morexGenes - Barley RNA-seq Database

Contig contig_136328
Source Contig contig_136328
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136328 (6922 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_136328

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5492	3	2445 bp	AK365532	Available	Available	None
MLOC_5493	1	307 bp	None	Available	Available	None
MLOC_5494	1	472 bp	MLOC_5494.1	Available	Available	None
CDS Structure of MLOC_5492

CDS Structure of MLOC_5493

CDS Structure of MLOC_5494

Contig Sequence (6922 bp)

>contig_136328 6922 assembly3_WGSMorex_rbca.fasta
TCCGTATGTAGACCCCTAATGAAATATCTTAAAAGANNNNTATTTAGGAACGGAGGGAGT
AACTGATACTGTTACTAATCAATAAATAGTTATCACTGGCCATGACCTTACTTCATATCT
TGAACTTGCATTTTTCTGATAATGATCTACGGTTATGCACATAAACTAGCATACAATGAT
AAATATCATTCCTTCTTTCTTTCTTTGATGCAATACTTCTCTCTGTAGAATACTCTGCGA
ATCAAAAAAGTTTGAAGGATCTACTAATTGTGCTGAGCCCTGGTACAATACATCATATGC
TGTTGAAAATGTCACTCCATATATGATACAGGTTGGCACCCCCACCCCAACCCTACCCAC
ACGCGCACCAGCAATTTCATCTTCTAGCTATTATATTCCCATCTTATACCTCTATTTGGC
AGCAATGGATTAAAAGAGCTCCTACTGAGAAGCTTTATCTCCCAAAGCCTAACATTTTCG
TTCCAAAGGATTTATCCCTTAAAGAAGTGCAGGACAAGGTAAAATTTGGAGCGGCTTGTT
TGTTGTGTGTTCACGTTAGCACACTTTGTATGAATTTTGAATTGTCAAAACTTTATATAT
TCACATAGTATATATATTTTCTCAAACATAGTGTATTAATTTTGATAAAAATAGAACTAT
TTCACCAGGTTATATTTCCGACAATTTTAAGGAAGACGCCACTTTCACGGCTGTGGTATA
AGCCCGACATGCTGTTCTTCACTCCGAAGGTTAACATTATAATTGATTTCCACTGTCCAT
TGTCAAGCCACTCCCCTGAAGCAGCCGTATCTACAAGTTTCTTTGTTGATTTGTTAGGCG
ATTACTTGAATGCTTATGGTAAGAAACAATTTTGAAATTATGTGAATGATAGCATATTTT
ACCATATTTAACAGACTGTCTGGGGATGGCTCCCTCGGTCCCTCCAGCTTTAAGTCCAAA
TAGACATACACTGACAATTAGTTTCTGCCTTTTGTAGCTTATGATGCTCAAATTGCGGGT
TTATTCTATTCGATATATCTTACTTCTACTGGATTCCAGGTTTAATTCTGTTACTCTGTC
CTTTATACTTCCTAAGTTCCTATGAGTGTTTCCGCACATCTAAATTGCTCTTCATGCTGT
CTGTTCTAGTTTCATGCATTACGATGTTGCTGGTGTTTGCCCAGTTTCGAATTCAAACTA
ACACTTACCTGAACTTTTATTTTTTGAAGGTGTCTGTAAGTGGTTACAATGACAAGATGA
GAGTTCTGCTACATGCCATAATGAAGCAAATAGTGAACTTTGTAGTTAAACCAAACAGGT
