Map Locations of contig_136284 (7746 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_136284

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_5449 3 2684 bp MLOC_5449.1 Available Available LOC_Os01g42520.1, FRAME:-3, EVALUE:0.0, 13101.m04369 protein expressed protein





CDS Structure of MLOC_5449






Contig Sequence (7746 bp)

>contig_136284 7746 assembly3_WGSMorex_rbca.fasta
GCATTGGAAATGGCATGGCGAAAGATCCGCATAGATTCATTATTTGTTTGTTCAAAACTA
TGTTGTATTATGCAAAACTATGTTGTATTTGTGTTGCATTTTATCTCGTGGATCTGAAGA
ACTATGTAATAATTTGATATTGTGGACATGATTTTTTTTATGTTGTTTCAAAACATGTTT
TTATGCAATATGTGCGGTTGTACAGTGGCTGGACAGCGGCTGAACAACAGACGCGCGACT
GCTGACCGGTTTTGGACCGTGAATTTGAACCATTGGAGTTGGTCTTTTGGATCATGAGAA
TTTTAGACCATCTGTTGAAATTGGCTTTTTTTGAAGCTTCAAAACGCACTTTAGCATTCC
AAATTTTATATGTTCGATTTTGAACCGCCAAATCTATAATGTCTATTTTCCTTCAGAGTA
AACCTTGTGCTTATCGCAAGGACCGGCCTACCTCGTGTCGGTCGCTGTCTCGTTCATCAC
AGCCGGGCCGCGCCGCATGCCGACTTTGCCGACCCCATGAGCTGAACGTGCCTGTACTGA
TCCGTCCAGGAGTCGCTCCGCTAGAAAGCGACGAGGGAGGGGAGATCGGGGAACCAGCTC
AGCTCATGGCCGTCCTCGTTCCGTCTGCAAGCCTCCTTCAGCCACAGCCACTGGGCCCCG
GGTCACAGCCATTGATTGATTCAGTCATCCACTTCTTTGTTTGGCAAATGGGCCACGCAC
ACTATCAGCCTCCACGCAAACGCAGCAGCTGTAGAGTTTTTTTAATTTTTTTGTCACTTC
CTAGAAATCATCTTAGTCACGGGTGGCAATTGCTAAGGAGATGAACGCCCGCCCTGAACC
CATCTTTTTCTTGTTTTTGTTTGTGCACCAATCAAATCCATCCTGATGGATGAATGGATT
AGTTTTTCTTCTGGATGCAAATCTAGATCATTCTTTTAAAAAGGAAAATCTGGCCACGCA
TGGATGGCTTCGCGGCTGACTGGACTGTTGACGGGTCAAAAACAAGTTTAGTTTCTACTT
TGTCTGGTTTGAGTCAGCCTGGTCGTACGGGGTAGCTAATTCGGGAATTTTAAAAAAGAA
ACCGATTTCCTTTTTTTTGTCAACAAAATATCCAAACCTAAATTAGCCAAACTTTCGGTT
CGGATAATTCGGGTATCCAAAAATATTCTGAGCACACATTAACTTGTGAAATAAATAATT
AGGATAGTATGGGTATTTTAGTTAGTATGACCAACATGTAAGTATAGTAATAGCATGTAT
AATTCGGTTAGAATGAAAGTTCTAGTATGGCTATTTCGAATTTTACACACTAGGCCCGAA
TCCTAACCCGAAAACCGAATACCTAAAAAATGAAAACCAAAACCTAACCCGATACCCATA
TTACCCGACAATTCGGATATTTTGGTTTGGGTTCGTGTAGTGGTTTAGGGTATTCAAATG
TTCAGGGTGAGGTTTGACGGTTAAGGTTGTAAAGTAGCCGGTTTCGTAGTGTAGTTTATG
GTTGTATGTTTAGACTCTGATAATGATGGTTTAAAATGTGAACTTCTGTCAATGAGAAAT
ACTCCATTTGTTCGATAACTACAATATAATAGCGTTTTTAACAGTCAAGCATTTGCCATT
