACGGATTCAAGACATCATCTCCCTATGGGATTTGGG
ATGAACTTTACCATGTATCTTACTTTCCCTTTGTTGTTCATGTACCTTTGTGGATCTTGT
GTGGTGTGAGTCTAGTGGATGTGTCATTGTACTTGTTCTTGAGGGTTTCCTTTTGTGAAT
TGTACTCATTCTTCTCGGTGTTCTTCGTGTTCTTTGAGGTTTCCCCCTCCGATTCGTGAA
AGATCAACATCTAGGGGTTCCAACCCATATCATCCTTGATCAGAGCTTTGGTTGAAACGA
ATTTGGAGTCCTTCCCTTCATTTTCTAGCCTAATTTTGCTTGTTTTTATCCCAAATCAAA
AATCCCCACAAAAAATAACCTCACCATTTTTTGTTGGTTCTTGTGAGATTTTGTTGAATT
TGATCCATGGAATTTATGTTTTGCATGTGGATCTCGTTTTCCCACCAAGAAACCCACCCC
AAATTTCCTTTTCCCCATCAATTATGACCCCCGAGCTCAAGTTTTGCCCAAATCGAGTTC
GTGAGTCCCGAATCGTGATCCGATTAGTCGGGTTGGACATCCAACCTCTGTTCGAAAATC
CATCGCCCCCCGCTAGACATTCCGGTCCTAGAGCACCAAAAGAGAAGCGGTTCTGGACAT
GAATGCCCGTATTTCCGCATAACCTCCCCACCATACACTTCTACACAACCTTCCCACCAT
ACACTTTTGCCACCTTAACCAAATTTTGTTTGAGATTTTGAGTTGTGGTTCCTGTTTCCT
AAGATATTTCGTCTAACTAGGGACAGTTTAACATCGACATCGCCGCCACTCATCATCGCC
TCGACCTCGACATCGACAACGACCACTTCTCATTTTGGCACCTCAATCGTAAGCAAGAAT
GGTAATGTGGACGACATCATTGTCCATTTCCTTGCCACTGCTTTGATCACCTCAAGCCTA
TTGCGTACCTTACCCATTGAGACTAGCGAGCTGAGAATCGCCGGGCCACATTACTTGTGC
ACCGGTAGTGATATGCCTACTCTGCATAGCTACTTTAAGTGTGCAAACATCTTGCTATCC
ACATTTTACCATAAGTCTCTCCCGTGCATATCGGACATACTTATCTCATATCTTGATTCG
AGCACATCAAGCATACCCGCAAAGGAAGCATATCAAGTAAAGAAGAGAAGAGAAAAAAAA
CTTTTAAGCAAAAGAGGAAATATAAAAGAGCTTGTAAGCAATAGAAATAACAATGATCCA
TTTTGCATAGTACATACCCCTGGATCATACATACATAGCATATTTGGGATTGAAGACGAC
ACGTTTACTCTTTAGGTTGGTGCACAAGCGAGTATATAATCCATTTGAGTAATCGATCTA
CTGTCTCACTAAAATCCATGCAACACGAGCTTTTCCTGGGTCTCATATTTTGTGCTCATT
CCTTGGTTGTGCGGATCCCACTTATCTATCCGAGCGTGTGTTCCTAGTGCCACTATAGCT
ATTGATATATTTGCTTTGCATTGCAATTTTGTGAATCTTCCTCAACATTTTAATATCTTG
ATTAACAATTGCTTGAATTTTGTGCCACTTGTCCTAACCGAGCAACTCAATAAGCTTTAC
TTTGTAGGTGTGAGTGAACATGTCCGATACAAATTGCACTATCCTCTCAATTCACATTGA
GTGAAATGGGATACATCCTCAACTTTGGGAACGATATGTTAGTATTGTTTATCTCATTTC
CTACTCACCTTTTCTCGAGTTTTATGATGGCTAGGGAAAGCACATCATCTCCGTTCTTCA
ATGACAATGACGACGCAAACAACTACATCAACCAAAAAGTTGAGTGACTCACCATTGACA
TATGACAATCTGAAGCTTAGAAAAGAGACTACATCGACAACAAGTTGGCCACTCACATCG
ATCATCTTTGACACATGTTTGATAACTACAACTCTTATTCCCCTTCATCATCTTCAAGGC
AGAGATGCTCAAGTCACACATATTCGGAGCACACATTTGATGCAAGCACAAGTTGGACAC
ATCCTCATCTTCGAGATGACCACCATGACAACCATCACATTTGTGACCTACATTATCGTG
AAGGGAAATCCTCCTCGAAGAAACATGTGTGCGAAGATGAAGAATGCCATAGAATAGAAG
CTCTACACCACACTACGTTCAACATTCATTAGCATAGGAGTAAGGACAAGCTTTGGCGCC
AACATCAAGGCGACCGACTACACGCATGGAGCCTTTTCCAACTTCAGAAGCACCCCAAGG
AAGATGACCGAGCTTCGGAATCTACTTTCAGCCATGGAGGTGTGCGAGAGGTGACACATC
ACGTTGCCCTCATACAAGGAGATGGCAATAAGACGGTTGAGCATGGGACTATCCCTTCAA
CCAAGGTGGCGCAAGGAGTTAAGCATGGATATGTTTGCATCTACATTTTTCCAATACCCA
TATTGTTGGAAATATGCCCTAGNNNNNNNNNNNNATTGGTTATTATTATATTTTCTTTTT
AATGATAATCGTTTATCATCCATGCT