TTTCCGCCCTCAAGGTTAGACACGGATTCTTGGTTTTCAACTGTCATAATTGTGCTCAGG
CACATTTATCTATTTACCTAGTCTCGTTGTCATTAACTTGTGTGGATCAACTTAGAGCTG
TTGAATTTTGCTTTCACTAAACACTGTTTATCCTGTGGATTGCAACTGATAGATGATCAA
AACTGAGGTATGCCAGATTTTATGTCGTGGACATGATATGGCTATTGCTAGGACCAAAAT
CATAAACATTCTGCATACATAATTATGATTCATTTGTTTGCATCTTTTGTAACATACTTT
TTTGAAATTTATAGCAAGTTAGCAACCTTCTCTCAATATGATAACAAAGGTTTTGGAGAC
TACAGATTACACAAGCACATCAATTTAGATACTACATAGAAAATCAATAATTTCTTAAGA
TCCATTGTAACAGATTTGGGACAAAGTTGTTACAACTTACAACACAATACATTGTTAGCG
GCAGTAATACTATGAACTTTCACGATGGCCAATTTTTAGACTGGGAAATATTCTTAATTG
GTGCAAGCGGGAGCTACATGCACCGGGCTGCCCTTTTTTAAATATTCTTAATTGGTGCCT
TTTGAAACTGCTGCTATTATTTCTTTCATGCCTACTTTCTTTACCAACATCTTGCTACCA
CAGGAAACTTCTGTGAAGGACTACCAAAATTTTAACTTCAGCCAACCGTATTCTCAAGCT
TCGTATTATCTCTCATTAATATTGGAAGAGAAAAAATGGCCTTTGGATGAGAAACTTCAA
GCTCTTTCTAAGCTCGAGTCAGATTCTCTTACGAACTTTGTGGCACACGTGCTATCGAAG
ACATACTTGGAATGCTATGTTCAAGGTTTGGTAAACTTTCATGTTTATACTCTCCCAAAT
GTTCCAAGGACTGGACTGAAATGCAATCCCAACTGTGCTTAATAATAATTAAATACCCTT
CTTGCAGGAAACATTGAGCCAGGCGAGGCTGAGTCTATTGTCCAGGAGATTGAAGATACT
ATATTTAATACCCCCAGTTCTGCATTCAAACCCATGTCTCCATCACAATACCTGATCAAA
AGGGTTATCATGCTTGAAAACGAGATAAAATGCCGCTACCAAATTGAGGGATTAAATCAG
AAGAATGAGAATTCATCGATTGTCCAATATATTCAGGTAGGCTTCTTCTGAACTTTGATG
CAGCTAATGTTCTAAAAGGCGATTACTTGTTGGTGACCAGTACCTTCTAATATCTGTTGC
CAAACTAATGGCGGGTCATCAATTAGTGAGCCTGTTCCCAGATAATTACTGGTTATGATC
AACCTAGTAGTAGTTTTTTAGGTAAACCCAGTAGTAGTTGGAACAATGTGAGGGGACTAA
GGTAGCTGAGCACTCAACTGCGGCAACTCAAAAGAATTAGAGTGCTGATTTTTCCTACTT
GAAACATTATTGTGAAATGTTGTCTTACATGCAAAATATAATGCCAATAACTCCAATTTA
AACATAATTAAAATGGCTAAGAATAGTGTGAAAACTAATCAAATTTATAAACAATAACTG
GCTCCTGGTCGCCTAGCATTGACCGGAGCACCAAGTATACTTCATATCGGGGCATGACCA
TACTAAGTAGCACTACATGATTAAGGCATCTCAACCTTGAGTCACTAACCTGACGCACGA
CTGAACAGGCATAAAGGGCATGTTCATCGGGGACAGACAATTAGTGTTAAGTTATTTTTG
ACCTGTCCGCGAGGAGAGCAATGACATGCTTGAACCACCAAGTGAGGCTCTACCGACTCG
ATAATATCAAATTTATCGGTAAAATATAGTGATATGACTGAGTGTGATATGACGAGATAT