GAATTGTGTCTTGCATCATATGTTTTTGGCCCATGTGATGTGATGATAATATAATGTGAC
CAACCCTCGGGCCAAGCCATAACATGACTCTTTTCTTTGTTGATTGACATGAAAGAAGCA
AAAAACAACAAGCGCCGAGCCACCGCAAGTATAAGCACGGCAGGCAACGGCGAACTCACA
TACACACATATACCCATCCGATCGATTGGCACACCAAAAGCCTAGCAATAGATACTACGT
AGTCACTGATCCTGACCGGGAGTTACCGCGTCGTGCATGCGCGCATATATGAAGTATATT
GTTTGTTGTAAGGCGACGTGCGGCGGCGGGGCTATCTGAATTAATCAGAGCATGAGGCGA
CGTGCGGCGGGCTTCTTGCGCAGTCCGACGAGCTTGGCGTCGTCGATGACGGGCCCGCAG
AGCGTGCCGTCGGCCTTCATGTGGTAGAAGGCGCTCTGGAAGACGACCCTCGTGCGGTCC
CTGACGGCGACGAAGTCCAGCACGGCGCGCTTGTACCCGCCGGCGCCCTTGGACTCGTAC
GGCACCTTGAGCGTGGATCGCGCGGCGTAGGCCTCGGCGACCATGGATCCCTTGCAGTCG
TGTCCGGAGTCTCCGACGGCGAAGGAGAGGCGGTACGCCCAGCCGGGCACGGTGCGCACC
TCCTGCACGAGCGCGCTCTCCTTGCCGCCGACGAGCTCGACGGCGCGGGCGCCCTCGGGG
ACGCTGAAGTGGGCGGCGTCGACGTACTTGACGGCCTTGGAGGACATGATCATCCAGGCG
GGGAGCGGGGAGTGGTCGTCCTCGATGTTTGGCGGGATGAGGACGCCCCAGGAGGCGTTG
GGGAGGAAGTAGGGGCCCTCCTCGAATCCGCCGTTCTTGAGCATGTTGCCCTTGGAGAGC
GTGGGCGGGTAGAGGGTGCGGATGGCGACGGCGTCGATGAGCGGGCCGCAGGCGGGGTCC
TCCTCGACGCCGGGGTTGTGGATGACGAGCTCCACGACGTCGAGCTTGGCCTTGAAGGCC
CAGGCGTACGAGTCCCAGCCGTTGCTGCCGTAGATGGTCTGCATGGGGAGCACGCCCGAC
TCGGGGCTGACGGAGACGTTGAGGCGCTCGGCCTGCGCGCAGGTGCGGGCGGCGCTGAAG
GTGACGGCGTAGTAGGAGCCACGGGCGACGGGGATGCGTTGGAGGATGGAGGCGTCGTTG
CCGAGGCGGACGGCGTAGGCGCCCTGCGGCACCACAAGCAGCATGTCGCCCTGCTTGTGC
CCCGACTCGATGTACTCCACGAAACCCGACGTCTCCCACTTGGGGATCGCCTTCCCGCCC
TTCACCACAGTACCGTTCACCAGCTCCGACTTGGCCGGACCCAGCTCGAAGTTGCCGTTC
GGCAGGAGACCTGCACATGCATGCACCAACCCATCAGAAATAAAAATGGTTGCATGAATC
TTAGCATAAAATCAATGACATACTTCCTCTGTTTTTAAATATAAGTCTTTTAAACGATTT
CACTAGATGTCTACATACGAAGTAAAATGATTGAATGTACACTCTAAAGTATGTCTATAT
ACGTATGTAGTCCACTAGTAAAATCTCTACAAAGANNNATATTTAGAAACGGAGAGAGTA
GATTTTAGATGCTTTAGCAAAACTGCAAATAAATTGCAGCACAGTAACAATTGTTTCAGT
TTCCGGTGTTTTACTGAGCATCTGCTCGAGGCCGGCGTGATCCCGTTCGGTTGCTGCGGC
CATTACTGCCCGAGTCGAGCTAGAAAGGAAAGCAAGCTGCAACTATCATGGAGCACGCAG
GGCTGTCTCCCATCTCATGCCTCGTTTAAGAGCCACCGACAGAGAGACGTCCCATCTCGT
GTAAGCTGAAAGGGTGCATGTTACTCTGCTTTAGCGAATGCTACCCACTTCATCGAGCGA
GCATGCACATGAAGGACGCAGAGCTCTGCGGCGGTTTCTGCAGACGTATGGGGTCGAGGT
CGATGCAGGCAAGCCAAAAAGGAAACCGAACTGAACCCAGCACGAGCTCACGTTACGGCA
