| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
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Predicted Genes from contig_136119
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_5315 |
4 |
3070 bp |
MLOC_5315.2 |
Available |
Available |
LOC_Os07g08200.1, FRAME:+3, EVALUE:0.0, 13107.m00810 protein methyltransferase domain containing protein, putative, expressed |
| MLOC_5316 |
2 |
1234 bp |
MLOC_5316.1 |
Available |
Available |
LOC_Os04g45070.1, FRAME:-3, EVALUE:5e-43, 13104.m04514 protein remorin, putative, expressed |
CDS Structure of MLOC_5315
CDS Structure of MLOC_5316
Contig Sequence (8729 bp)
>contig_136119 8729 assembly3_WGSMorex_rbca.fasta
ATATTTCACTAGGTGTCTATATACGGAGCAAAATGAGTTAATCTATACTCTAAAGTATGT
CCATATACATTCGTATGTAGTTAATTAGTGAAACCTCTAAAAATATTTATATTTAGGAAC
GGAGGGAGTAGTTCCTAGAGCCAAATGCAATGTCTGAAGATTGCATCCCAACACGTCCCA
AACAAAAAGTCTGAGAAAAAGACAAGGGACAGAAGAGATCTAAGCACATGTATGAGTCAA
TCTGGGCCCTCAAGTCTACAACCACAAGGAGGAGGAGAAAGGGGGAAAACAACAAGAAAA
GAAATGATCGCTGCCCCCGTCTCTGGCGACATCCCAACCGGAGCGCCGCCGTCGCCAGCT
CCGGCGGCGGAGGACTATCCACCGTACGGCTCCGTGGTCCTAGGAGGCACCTTCGACCGC
CTCCACGACGGCCACCGTCGCCTCCTCAAGGTGGCTGCTGCAGAGCATAGAAATGGGCAT
GACTGTTTTTCTTTTTCTTTTTTGCCCTCCTTCCGATTAAATCTTTCTTCGTTGTGTTCT
TTGGGTGTTGGGATTGTTGGGTGGTAGGCCTCGGCAGATTTGGCGAGGGATCGGATCGTG
GTGGGCGTCTGCACGGGCCCCATGCTTGCCAAGAAGGAGGTGACAAATCTCGCCTTTTAT
CCCCAAAAGGTGCTTTTGATTTTCCACCCATGTTCATGAGTTCCTGGAGTTATGATGCTT
CTTGGTCGTCTTCTTGCCCCCATATGCAGTACGCTGAGCTTATCGAACCCGTGGAGAAGC
GCATCAAGGCCGTGGAGGATTACATCAAGGTTTGTGATTGTCTTGCCCCCTTGTTTTCTG
TATATCTGGTAGCAGAGATTTAAAAATGATTGGGCGGATAGGTAGTGACGAGGTCGATTT
GGTTGGGTAACTAGATCGGTGTGTTGCTTTTGTTCGACGTTTGTGTGGCCCTGTATGAAT
GGAAGCTGTGGATATGATTTGGTTGCTGAAAATATGGTGGTGAGTGAAAATTCTGCAGTC
GTATTGAGAATTTAGTTTCTGGCAAACAAGTATTTGTTCATGTGCATCTTGATGCTTTCA
GTGAGCATTTGGATTTTCAGTAGTGAGTGACTTTGGAATGAAGTTTTGTAGCATTTGAGG
ACTGACTTATTAATATTTGTGCATGCTGTTCTCGTTGCAAATGTTATTTTGTTTTTATGC
