morexGenes - Barley RNA-seq Database

Contig contig_136173
Source Contig contig_136173
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136173 (6940 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_136173

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5356	1	277 bp	MLOC_5356.1	Not available	Available	None
MLOC_5357	1	659 bp	MLOC_5357.1	Available	Available	None
MLOC_5355	2	4323 bp	MLOC_5355.1	Available	Available	LOC_Os05g05140.2, FRAME:+3, EVALUE:4e-162, 13105.m00528 protein expressed protein
CDS Structure of MLOC_5356

CDS Structure of MLOC_5357

CDS Structure of MLOC_5355

Contig Sequence (6940 bp)

>contig_136173 6940 assembly3_WGSMorex_rbca.fasta
AAAACAGCGTTAGTTCGGGTTAGTTTCATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAAGAGTTTGAAAAAGTAGATACGACGAAGACGTATCAATGGTCGATTTCTCCAAA
TTTATACACTGTCCGAGGCGTCTTGGCACCTAGTCTAAACACTTCATTGGAAAGGGGAAT
TTAAGGATTCGTCCCATGTTTCCCAGCACTTTGAGGAATTGCCCTTGTTTTTCTTGTAAC
TAATAATTTGCCACAACTTTGCGTGCAGTTTGATGATTTGCCCTTTTTAACCACTTCACT
TAGTTTTTAGAATACGCAACAAAACGGATGACCAATTTATCCTCCAGTTCAGATTTCCCT
TTGACTGCTTGCTGCGCGGGCGGATACGAGACACGGTCACAAAACTACATAGACATGAAT
TAGGCCTGGACATCCATCATTGTCTACATCATTGGAAGAAGCTAGCCAGAACAAACTTTG
ATTGATTGAAGCAGAAATCAAGAAAATTGATTGCTAGTATTGCGTCTCTCGGTTCAGTCA
TACAATACTTTACTGAAAAAAGACAACGAATAGAGGTGGTTGCTGGTCACAGCCGCCGGG
CCTATCTTGCATGGTCACGCGCCCTGCAAGCTGACCATGTCGTTGCTAGTATTGTCCACG
CCGCCGGTAGCTGCTGCTTGTTGCAGCTTGTCCATGCCACCGCTAGCTGCTGCTTGTCTG
CACTGCTGTTCAGGTCGTTGGATCCACTGCTCGTACACCATGCAGTACAAGTAGTCGAAG
CCGGCGTCACCAAGTTACAGTCGAGAGAGGTGACTTGAAGGAGATGGACCGAGGCAGGGC
CTCGGAGAAGGGGAGAGGGAGGAGTGCAGCTAGCCTCCTGGTCGCTGCCGCTGTTAAGGT
AATCTTCTCGAAGAAATTTCCGCCACAACAATGCGCCGTCACCCGATGCTTGGGAGTTGG
GAGGGAAAGTCACCGCCGTCGTCCGACGCGACTTAGTCGGCTCGGGAAAAAAGACGAGAG
ATGGGGCTCAATCATGTGTAATGCAGGGGCGTTTTAGAAATTTTTCGTTGGTCCGTCCTG
GCAGGGGCAAACCATCAAATTACGGACAAAACTGTGGCAAACAATCAGTTATGAGAAAAA
CGAGGGCAATTCCTCGTAGTGCTGGGAAACATAGGGCGAATCCTCAAATTCCCCCATTGG