AGTACACCAGTAGGTAAAGTACTACTCCTACTTGGTTGCAGAGTGAACGTGCACGCTGCT
CGGCAACGAGGCGGCAGACCCCTCAGGACACCGCGTCGATGAATTTCATCAAATCGTATA
AAGAAATAAGGTGGGCATGCACTCCACATGCACGGCAGATTCGCGCCATGTGAGGGTGGG
CCGGCCGACAGTTATACCCTACGTCAATAAAATCAGATCATGATCGCACTATGCTTATGA
CAGCGAACCAAATAATCCCATCACTTATCTCGTCATGTTACCAAGATGCCTCATGCATGG
TGGAGGGTCCTTGCATGCAGCAGCCAGACCCAGCCAGATCAGTGTTGTGTGATCACAAGA
TGCTCCTTGATGCGTGTGGGCCAACACATGTATAATGTAACTATACTTGCTTGTCAGTCA
GACTGGGTCAAGTACTCTACCCACTGCGTGTATGTTAGCCTGGGGACCTCAGAAATCATG
TATGCTTCATGAATTCTTTTTCTAGTCTGAACATCGCAGTGTTAGTATGGGGAGTACAGG
TTTACGAGTAGTAGTTATTACTTACTATGCCGTCCACTCCAAATCCGGGCATTCAGGTTT
AAGAAAAACCAATCAAAGTACAGCGCCTCAAAGAAGAAAAACAGCGAATGCGACATGAAG
AGGACAACAAGAACGGGCAGAGAAACGAGGAAGAAAGGCACTTCTCTTAAGCTAACTGCC
GGTACATAACGGAGCAGAGGTGGGTTTCTCACCGTCGGTGACGACCGCGGCGGCGCGCGC
CGCCACGAAGACGAGCAGCAGCGGCAGCACTGCACAACGCATCGCGGCGTCCTCCGTCTT
CCTCCCTCCCTCTCTCCCTCTGTAGTTTTCCGCTTGAGGCTGGTTGAAGCTTTTACAAGC
TGAAGCCGAGGGTGGAATGGATGAGACCAAGGGAGGAGCACGGCCGCGATTTATAGGCCG
TCTCCTCGTCTAAACGGCCTCGAGGCACGCCCGTATTTGCGGCGGAAATGCCACCGCTCA
ATCTGGACCCTCGGAGGCGGGACGGACGGCACCGACGGGACGACAGGTTTGGAGATGGCG
GGTCCTGTCCTCCTGCATCCATGTGCGTGCATCGACCTCAGCTGACACATGCATGGTGGC
CATGTGTGCATGTGCATGCGCCGGAAGCCATGCGACCCTTGCCCCTCCCGAGCGGATCTG
ATTGCATGGGATGATCAAGACAGGCATGGAAACGGACAGAGGGGAAATGATTATTATGCA
AGCCCGGGACAAGGAGAAGAAGCAGCAACTCGCTTGCACTCCACAACAAGAACGGAACTA
CTACCTTCAAATGTGGCTTGGGCGAATCTGCGTGCTTAAAATAAATCCTTGTATATTTTT
TCGTAGGAGATGACAAGTGCGGTGTAATCCTTTGTAGTAGTACGAGTAGGCTCTTCCGGC
TCCATGCATCCAGTCAATCGATCATCCTCAATCTTTCACCGAGAAAAGAGGGAGAGGGAG
AGGGAGAGGGAGAGAATCAATCGTCGTCAAACCGGGGTCAAGGAGTGCAGTGGTAGGAGG
AGGACACGAGTCACCGCGGGCGGGTGTCCTGATTGCACGCAGGTGCATGTGCCTCTCCCT
CTCTATCTGTGCTCAGTGATCCAGGTTCAGTGATGCGGTGCCCCATAAGACAAGTGATGG
TTCTCTATCGTCTCCATGTGCCGTGCACTGTCGGACGCACAGTGCCTGCCGGCTGCCGCT
CTGCCATTGATACAAGGCCAGATCTTATCTCTAATCTGGAGGCCATGTGAGGCCGCATAT
GGTGCCGCTAGCTTCCCTTCCCGGTGCCCAGGCGCCGATTTCGAGTTTGGCAAGAGACAG
GTGTACGTGTTGTGACCGATGGGTTCGCCTGCCTGTTTCAGGCTTCTTTAGGGATGAGCA
GTGTTTTGTGCTACGCGTATGATGGGATGGACCCAGGGGATCTTAAAGGCGTGGTAAGAT
CAACCCGGATGAGCTTGTGGTTGGCTTTTTACAAGAATAATGGTATCCAGCTCATAATAG