TTGATAGAGAATCCCCTTGTACAGTTGTACTAAAGAGATCTTCCTTGTTGTCTATTTTTG
TTCTTTGATATTGCAATGGTACATTTGTAAAGAGTTTCTGGAGATGAAATTAGCCTGTAC
TCGGATTTCATATACATGCGAATTTTTAGCGTTGGGAACAAGTGCTTATGGACTCTGAAC
TTTTAAGTGCTTGTCAGTTTCGTATTGAATTGTAGCTATGTGTGGGGTACCAGGAGCTAC
CAAAAAGTAAAAATGCCCATGTGTTTTTTGTTTTGTCTAGTGACCATTATAACATATTGC
AGAAGCTCATTACTGGTTTGTTGTAAATCGCAGTCTATTAAACCTGAGCTGATAGTACAA
GTGGAGCCTATTGAGGATCCATATGGTCCATCCATTATTGATGATAAGTTGGATGCCATT
ATTGTCAGGTATGTACATTTGCATTTTAGCTTTTCTGGCATTTAGCTATTGATAAATATG
CAATCTTTTTGTTCTTTCATGCATGTGATCTTACCAAAAGCTAAAAAAGTCATCCTTCCA
CTAACTTCAACACTGTACTATAAGCATCTGAGTTATATTGATGTTGAGCTTGCATATTAC
AGTTCCATTTTGGACTTGAAAATGATGTTCCAGCATGGCCCATCCTTATCATGCATGTCC
TTATTTAATTTAAGCTTTGCTTGCTGTGCCTCATTTGATGTGGGAATGTCGTTTATATTT
AGCAAGGAGACACTAAACGGTGGACTTTCTGTAAATCAGAAAAGAGAAGGGAAGGAACTG
CCGTTGTTGAAGGTGTGGTCATGTATTCTATATTTCCTATGAACCTGCAAGTGTATGGAG
CACATAGCCTAACTGATGAGCTTCATTGCAGGTTGAGGTTGTTGATCTTTTATCTGGAGA
CACCGAGGGAGAAAAATTGAGTTCATCTGCTTTAAGGAAGCTTGAGGCTGTGCAAGCTCA
ACAGCAGAAAGCAACAATAAATAATCAGAAAGGTGTTTAGAGAGGAAACATACTGGAATC
TTGAGCTGCATACACAAATCTGAAGTGGTCCGCTGAAGCTTATTATCAACAAAAAGGAAT
TATAAATGGCATTTTGGCTTCCTTTTTGAACGAATGGTCTTCAAACATTGACCTATGTCC
CTGTAACACTATATTGCTCTATTCTGAAGGGTATAAACTTACAAAGTCAATGTTGGTAAG
CTAGACTAACCAAATGTACACATATTTTGTCCTGGCATTGCCATCTAGTTGTAAAGTCAC
CTTGAGGTCGTTTGGAATAATGGTAACCAGCTAAATTAATTTGGTGCCTCTTCTGTGACG
TATTTATGTGATGTTTACTTCATAAGAAGGCATGCAATATAACTGTAGCATTTGCTCCGT
TCCGATTCACTGCTGTTTTTGGGCCTCTTGGCAGAAACCAGGTATGCACGATTTACTTTG
GTTGATTACGAGTTAACAAGAGTAATTATCGTCATGAGTCCTTGTAGTCAAGAGGTACCC
ACTTATAATTTAGGGCCATTAAGTTGTTTTAGGGATAGGACCAGTAATTATCTGATGCAA
ATGGTAACAATGCCTTTGTATGCTGTTTTTGTTGTAGTATAAATTTATGCAATAAATGCT
GGTAAGACTTGCAAAACAAAAGATTAATTGCTTATGTAGAATATATCCAGCAAATAAGGT
GTAGTAATATTTGAATGGCTAGTTCAAGATATGATGTGGCAAATCCACAACAATAGATTC
ACAACCCCCGTGTCCACATCAGTACAAGCAGAGCAGACAAAGAACCATCAAAATTCTAGT
TCACACACACACAAATCTTGCACACATGTCTGCTGGTAGTTCTCATGTTTCTGTGGCCTG
AAATTATCCCTGGCTTAGAAATGAGGTGACCAAGGCCAAGAACGTGTCTCCATGGCCACC
