morexGenes - Barley RNA-seq Database

Contig contig_136325
Source Contig contig_136325
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136325 (8254 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_136325

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5489	6	1765 bp	MLOC_5489.2	Available	Available	LOC_Os01g36550.1, FRAME:-2, EVALUE:0.0, 13101.m03701 protein protein kinase family protein, putative
MLOC_5488	1	1258 bp	None	Available	Available	None
MLOC_5490	2	3005 bp	MLOC_5490.1	Available	Available	LOC_Os01g36540.1, FRAME:-3, EVALUE:0.0, 13101.m03700 protein pentatricopeptide, putative
CDS Structure of MLOC_5489

CDS Structure of MLOC_5488

CDS Structure of MLOC_5490

Contig Sequence (8254 bp)

>contig_136325 8254 assembly3_WGSMorex_rbca.fasta
GGTCGCATCTTGGGCGTGACAAGGTACTCATCCCATGAATCCGTGGCTATATCATAAGCA
AACATCTTCATAGCAGTTGTACACTTTTGATAACTAGAGAACCCTTCAATGGCATCATTC
TTCAGCTCGAAGTAATCATCATATGGCAGTGACACCTTGGTTGATGCGTTCGAACACATG
TTGCAACATTTGAAATCGGCGACGAAAATAGGATTAGAAGTAGTCGTCATACAACATCAT
ATGGCCACATGCCTTCCGTCGATTCAAAACTCTATGTTCCTTTGTTGAGCCCTTGTAGTT
GAGACCATGATTCTTTGCGTGGACCACATCTTCAAGAATCACCTTCAGCATCATCTTCAT
CCTCGTTCGATGAAGTCGAATTCATGAACTCGATGTAGAAGTACTTCTCGAATGTATCCA
TCACGTTTGCTTCAAATAAACAACGGGAACCTAAAAAATGACAATGGCATTCACCGAACA
CCTATAGGATGTGGTGTCCACCATGGGCGGCGTCTGGGTGGTACATCGACAACGTCGGAG
TCCTGGAGCATGTATATAGAGCACATGAGGATGGACATACCAGGGGAAAGCACGAGTGTC
GAGTGGTTTTTTTGGATGCGTCCGTGTTGTCAAAGTCAAGCGTGGGGGGTATTTGTGCGC
TCGCAAACCTCCCCTCAATTTGGTGCCAGTCTAGGGATTTCGTACGTTCAGACCCACACC
AAGAAGTTACCCCACAACCTCCTCCTATTTAGAGATGTTGCCTCCTAATTAAGAGGCAAT
CAGCGTAAAATTACCACAAATATCAAAATCTTCCAGGTTTAATCTTATTATTATTATTAT
ATTATTGCTAATAGTAGTAGTAGTATCATTATTTTTTATACTAGTTTTTTTACCTGACAC
TTTTGGAATGATTTAATGAGAGCATTCACTGTCTTTGGTCTTCTGCTTTGTTTAAGACAT
TATTGCAGATAAGTCTGGAAATGTATCATGTCTGTAGATACATTCTGTGAGCAAGATGGA
TATGGCTGACTTCACTCAGTCAAAATATTCCAAAGAGAACCACATGGTCGCAAGTACAAA
TATATCAGAAGCTGCAAACCAATAACCATTCTCCTCTAACAAAAATCAACAGGGGCACAC
TTCACTTCTGGTATCTACATGATAGCATATATGCCGTTTTGATCATCTACCGTTGAAAAC
ACCACTAAAGACCTCGTGGTCGCCTCCAAGCGACGCCTCCCACTCTATGGAGGTCAAATG
AATTCGAGACAGCATCGGCATAATCTCCCTCATCTCAGGCCTGTCCAATGGATCCTCACT
CAAGCACCACATCGAAATGTTTGCCAGCTATACACGGTAGAAATGTAGGATTAGGCCAAC
TGAGATCTTTCACTGTGTCAGTGGTGATGAACAGTTTTACTACTAACCTTACACACTTCT
TCTATGGGGTAGTTGTCCTTCAAGGAGGGATCTATTATATTCTCCAGTGAGCTCTCCACA
