morexGenes - Barley RNA-seq Database

Contig contig_136277

Source Contig contig_136277

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_136277 (5185 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location

Predicted Genes from contig_136277

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5440	1	234 bp	None	Available	Available	None
MLOC_5441	1	964 bp	MLOC_5441.1	Available	Available	LOC_Os06g09820.1, FRAME:-2, EVALUE:4e-114, 13106.m01057 protein cupin superfamily protein, putative, expressed

CDS Structure of MLOC_5440

CDS Structure of MLOC_5441

Contig Sequence (5185 bp)

>contig_136277 5185 assembly3_WGSMorex_rbca.fasta
TGTCAGGCGTTGAAAGGGTCCGGGACATGTTCCCTTCCTGATTGGTTCAAGATTATATTT
TTGGGCTCAGCAAAGCGAACTAANCCATCGGTTCTTGGCATTTGCTTAGTTTTCCTCTTG
ATATATTACCAGCTTCTTGTAATGGCTTAGAGAAGGGCTGGAAAACATCTAGCTACAGGG
AAGGGCGTTTGCTAAACAGAAATTCCTTTTAAATTGTTATAAATTTCAGTTTAGACCAAA
TGTTATAAAAACCTGACATGTTATTGTGGCAACCATTGTGATAGACAAATCAATTTGGAT
AATCAAAACATTAAACTTATGATTACACGTGCGTTGCACGTGCAGTGTTACTAGTAACAA
TATAAGACCATAACATAACTTAGTGTGTTAGGCTGGTGTCGCCAAGTCACAATTTTTTGA
TGGTATATGTTTAAGACAACCAACACTTTGGCTTGGTTATGACATGCATAATTTATTTGG
CAGGGGAAAAGGCAGAATAGTAAAAGATAAAGGAACCTCTCAACATAATTTATTGATTAA
TGCTCATAAATGAGCAGATCCGCCCGCAAGGTTCAGAGCGAATAGCACTGGCTGACGGAT
TTTTTCAACAAGAAAATTTGATGGATTAAAATATATGTTGGAGATCCTAGAGAAGGTTTT
CATTTACAAACATTTCGAGCGGTTAGGAAATCTCATAAACGGTAAGCTGCAAATGACATA
TTCCATGTCCGGGCCATGTTTATGTTATTTCCACAATTATACTATAACATGGACATCATC
ACCTAATATAAAGAGCAAGTCCGTTTGTACTTTCTTCTAGCAAGAAGTCAGGGTTTAGAA
ATACAGGGGTTTGCACATCCAAAATAATTTATATAACCCCGAGTCCCTTAGTGCTAACTA
CTTCACTTTCTCCACTAAAAGCAACCACTATGGTTTTCAACACTAGCTATAGTGCACGTA
CAAAGCATGCTCGACTAACATAAATCAAACATGAAAAACTAGTTTGATTGACATTTACAA
ATATAGTTTCTTATTCGTACATTTATTGTTACCTTGAATTGTTTTGATGTGCAAGAAGAC
ATCAAAATCCATGGATCACAAACACAAATTTATAAGTACACGCATTGTGCACTGGTTGAG
AACATCAATGTGCATAACTCAGGAAATAATGACATAAAACATTTTTCTGAATTAGAAAAT
AGCACATGAACAACAAACTTTCTGAGCATGAGAAACAATAAATTTCTTTGTGCACGCAAA
CCAAATCAGAGAGTAATTAGGAGGCAATGAGTACATGCGTGATTGGGGGAAGAGTTTAAT