TTCAATTTCTACGTATAGTTGTTTGCATTTTCTGAATTTGTTTCAGCCTTTCCATGTATG
TGCGTTTAGAAAGATGACATTCACCAATCAGGACTAAAAGAATGCATATATGTATCCTCG
TTCATGTCCGCTCACTTCTTTGTTTTTTGACCGGTCAACGTGTGGGAGTTGTGTGTTACT
ATGTTCTCATCATCTCATCTCTACTATTAAAGGGGATCTGCCGTCGTAATGGTTCAACCT
CCTAACGCTAGCTATCCTTCCACCCACATCCTTTCACCGATTTTTTTCAACCCTTCAAAA
ACCAATTGGTTCAATAAAAAAACCACTACAATAAAAACACAATAAACTACGCATCAGGGT
CGTGCTCTCGCGCTGTCCACGTCGGATTAGCTACAGACAAAAAAGACCGACGGTTTACCC
TTGGTTGCCCCGCCGCGTTGTTTGCTTCGCCAAGAAGAAGAAGAAAGATAGAGATGAAGA
GGAAATCGCCCCCACCCCTTCTCCCTCGACGCACGCTAGGGTTGCTGCTGCCACCGCCTC
GTCCCATCGGCCTATGGCCAGGTCCTTCGACGCTGGCCACCAGAGAAAGAAGCGAACTCG
ACATACAGTCACCCGCGCCTCCTTTCTTCCCCTTTCCTCACCCGTGACCCCTCCTTTGTC
GTCTCATCTCCAACCCCTTTATCTTCTCAATCCGGATCCATGGATATGGCCGGCAGGGAA
GACGAGTATGTGGAGGAGGACGCTGACGGCGGCGCCAAAAGCATCTCAACAAGAACTATC
GTCATGCGGAGGCAAGTCACCGTCGACACGGATTCGTTTTGTCTGCGCTGCCAAGGGCCA
AGGGCCAACTGCCCCAGATCCGACCAGGTACCAAGCATCCTACCTTTTCCAACCGCAGAA
TCTATTTCCATGACCAGGCCTGCTCTGTAGCTTTTCTCCTACATTTGCATGCTCTTCTGC
TTCTCCTCTCACGTCCTAGGGGATACGCTTGTTGGGGTCTGAAAAAACTGCACGCATGTT
CATGTTCAAACGATGCCACTCTCTACGCTTGTCTCTTTCTCGTGGGTAAATTGAATAGAT
ACATCCAGAAAGAGCTCGTATGCAACAACAAAGCATCACATTCTTTCTACAGTAAGAATC
AATCTCAACGCCAAAAGCCATAGGAAGACCAAAAACAAAGAAACTATCAGCGTACACTGC
ATGGATCTTATTTAACTTGGCTTTTGCGGCCTCGGATCTGCCCCTACCGCATTTGCCAGG
TTGCCATTTCTGCAAAACATCCAATTTATTTAACCAGTGGTATGTGAAACAGAGGAGCCA
AGAAACAGAGAAACCATCTAGCAATCTAACATAACAGAATAGAGCTAGAAGAGCAGAGGA
GGGAAACAGTCGACTAACGGACCATGGCGAGCTTCCTGATAGGCAGTGCGCAGCTCAAGA
GAGGTTCAGATGAACCAAGTTACTTTGAGCAGTGCATGTGACAGTAGCAGCCCTCCCCCC
CCCTCCCCCGGAGAATTAGCAACGGTGCACGGGTACCATGATGCCCGTTTTCGAAAATCA
TATTTCTACAACGTAAAAAAACTGAACTTTTTGTAGACACACACAAACATGTATATTATG
TATGTGCAAAATTGCAAATCATTTTACTTTCACACGTGGCATACAAAAAAATGAAAAATA
TGTGTTTTTAAATGGGCTTCTTTTTTTGTTATTGGTCCTAAATTTTGTTATTTTTGTACA
GCTTACAAATTACATTTTTTCAAAATGAAATTTCACTGATTCGTAATGAATACATAGAAG
TTTCCACATAATTATTTTTGAAACTTTTAAATATGTTTTTCGATTTTTTTTCAAAAAAGG
GCACCAAGGTGCCCGAGCACACAAACTTCGTTCTCCTCCCCCCCTTTATATGTTCTATAA
TCTGCATATTTTGTTGTAGTGGCTGCAATAAGCCACTAACTAAGTTGAATCGCTCAATAT
ATGCTACCATATGGCATGTATTAGACTGTTAGTTGATGCAGGGGAGTTGCAGGAATAATA
GGTGTT