TCTTCTGATTTGAATGCTTTCCTCATCTATTATGCAAACATTGTCAAAACAGATCGGCAA
ACTATAAAAACCGAAACAGCGCTCGGATGTCCACAGGCGTTTGCCATTGCTCTTACAGTT
GAGATAAGTGACTTTGTCTTATTAGCTTCCTTATTGTCCCGCACAAGTGCACGGAGACCA
GTGATCAGTTCTGCAAGAACTACTCCAAACGCATAAACATCAGACTTCGTGGTCATGTGA
AGCTCACGGACTGACCTGCAGGTTGATGCTTGACGTTACTATTACATTTGAAGCTTCATC
AGCTGAAAAAAATGTAAATCATGTCCAAGTAAAAACTAACTCCGGTGGAAGGTAGCCTGG
AGTTCCAACCAAACGAGTTGCCAGGCAATCTTCTTCATCACTGCGCTCAACTAGCTTTAC
CAGCCCGAAATCCGCAACCTGTTATCCAGAAAATAATAAGATTGCAATCAATACCTGAGT
GGATAATACTTGAAACTTTGTGGTTTTGAATGGCTCACTTTAGCTCTTAGTCCATCATCT
AGCAGAATATTGCTGGTTTTGATGTCACGGTGCACATAGCAGGCCTTTGTATGGTCATGG
ATGTACTCAATACCGCGTGCAGCATCCGTTGCTATCTGTGTTCTTGCAGTCCATGAGAGA
GGTTGATGACCTAAGAATTAAGCAATACCTCATTCAAAGTTTCAGAAATTTCGGTGAACG
GTAAATCTAGTTTTGTTGACAGAAGCAAACAAATATCAACATGCATAATTGTCTTTCTTT
CACGTACCTTTCAGCAAAGGATCATGGAGATGCTCACTCAGTGATCCATTCTGAACATAC
TCGTAAACAAGGTACAGGTGATCCTCCCCAGAAGCATAGCCAATCAACTCAACCTGTACA
GAATTGCATGAGTTTATGATGACATCTCTTCGTACCCAGTGACCGTAGCATGGATGTTCA
TTTCCTGGTAGATTCTAGTACAGTCTAAGTACGTACCACATTTATGTGATGTACTTTGCA
CAGCACTTTCAGCTCAGCAAAGAACTCCTTTGATTTGCTGTCTTTCATCATCTTAACTGC
AATCTCCTGCGACCAAGGTCAAATATAAGGATCTGATGTTCCTTCGAGATTACGGTTACC
TGAGAAAGATACTACATAAAAACTTCTTACGTGTGTTCCGATGAAACCTAGGTAGACCAT
GCCATATCCACCCTCACCAATCTTCCTCTTCTCATCAAAATTAGCTGTGGCTTCTCCAAC
CGCTTTCAGGCTGAAAATCACAGGCCTCTCTGTTTGGAATGGATCGATATCTGCAACCAA
TTGACCAAGAGTTATAAGATGTATGTGTATCCAAAATGTTTACATGTAGCATAGGGAGCA
TAACGAGACCATCAATCCTCTTGGATGGAAAGTAGCGGCTCTCCAGGATAGCTATGCTTG
TGTTGCTGGGAACTCTCTCCATCTCTTTCTTTGGTACTTCAGCATTGGGCACAAGAGATC
TCCTTCTCAGGCGAAGCACAATGGTGAGCGTGCAAAGGAGCATAATTGCAGCTGATATTG
ATACTGCAATTATGATCGGTAAACCGCCAAACTCTAGAAGTGTTTGAATCAAGCAGGGAG
GAAACACCAAAAAGTTGAGCAGTCAGTTACCAAAGGGCTAAAAGAACATAAAGAATACAA
CAACATTTTGAGATTCCCAACAAAGAGAACACCATTTTGTGATTTTGAGAAATGCTATGA
TGCAAAAAAGAAAAGAAAAATAATAAAATAGAAAGAGAGAAACAACATTAGATGGAAAAA
CATAGACATGTATTTACAGAAAATATATAACGCTTATTGCGGTTTAGCAAACTAATACTA
TGCCAATGGTGTCAACAAGCTTTAGAATTGCAGTCAGTTTAGTAATTTAACAGATTTCCA
ATGATGCAACATACATAGTTGAAAAGTAGGAATGACTCACTTCTTTTAGAAGAACTAGCA
ACTCCCATCGGGATGAACAAGATCCAACCTGGCTGAAGAAAATCAGGATCCGTGACCCCC
GCATTCAAGCTTAGGATCTCACTAGAGCCTGATCTGAACAAGGTTGCAATGTTGCTCAAT
GTATCTCGAGCCTGGACCATGTAAGAAATCACCCCTTCCGGCGCCGTGGAGGAACAACCA
CATAGAAGGTGCACCGTGATTGTCGTGTTTGCTGTAGCAGTAATGTTCCACGCAAGCCCA