ATATTATTTGGTGATGTTTTTTGCTCTGTTAACTCCCTGTAGAACAATAATTCTTAAAGG
AAGTTTTTTTCTTTTGCGCTGAAAGCAAACTTCCTTTAGGAGTATTGTTCTACAGATAGT
TACGTAATATCCTACGGTAGTAGTAGAACTGTCTCGTGTCAAATGTATAACGTTCTATAA
GAAGAAGCATGCCACGTAACTAATAAGCATATTCAATGTATCCAGGTCCATCAGGACGAC
GCCCTCTCAAATATCAAACTCCAGTTATTCTCTCTAATTTCTAGTCAGCCTGCTTTCAAC
CAGCTACGGACTGTTGAGCAACTTGGGTATATAACATATCTTTCTCTGAGGTACGTCCTT
TCAAGAGAAACATGCACAGTTTGTTTGTACTGTCATTTATCAACCTAACTTACTTTGATC
CATCAGATCTGATCGTGGAGTCTGGGCACTTGAGGTTGTTATTCAATCCACAGTGAAGGT
ACATGTTGAAAGATTGAGTAGCGAACGTGACATACTTTTTTGCCACATTCTCCTACTGAT
ATTATAATGGAATCCTAGGATCCTTCATATCTTGATTCTAGAATTGATGAATTCTTCAAG
ACATTTGAAAGCAAAATCCATGAACTGTCAGACAAGGATTTCAAGGTTAGTGGCTTCAGT
TGGCTTGCTTTATAACTAATTGATGTACCATGTCGAATTGCGCATCTCTTTCATAAGTAC
TCAATTACTCATGATATGACCACATAGTTGACTACATTAGCTCATTAGTGTCTTCTTCGT
CGAAAGACAAAAGGTTTAGGCATTGCTGAAGCATTTTGACATTGCCGTGTTTTGCTTATG
ACAGAGAAATGTCAAATCGCTTATTGATTCGAAACTGGAGAAATTTAAAAACTTGTGGGA
GGAATCTGACTTCTACTGGGGAGAGATTCAAGCTGGAACTCTCAAGTTTGATAGGGTTGA
GTCCGAGGTAAGTGCCTTTGTTCCGGCAACAATACCCTCTATGTTTTCTCAAAAAGAAAA
AAAAAAACCCAGTGCAATTTTCAAAAGTTCCGTTTTGAGAAAACACATCACTTCTTTTTC
GTAAGGAAAAAAAAAGGCTGTGTCCTGGATCCGCAAGATACCATGACCTCGAAAATGATT
TGCAGGTTGCTCTGCTAAGAGAGCTCAAGAAAGAAGAATTCATCGAATTCTTTGATGAGT
ACATAAAGGTGGACGCCCCTCAAAGGAGGACAGTGAGCGTGCAGGTCTTCAGCGGCAACC
ATTCGGCAGAGTTCAAGAAGGCGATCGCCGAGGATGACCTGCCCAAAACTTGCCGGATTA
CCGACATATTCGGCTTCAAGCGATCACGGCCTCTGCACCGCTCGCTGAAGGGAGGTCCAG
GCCGGATCACAATGGACTGACATACTGCATGGTCTGCAGTGTAGTACATAGTCTGTCACC
ACACGCATGAACCCAATTTTGATTGATTTTTCTCGATGGTCGCACACGATTGCACAATGC
CATTAATCCTTCATGTATGGAGTAAACCATGTATTTTCAGAACGAATGCACAAGCTTATA
GGAATTAAACGACGCATGCTACTTTGCCTGCATCTATTTCTTCTGACAGGTATGTACAGT
CGCACGAGCTGACGATCACAGCGGACAAGAAGGCGCCATGCATGAGCCTAGAACACGTAC
ACACCGTGGGCGGCACGTGGCTGGCGCAGGCGTCACCATCCTCGCACGCGTCACCGGCCG
CCTCGGCTACGGCACGGCCCCGATCGCCGCCGCCCTCCCGCGGCCGCTGCCCCACGCGTA
GCTGGCGCGGTGCCAGCGGCACCGGAACGAGCCCCGGTGCGCCGTGGGCGAGCACACGCA
GAAGTGATGCCGGTGTGGCTGTCGCTGCGGCGAAGGCGTGGGCGCGACGACCCCCGCCGG