AAAAGGTCTGACCACGAAAAGAAAAACTCACATCCCTCTCTTGTATGGCCCCACCCCGCG
GATGACGAGTAACGAGTTCACCATGAATCGAGGAATCCGTCATCGATCAGATTCACCTCG
GCGGTCGGCGGCAGACGCCAAGACGCCCCGTCGGCCGCGCCCGCCCGCAAAAAATATCGG
CGCCCCGTCGACAGTCGACGGCACGGCAGCCACAGGCCACAAGACCACAAGCGGCAGCCG
CGGGCGCGCCCACACATTCCCGCGGTCTTCCGCCCTCCCGTGCCCCGCACTCCCGTCCCC
TTCGCGAACCTTCCTCCTCCTCCACAAGGGGAGAGGAGAGCGACCGCCTCACCCACCCAA
CCACAGCCACGGCCGACCAGCCCCAAGATTTCCCCCTCGATTTCCCCTCCCGACGCCGCG
CCGGGCGAAATCGCCGGTCATTTTCCCGGGGCCTCCGCGCCTCCACGCCGCACGCCCCGC
CCCGGCTCCACCATCGCCACCGGTAACTCCGCCGATTTATCCCCTCCCCGCCCACACAAC
CTCCCTTCCCTTCTCGTCGAGAGTTTCTCCTACTCCCTAGCACCTCTATCCGCTCCCCGC
GAGCGATGGTGGGCGACCTGTCCCTCCTCGCCTCCGCCACCGCCTCCCCCGTCCTCCTAG
CGCCATCCAAGGTACCTTCTTTCGCGCGCGCCCGTCCCCCACGGGCCGCCTACCTCAGCT
TCTGCCCGGGACGATGAATTGATGTCGATGATGGTGTGGCTGTGCAGGAGCTCCATGGCG
TCCTGCCGTTCCAGGGGAAGAGGTCCCAGCAGCAGCAGCAGGACGCTGGGAGGAGCGCCG
CCGTGCAGCTCTCCCCGCAGCAGCACCTCCTCGAGGGCGCCTACCAGGCGCAGCAGCCCC
TGCAGATGATGGTCCCCGGGATCGGCCAGGCCGCCGCTGCCGCCTACCAGGCCTTCGACA
GCGCCGCGCTCATCGACGCGCAAGGTGATAAACCCGTTCTAGCCGTGCCGGCGCGCGCTG
ACTCCTCAATATGATGCTGAATGTTGCCATATACGCATGCCTCGTTTGATCATCGGATGC
TGCAGAGGTCAGCTTGACCGAGAGCCCATCTGCTCATGAGCTTAACGCTTTTGCCTCGTC
GAAGGTTACAACCAGCGTCAAATCCTGACCCAGCGTGAAAGCAAGTATTCTGATTTACTG
AACGCAACGATATTTAAAGGTTGCTGATTGTTAACCTAAAGAAGCGAGAATCATGATGCA
TGAGCCGTGGCTTGCGGCTTTAAAAAGTGACAAAAAAAACCTCTACATGTCGACTGCTTT
GTTCTGTGCTGCACGCAGAAGATTGTCGACCGAACTTGCACTGTATTCAACAAGAAGCAT
GCTGCACGAGCCTTAGCTTGCGGACTACAAAAGTGATACAAAAACATTCCTTTTGCAAGT
AAACTGCTTTGTCTGCGTAGCAAGCAAAATCTATTGGACTTGACTGCCTTTTTCAAGTAG
GTTGGCTGGTTGTGACACTATGATATACATAGTCCTGGCCAAGGTTAATTATGTTGCCAA
GTAGTTTATCCTTTGATTCATGGTTTATCCACCGTAAAAGTCAAGTTCTACATATGTTTC
AATCACTGATGGCTCCTGTTTATTCATTTGTAACAGATTCCCACCCTGATTCGGTTCGAC
TTAGCCTTGGGATTGCTGAGCAGTGTGCAAGGCAAGAGAAAATCCTAAAGTTTCTAATGT
CAGGGTCCGATGTCAAAGAACTTGACGCCTCTTTGCTTACTGAACTTACGGGACATCCGA
TGCTATCAGCTAATATGGGTAGCCAACCATATACTCCTGATGACAAGTTATCTGTATATG
AGTTTGGATTGGAGGAGCCTCTGCAGTATCTAGCAGAAAATCAACTTATCCTCCCTGATG