CTGAAGATACTGTTAATGTTGTCAGCCGTGTCGTTTAGATTCACCTTATATGCAGTATCA
TGGAAGAGACCGCTCATGTTGTCATTGATTGCATCACACATGCACGGCACAGGGACCAGC
AAGTCCTCTGAACCAGAGAGCCGCTTGATGGGCTGAGTGCGAGATGCGCTGCCATTGAAG
AGGGAGGCTATCTCGGACAGGCTGCGCCCTTGAGGAGTCACATAAAGGTACGAGCTGCAC
GATGCGTTGAGCGATGCAGCGTCACACTGCATGGGCTGCCATTGCTCTGTTGCTGTCGCT
AAACTCCTTCCAGGTAAACCGACACTAATGTGGAGGTGCTGCAGAGACAAGGCGAGGAAG
AAGAAGAACAAGGAATGTCTGGCCATGGGGAACTAGCAACTGGAGAGGCAACTGGGATTC
GGTTGCAGAGGGTAATTTATCTGGCACTCCAAAATTTGGCTTCTGGCACTCCAGGTATAT
TTGTACGGTGCGGTACTTCCAAGAAGGCTAAGATGCCAATTGCCAGGCAAGGCCGGCCGT
GGTGAAGCTTGTTCGGTTTCTCCTAGTTTACTCCGCTTCCCTGAAGCTCCACATGGTTTG
GAATAAAGGAAAATTTCATCAGAGTATGAGAGATTCAGGCCGGGGTGCTTCTCACCATGT
CCACCAAGTCCAGTCGAATATTTTAAAAATACTCCAGCTAGCTGGAAACCTCATGCATGG
ACTCAGAAGTCAGGCTTGCCTTTGGCTTCCAACATTTGGCCTATTTTGCTGGGTCGGAGC
TGGATTGCAAGTGTCCAAACCTAAAAACATATAGCACTGAAAGGGACAACATGACATGGA
CTGCTCGCTCTGAGACAGCATTTTGGCTATTGATATACTATTAATTTGACACTGTCAGAC
ACAAATAAATAATAAAAGTTTCTATCAGAATTGTCCTGAAGCTTGCACAGAGTAAAAGTA
TTAAAATATACTATAAAGAAAGATACTAATATATAAAGCTATTTCAAGGTATTCCCCTCA
CCATAGAAAACTACGAAAACTCTACAACTGTAGAAAAAAGGAAACTACTAATTGTAAGAC
CTGATATAATTCTAATAGATAATGCGTTGGCCTGAACCTCTCCTCCTCCTTGCTGGACAC
ACACACACACAACATAAGGGAGTTCTTATTCTGGGCAACAGATGCCCTATCTTTTCCTTG
GCAACCAATGCTTGTTTACATCCATGAGGTGGTTGTCCTTATATAGGACTTACTCAAACC
AATCTAGCTAAGGGTACTACTCTTATAAAGCTAGCACATGGCTAGTACTCCCTCCGTCCC
ATAATCTAAGACGTTTTTTCGACACTACACTACACTAGTGCCAAAAACGTCCTACATTAT
GGGACGGGCGGAGTACCTTCTACCAAAACAATAGTACAGTTCTGACACCTAAGGTAAATT
CCAACTTTGCTTCTACCACTGCTTGCTGCAGCCTTTAGGATAAATTGACCAATTAAAGAA
AATCAAAGTTTTATCTCTCTTTGGCTTTCTATAAAAAATCTCATTGCACCAGCACAGCAA
CAGTTGAGTACTTGACTAAGCCTCAACTTTATCATCCAAGCACTAAGTGAAGATATATAC
GTTAAATATCGCCACAGAACCATAAAATCATAAAGCTGTGCTGATTATATCATTTGACAT
GTACAATCTACTTCTTTCAATATTGTAAGAGATCCCGACTTAACTACTAAAATGATTTTT
CACAATAATTTACTATCAATCTAGAAATACTTACATAAAACTTTGTAGCAAATTGCTAGA
CTGAAACAAAGGGTTAATATGTCTTCCACAGAGTTTTATAGAAGATATAAACTGAAGGTG
ATATAAGATTAAGCACCATACAATACTTTTTGCAAAGCAGTGATCTTTATATAACACTAC
AGAATATAGCTAACAAGGGGATACAGGCAAGAAAAATGCAGGACTCGACTAAAGAGTGCT
TCAGATATATAGTTCTGACCTTATGTTACTCCACAACATCAACAACTAAGAAATTAGCAA
CATAGAGTTCCATGGATATATACTAAAATTTATCTTTATACTCAGGAACAGCAGAAATAG
TTCTACACAAATAAAACAAAAGCAAGAAAACATTTTTTGTCAAATGGTAAGGTAAAAAAT
AGGGAGTTTCAAGGAATTTCAGATATTTCATTTCTCTAAAACCATAATAATACAGCGTTC
AAATGTACTTGGCATTCGGCATATTTCTTATGATGCAAACCCAACCATCATTTGCTTATT