CTTTGTCCGCGACCATTGGGGTGGATAATTATGAAATGAAATCAAACATTCCGGATGGAT
CAGATTTGAGCATTGGCAGCAACTTTTATAGCCAAACAAGATGCTGACCTTGTTATCTTC
AGTTGATTATACGGGCACAACTCATGAGCACCCGCCCAGACCAAAGAATAACGCAGGAGT
AGTAATTAACATCACTTAACCGAGCCCCAGCTCACAAAAATGGAGTGCATGTTCTAACAA
AAGCTGAAGACCAACTGCAGCACGTTGATCCACTGTTAAGCAACGTGCATACAGGACACA
TGAGCCGGCAGAGCAAGAGGAGGAGGCTCGGAGCTAAGCACCGGCTAGTGGGTGTTGTAA
TTCGAATTATCCGTCAATAATTCCTGGTGCCTTCTATGCCTATGTCTATCAAATTCATTC
CCTTTAGTGGGGAGACGCAACAAATAATGCATGAACCAGGTTCTAAGACACAAGTAAACC
GAGGAATGAGTTATTCCTTGGGAAGCCTTGCTCCTTATAAAATAGCTGTGTGGGATAGAC
AGTGGCTTGAAATCATTGCTCCTCTTGTAGGTCAATAGCTAAGAACCATTTGGTCATGAG
CTTGGTCCTTTGGTAGGTCAGCCACCATGAGAGCTTTATCAATCTTTTAAACCAATTTGA
TTAATATTTTCAACCTATAGATCTAGATGTTGCACATAGCCAACTAACAATTTATAATTA
CAAAGTTCATGGCAAATAAAGCCCGACAACTTACATTCCATCATCAAAAGAAAACACTGG
GTAAGTAGAACCGACATCACTTAGCAACTTATCACACGGTGATCAGCATCAACCATAATT
CGGGAGTCACGTGGAGGGTTCTATTTAAATGTAGGTAGTCCATGCTTTCTATAGAGCGGC
ACTAGTTCATGTCACCAGTTCATGCTCTTCAGTTTGAAGTTAAAAAAACCACCTACTGAA
CATAAACTACTCAGAAGAAACAAGAGCAAACCATACAGAACTTCCATACATGACTATAAT
AACATGATTGCATGAACATCAACTACCATACTAAGGTACTCTCCAAAGTCGCATAATTTG
ACATCGTATCACACCCCTAATATTCAATTATAAGCAGACAGACGTTCACCGCAAACAGCA
AGCTACTTGCAGCAGCAATGCACTAAGCTGGAATAAGGTAATTAATGAAAGCTTCCGCGT
TAGGAGCCAAAGTTTTCATGCCATCGCGTGTGGCCATTTCATCATCCTCGAACTGGTATG
CCGGAGCACAGGTCACTCCAACGAAAGAATAATGCAGGTCAGGGTCCCGTCCGGGTGTCT
TGACAAAAACACTGCCGTCATCAGTGAAGGACTCGATGTCGTGGGTCAGGAAGGCGCCAA
ACCACACGTTCGGAGGGACCGTGTACTGTGGCCTCTGCCCTTTCCGTAGATCAGGACCGA
CTACTGTCATCTTAACTTGCCCATCATCATGCACCTCAAATACCTGAAATGGGTATCATT
GGCTAAGATCGGCAGTATGCTTAGAGAGTGATAAGATATTTTGTTCTGCGGTAATTTTGC
AGACCGTGAGAGGTTCCCCCATGTAGTAGTGCCATGTCTCAGCGCAAGGGATGCGGTGCA
GCCGAGCAATCTCCCCAGCAGGCAGGAGGAAGTAGATTGCACTACTCACAGCACGCTCCA
CCTTATCTACACGAATTAAACACAAAGTAACCAATTAGCAAAGTACTGTTGCTTAACAGA
AGCTATTCTTCAGAAACCTCAGCACAACCAAGTGATCAACACATGAGTTTCCTTAATCCA
ACCTTTAGAAACTAAAACATATCAGAAATGAATAGACACTGCATTTATAGTAGGCAATTA
CGAAAGTTTGAGTGCATGGTGCTTGAAAAAGTGTGTATGGATATGTCCATGATAAGGTTT