ACAAGTTATCTATCTACGAGTTTGGATCGGAGGAGCCCCTGCAGTATCTATCAGAAAACC
AACTTATCATCCCTGATCCACTTTTGGAATTTGCTCAGTCCCAAGGTGCCCTTGCTATAG
ATGAAAATGGCCGGGTCATCTTCACTGGCAGTGGAGAGGAGATGAGAGACTTACTTTCAG
TTTTCTTAGAGTTCAATGTACCTAAACGAGAACCAAGTGGTTGCAAGGCTGCATATTTAG
TTCCATACTTCGACAGGTAAAAATGGGAAGCATCATGCTCCATGTGAACCCTTTTCCTCA
TCTTATTCACTCAAGGTTTATGTTATGCATAGTCCCCTCTCTCGGATAAGGGAATGGTCT
CTTTATCAATTTATGTTGTCATTATTGATGTATTTATTTACCGAGCGAAAGTTATAGAGT
TATGGGGTTGGTATAACTTGGTATAGGATATGTATTTTGTTGAACTTGCTGCAGCTGGCC
CATTAATTACGTCTGGTTTTCATGACGTTGTCGTGTTTAAATTACTCCTAGTCAGCTGCA
CATGCTGACACGTGGGTAACTGGACATTTGGAATCATTCCTGCTCAGTAGGACGCATACC
ATATATGTTATCTTTTTGAACTAGGAAACCATGTCTATTATGTACTTATCGCAGAAGAGT
GATTTACTATAGCTATACAGAAGTAGAAACTACTGAATGCATGCAATGTTAAAATCATCT
CTCAAGTATTATATTACCATTGGATCTAGAGGCGGCACTTCCTTCTGCCTGACAATGATT
TCTTTAGAAGTAATGATCGATTGTTTCTGATTTCTGTACCCCTTCAAAAAATTATGGTTA
ATAATTTATATCAACAAATAACATTTCTATCAGGATGCATACCATTTTTATTTCTGTCAA
TTACATGATATAGAATTTTGTTTTTTTGCACAAGCAGGAAAAGGGGCCGAAATAGTAGTC
AATCCAATTCAAAATCAGCAAGCACCGCAGTTGATGCTCCAAAAAGGTAGTGCATCTTTC
GTTAGTTATGTATTACTTCATTATGTTGTTGTTCTCATGGTGTACTCAATTATGGTAACT
TCCCTGCCTAGCTCTGATGCTTCTATGTTTCTTTGGCCTGCTGGTTACCACAACATATAC
CTCCCTGATGTTTACTACTTTGGTAATCACTTGCACCATAGGTTAGGCATAGAGTGTGAC
AATTTTTGTATTCCTTCCAAATTCTGATTGTGACATGTTAGTTGCATCTAAATGTGGAGT
CCCTGACCCATATGCACCCACAAAGTGCAAAAGAAAGAACTAGCATTTTGTATTAAGAAT
TTCCTATAAAAATCAGCAAATACCATTTGAAACAAAGCCATTGTTGTTTCAATATCCACT
TTAAAATATAGACCTTGATGCACTGATGAGGTTTTGGGTTATATACCAAATAGCATGGTC
CCTATACCAGTAGTATCACAATGGATAATTTTGTAACCCAGCTGTCCAATTTACTTTACT
GGGCTAACCATTGCATGAAACAATTCCTTGGAACTTGGAAGGCGAACCTTACTGAATTGC
CTGAGTATGCGCATGGAAATTATTTTATGTTGGAAGTTATATACTGTGATATGGCAAATT
GCACCTGTTTATACGGTATCCAAGGGCATGTGCACATGTTAATATGTTTTCTTTATGATA
CTCAGCAAGGCAAACGTGAAGGCAAAATCTCCATCAAAGAAGAAACAGAAAGGAAAAACC
ATCAATGAGCGTGACATGTATCAGAATAACTATTTCCATGCCAGCGAAGCTTTTTTTTCA
ATCCTTCTGGACAAGGACAACAGCTCGACAATTCTCTCGCTGAAGAAAGCAGGTCCCGAG
ATCACTGAACTGTTGACACAATGCTCTATTGGTATTGCTGGAACTGGTCTGGCTGTTCTT