TCCCCAACCCAACTTATCCCTGTGTTCTTGTGCATATCTTCTTTCGACATCTCGGCCCTG
ACCTCCTCAGCATCCCACCACATCCCCTCTGATGCATACAAATTTGAAAGCATAATCTTG
TAAGAAGCCTTGTCTGGATAGAACTCAAAGAGCTTCTCAGCAACTGCCCTACCAAGGCTG
GAATCACGGTGGACACAACACCCCCAAAGTAATGCACCCCACACGCCACAATCTGGTGGC
ATTGGCATTGTCTGTATAAGATCATAGGCCTCCTTCAGCTGGTTAAATGTTGCAAGAAGC
CTCACCATGTAGACATAATGCTGCATTTCAACCACTATGTGGAACTCATCCCTCATTCTC
CTAAACAACTTCCATCCCTCGTCTAGGAGTCCTGCATGACAACAAGCAGCAAGTAAAGCT
GAGAAGGTAGCACCATCAGGACTGAGCTTATCACGGACCATCTCATCAAGGACTTCAATG
GCCTTCGTTGCAAATCCATGAGAACCAAGGTTTGATATGACCAAATTGTACATGACTGAG
TTCTTACTAGGAATTTGGCGGAATACCAAATATCCCAGCTCGGCGAAACCACATTTTGCA
TAAGCATCCATTAGTGAAGATGAGACTTTGATGTCTTTATCAACTCCAACCCTGACTGCA
TAACCATGGATCTCCTTGCTACAGCTGATACTGGCTGTAGAAGCACTTGCCGAAAGAAGA
CTAGCAATCAAGATGCTGTCCGGCCTCCTGCCAGAGTAGCACATTTCTCTGAACAAATTG
AATGACTCCTCATACTTGCCAGTCTGCAATTGCCCTGTAATCAGTGAACAACATGTAACC
AAGTCCGCATCCAGCAAACTACCAAACAAGGTTTGACCCGATTCCACGCAGCCGCACCTG
AAGTACATGCTAACAAGTGTGCTTCTCACATGGTGGCCAGAATCATAACCGCCCTTGACA
CACACGCCATGAACTGCTTGACCAAAAGCAAGCGCTTCTGGATCCCAGAAGGATGAGAGC
AAGCTGACCATCGAGTAGCCGTCTGGTTCCGCCCCAGCCCTACGCATTGCAGAAAACAGT
TGAAGCCCCTCAAGCCACATTTCCCTGTACCCATACCCCGACATCATTGAGTTCCAGAGA
ACCAGGTCCGGCTCACGCAAACCATCAAACACATGGCGAGCACTGTCCACAAGCAAGAAC
TTTGAATACGCGCTGACGAGCGCGCTGCCGACGGTAGGATGGGAGGACCAGCCGGAAGAT
GACGCGATACCATGGAGGACCTTGGCGGCGCCCGGCCGATAGCAGTCGGCGCATGCGCGG
AGGACGCAGGCGAAGGTGTGAGCGTCGGGCGGGGTGGCGGAGCGTCGCATGCTGGCGAAG
AACGCTAGGGCAGTGGGGAGGTCTCCGCGTCGGGAGTGGGCGCGTATGACAGCGTTGTAG
AGGAGCGGCGAGGCCGGGCGGGGCGCTTCGTCGAGCAGGCGGTGCGCCGGCGCGAACTCG
CCGTGCGCGGCGTAGGATCGGAGGAGACGGAGACGGTGGTCGTCGGCGATGCATGGGGCG
GCGACGATAAGGCGCGCGTGAAACTGCTTCGTGCAGGAGAGAGGGAGCGCGGCGCCACCG
GCGGCGGCGTGGAGGAGCGCGAGCTTCCGGCGCATACCATGGATTCGACTGGCCTCTCCC
GGTCGGGGCGGAGGCTGCTTCTCCACAAGCAGTTTCAAGCGTTGGATTTGCGACGTGCTC
AAAACAAGGGTGTGTCCTAAAAATCCCTAGTGAAACGTTTGTGCGTTGCTGGGCTACAAT
GCGTATAATGAATCAAACAAATAATTAAAGTTTGTTCGAAATTCATTTCTTTGTTATAAA
TCTGGTTGTGTTCAGACATCAAACACGCATTCAGCAGCCTTCTCAATATTCAAACAGTCG
TGGCTTCCAAAAATTCAGCCCATATGCTAGAAAGAAATACGCTTGTCTTGACTATCCATC
CTGTTATCTCCAGCACGCACGCGGTCCCAACTACACATCCCACGATGCACCCTTTTGTTT
TTTTGTCGGATATTCCTCGTCGGTGTCATCTGCTTTTAAACCGGATGACGGTCATCTCAC
CTTCATCTTGACATCATCCTCTCCTTCACATCGTACTTTTTCATGGGGCAGTGGTCTGCG
CCGGCGCGTCGGTCGAAACTTTCGGCCGGCCGCGCGCGGGCCGCACGATCCATCAACCCC
CGCGCGTTCGCACCGTTGGATCTCCATTCAACAT