ATTACCATAGGTATGAGTGTCTTGGCTATTCAGTCTGTTTGATGGTCTGTTTGTTGTAAC
ATATGAAAGTTAATGGCTCATGTGAGCTAAGAGATAATTCAGTGTCTCATTGTTCTGACA
GGAGAGCTCGTAGGCATAAGGATGCTAAATCCTTTGAATGTTTATGTGTCTTGTCATAGC
CCCAAATTCACAGTTTACAGAAAAATTATACCACAAAATTGGCTAAGCAGAGTCGTGTAA
GAACAGAAGACCATAAAAAACACTTTAACGTTCTAGGCTCATGTCACCAAGTCATGGATT
TTGATGGTATATGTTGGAGACAACGAACATTTTGGCTTGGTTATGACGTGCATAATTTAC
TTGGCCAGCAAAAAGGCAGAAGTATAAAAGATAAAGAAACCTCTCAACATAATGTTATTG
ATTAATGCTCATAAACCAGCAGATCCGCCTGCAAGCTTCAGAAAACTAGCACTAACTAAC
GGATTCTTATACAAGAAGAAAAATCTGATGGATTAAAATATTCGTTGGAGATCCTAGAGA
AGATTTTCATTTTACAAACCTGTCGAGCGGTTAGGAAATCCCATAAATGGTACTTGGTAC
TCCCTCCGTCCCATAATATAAGGGCGTATTTTACACTAGCGTAGTGTAAAAAACGCTCTT
ATATTATGGGGAGGGAGTAAGTCGCAAATGACTTATGTCATGTCTGGGCCATGTTCATGT
TATTTCTACAATTATAGTAAAACATGGACTGCAACACTAAATATAAATAGCAAGTCTGAT
TGTATTTGCTCTAGCAAGAAGTCAGGGTTTGGTAATGCAGGGTTTTGCACATCCCAGTTT
GGATAACCCTGAGCCTTCCTGAGTGTATGTAATTAATATTAACTACTTCACTTTCTGACA
CTAGTCATAGTGCAGGTACAAAGCATGCTGGACAAACATAACTCAAACGTGAAAAATAGT
TTTCTTGACATTTACAAATAGTTTCTTATTCGTACATGCATTCTTATCTTGAATCGTTCT
GAGGTGAAAGAAGGCATCAAAATCCATCGAGTCACAAGCATAAGAAATTTAGAAGCTTAC
ACAATGCTCGTTGTTTGAGAGCATCAATATGCATTACTCACGAAATAACGGCATAAAATA
TTTTTCTGAATCAGATATCTCATTGTTTGAGAACTAGCAGCAACTTTTCGTAGCCAGACA
AAATGCTGGCTTTGTTCTCTCCAGTGGATCACACGGGCACATCTCACGAGCACCACCCCA
ACAAAGCAATGACGCAACACCCAAAACCAATGGCGATGTTTCCTGACCTAAATCCAATTA
CCATCATCAGCTAACCCACCCCCAGTCCACAAAATGGATTGCAGTTACTAACAAGCACTG
AAAAAACACTGCAACTGGCGCTTCTACAGCTCTCGAAGATCTACAGTCCTCTGAGTGGTC
TAACCGAAGAGCGCGCAAGCCCAACGCGAGATCAAGAAACCTCCGCGAACCCCCTAAAGC
TGCGGTTAGGAATCCGAGGCGAAGCTTACACTGGGGCGGGAGCGCGGACTTGGGGAGCGC
GAGGGAGGGGTCGCGGAAGGTCTCCAGGTAGAAGCCGCCGTGGGGGTGGCGGTGCAGCTC
CAGCGCCGCGACCACCTCCGCCGCCGTCTTCTTCTCCGTGCTCGACGTCGCCATGGATTC
CGCTTTGCCTCTCCCGGTCTGGTGGTGTGTGCCTTTCCCTTCCAGCCGCGTCCGGCTCCT
ATCTGGTGTCCTGGAGCAATCCGGGCCGTCGAACGCGATAGATGGCCCAGCAGCCAACGG
CTCGGATCGCTCCACGCCGAGCACAGGGCACTTTACCTGGCTCGGTCGGGCGGGCGCACG
CGCACTACGGAGACCCACCCACGAACCCACCACCACCGCCACCGCCGCCCTGACCCCCAC
GCGCGGCGGCGCCGCCCCGCTCCCC