CCGCTGCCGCCGCCTGGCCGCGCAGCCCGGCGGCAGAGGCGGCAGCCCCGGATGGCACAT
GCTCTGGCGACGGCTAAAGCTGCAGAGAGGGCTCTGTCCACCCGGCCACGCGCATAAAGA
GGCGACGGAACGGAACGGAAGGGAACCAGGTTCTGGTGTTTTCCGGGAGGGATGTGGCGG
TGGTGGAGATGGAGGGGGGAAAGCGAGGAATATTTGTGGGCGCGCGGGTCACTAGCCTGG
TTGCCGTGGCGGCCGCTGGTTTCGTGAGGTGGTGGGCGGGGAGGCGGGGGAAAGGGAGGG
GCCGCGGCCGCGTGGCGGGGAGGCGAGATGGGGAGCGGGCTGTGGAGCGCGAGGCGTGAC
GCGCGCGCGCGGAGATCGATCGCGTGGGAAAGGAGCGCAATGGCGGGACATCCTGGTTTT
GCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGGAACGTCTCTAGTCGTGAATCGT
GATCCACTCCGGGAGGGGACGGTGGTCGACGGTTCCTTGCGGTGCACTTCTTTCGGCTCC
GACGGGGAACTGGAGTGCGCGCCGGGTCAGGCCAGGACAAAAGCGGGTAGCATGACCATC
TTTCCATCCTCTCGTCTCGTGGCTTCTTTGCGGCGCACTTTTCTTATCCTCTCGGACCCA
TCCGTGCTACATGGTGTTACCTGAACGCCAACGGACTGTTTGGTCCATACGTTTGGCATC
TACCGGCTCAACACGCGGAAGTTTCTTTTTCGCCGCACGACCCATTCCTGACTTAAAGTT
GGGTTGCATTTTGCGAGTCCGTACCAACATCATGCAGACGCGTGCAACACCCGCATATCT
ATTTTTATGGTCCGCACATGGGCTGTACAATCAGATTTTTTGTTCAAAACACGTAAAAAA
AAAGAATTTTTGTTTAAAAGAACCAGTATCTGAGTCGATTTTGCGAGAAAGGACCACCAA
GACGCATTGTGAGAAAAGACACCATGCCATTCTGGCGGCAGGCGCGTCAGGTGACGCGTG
ACACCCGCCGCCATCGGGCTAGGCGGCTCGGGCCTGCCGCCACCGGTCCAGGCGGCCAAC
CAGGAATCCCGTTGCAGCGCTGTTCTGCGACGGAAACGGACAAAGGTGGGGCCTTGTCGC
CACCAGCCGAGGCGGCCGGCCGGCCTGCCGCCATCGGTCCAGGCGGCCAGCCAGGAATCC
CGTTGCAGCGCTGTTCTGTGACGGAAGCGGACAAAGGTGGGGCCTTGTCGCCACCAGCCA
AGGCGGTCGACCTGCCCGCCACCACTGTCTCAGGCGGCAATGCCTCCAACTGTGCTTGAT
TTTGGTTGCAGGGGCTGCGGGCAGCAGAAGATTGCGGCATTCGGCAGGGTCAACCAGCGA
GCAGCAGGATTAGCAGGAATATGGAAGTGCATGTCGGGGAACGTTGCATGGGAAATAAAA
TTTTTCCTACGCACGAAGACCTAACATGGTGATGTTCATCTATGAGAAGGAGATCGGATC
CACATACNNNNNNNNNNNNCTCAGCGGGAAGCGTTAAGAAACATGGTTAATGTAGTGGTA
CAGCTTCGTNNNNNNNNNNNNNNNNGTCCCACGATCCGTCCCGATCTAATATCGAACGAA
CGACACCTCCGCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTTGATCTAG
CAAGAGAGACGTGTAAGTAGATGAGTTCTTCGGCAGCGTGACGACGCGTCGGTGNNNGTG
ATGATCTATTCCTACAGGGCTTCGCCCGAGCTTCGCAGAAATCCGATATAGAGGAAGAAC
TGCGAGGTATAGGTTTGAGTTG