CTGTCGGTCGTGTGCAAGATCGCCATTGGCGGGAGGACTCCTTTTGCCGCTACTCGGCTG
CTGCACACAGGCGTTGGGTTTGGGCTCTTCTGGCTCTCCCACGCGGTAAATGGACTGCGG
AACACAATCACCACCGTATTCAGAGGCCCGGTCGACGCAAAGTTGGAGGATGAGGTTGCT
GTGAAGATACAAAGAAGCATGAACGATATTCTCTTCAGGGCCGTAACTCTCCTGGCAATC
ACTGCTTTGAGGTTTGCATAAGCTGTTCCTACACTGCTGTAACTTGACACACCTCGATGT
ATGATTACCCTTTTGGTTCAGGAGTGCGGTTTCTGTAGGACTAAAGTGCCAAATACCTTC
ATGATTCATGATGGCCTCATAGAAAATGTGAGACGTTGTAAATTGTACAGAATTTTGCTG
GCAGCTCGGTGTATATGGAAGATAGATTTTGCCTGTTCTGAACGTTAATTAAGCTAATGG
TCAATGTACTTTGTATTTCTTGCAGACAGATAGCTGCTTCACCCATTTTCCTGTTATATT
TTTTCTTGGTAACATAGCAATATTGGGATAGGTCTGTTGACATAGCAATCTTGGGATAGT
AGATTCGAAGGTTTCAACTGCTAAAAGTTTTGTGCAGTACTGCAAGTTAATGAAGTTACC
ATTTAACAAATCATTGCCTAACACTATTTTCAGCTCATGCTGACCACATCAACATGTCTT
CTTTTTTGTTAGACATAGGAGCATTTAGATCACTAAAGCAGTGATCTAAATGCGCTTATA
TTGTTTACGAAGGGAGTACTATTTACTTTCTGAATGTTGTGACATTCCTCAATTTAATTC
TTTGTTCCATAAAATTTAAGTATGGAACATTTCTCCATTAAAAAGTGCTACTCCCTCCTA
TCCAAATTAAGCGCTGTGGTTTTAGTTCAAAGTAGTTTTTGATTTTATATACGTTTCCTT
CATCATACATAATTCATCTAAGATCAATCAGTCTTTAAATTCGCATAGCAAAGCGGGGGG
GAAATAACGTGCCATCATGCCAAGGATTAGAAACGAACGATTGGCCTTTTATGGTTGCTT
TCAGGCAATCGATACAGTTTCTCATCTTCCATGTCCTTTTCTCTGGACTTGTCTTGTGAA
CAAAATACCAACGTCACATTCCTACTCTTAATTTATTTTTTCTGTCGTAGTTGCGCTGAT
ACTCTTTGTTCACTCACAATGCATATGATAATTTTTTACATTAAAAGACATTGATTCCAT
ATCCTTTCAGCCACAAGATTAGAAACGAAATCAATCACAAGCTGGCTAGAATTCAATCTT
TTAAATCCCCGTAGCGACGTGCAGGGAAAATCACCAGTATTTAACATATTTATATATATA
ATCTGTGCCCTTAAATGGATAAAATCAAGCCAGTGATTAGTAACGAAATCAATCACAAGC
TGGCTAGAATTCGCTTCCAGGCAACCCATGCAGTTTCTTATCCTCCATGTCCCTTTCCTC
TGACCGTCCGGTAACCGAATTCACAATGTCACAATCCTCCCCTTAATTTCTTCCTCCCTC
ACAGCCACGCTAGCTCAATAAACTGAAATCAAAAGATAGAAAAAAAAAGAAGATAACTTC
ACGAAAGCGTGCGGTCCAAACCAAACAACGACACCCATCAGAACCTCTATTTATTCTCAC
CGTGTTCCCGCTTCTCTGCAAGCAACTGTACCGACTGCAACACAGTTCCTTCAGTAAGCA
TGAGGACTACGACCCGCCGTCTCCCCCCAGCTCCGGCGGCGGCGGCGGTGCTCCTGGCGG
CGTTGACGTGCCTCCTCCTCCGGCCAGCCGCCGTCGCCGCGGCGGGCGGCCATGCCGCGG
ACCGCATAGTCCGGCTGCCGGGGCAGCCGGAGGTGGACTT