TCACAACTCACAGGAGCACTGGTACATGACCTCTATTTATTTTCCTTACAAGTCTATGGA
AGAACTCGCAAAGATTTGTGTAGGAGTTACATAGTTATTTTCCCTTTTGCTGGGTTTTTG
TTTGTTATATCCCCAGCATTTTCTTGCCCCTAGGAATTAACCTGTATACAATTTGATCTA
ACTTTCCGTACAGAGATCAAGAAATGGCTTGTTCGTCCACATATAGAGTTCCCAGTGGGT
TAGGATTCTTGGGGCCTTCCAAGATTGGTCGGAATCCTTTGAGGAGCAAAGGTGGTGTCC
GGTTAGGAGCAAAGTATGTGGTACCAACGTGTGCAGTCTCCTCTGCTAGGCCAGCGTCAC
AGCCTAGGTTCATACAGCACAAGAAGGAGGCCTTCTGGTTCTACAGGTTTCTTTCTGTAG
TATATGACCATGTTATAAACCCAGGGCATTGGACTGAGGACATGAGGGATGATGCGTTGG
AACCCGCTGAACTCTACAACAATGAGTTCAAGGTTGTTGATGTTGGCGGTGGAACTGGGT
TCACTACATTGGGGATTATCAAGCATGTGGACAACGACAATGTGACCCTGCTGGACCAGT
CACCACACCAGATTGAGAAGGCTCGGCAGAAGGAGGCACTGAAGGGGGTGAGCATCATGG
AGGGTGATGCTGAGGACCTCCCTTTTCCAACTGACACGTTTGACCGCTATGTCTCCGCTG
GAAGGTGATGCTCTTATACCTCTTTGTATATATTGATCTTATACCAGCTTGAGTAGGCTG
GTATTTTCTTAATCTCCACCCTTTCCTGTTGCTACTTACTATAGTAATGTCAATACCTTT
GTTATTGCCTGTCTTAATATATCTAGACTTGTATACCAATCCGATTTTACTTGACAAAAT
CCATCTGACTACAGTATAAACATTATAAACTCAACGGTTCAGTTGCCTGCCAGGATATAT
TAGGACTGGTGCAATTTGAAACAAATGATAATGCTCTTGTTTCCAGTAATCCATGATTCG
AGAAATGTTATTGAAGGCCTGATGCTCTGCTGGAAGAAATGATCTAACTATCTTCAGATC
TGTATAGACATGTAGAGATGCCTTCGGTCGATCCTTTCCTATATGTTAAGCTGCTGCTTG
AACATTGAAAAGTGTGTGTATTGCGACCTGGCTAGATTTTATTATTGTGAGTTGAGTGCC
ACATCTCTCATGCCTCTGTTTCATCAGCCATGCTTATCGATGGTGTTATTCTCCAGCATT
GAGTATTGGCCTGACCCGCAGCGAGGAATCAAGGAAGCTTACAGGGTCGTGAAGCCTGGC
GGGCTTGCCTGTTTGATCGGTCCAGTTCACCCAACATTTTGGCTATCTCGCTTCTTCGCC
GACATGTGGATGCTCTTCCCCACGGAAGAAGAGTACATAGAGTGGTTCACCAAGGCAGGG
TTCGAGGATGTCAAGCTCAAAAGGATCGGGCCCAAGTGGTACCGCGGTGTTCGTCGGCAT
GGCCTAATCATGGGATGCTCCGTGACAGGCGTAAAGAGAGCTTCTGGCGATTCCCCTTTG
CAGGTACATTCCGTGCTTCTGTAGCTGCCTAGCTGCCAGACTTTCTTTCTCCATCTTAAT
GTTCCAACTTCCAAGTGTGTTGCCGTCTCTTATTCTTTGGCATGCTGTTGCTGCAGCTCG
GTCCCAAAGCTGAGGATGTTGAGGAACCGGTGAATCTTCTTGCCTTCCTCTTCCGCTTCG
CCATCGGGACGATATGCGCGTCGTACTACGTGCTAGTGCCTATCTACATGTGGATCAAGG
ATCAGGTTGTTCCCAAAGGCCAGCCTATTTAGGCGATAGTAGTGAAGATAGGCTTCTATG
TTAGCCACCCGTAGTGCTTGCGATTCCCTACTCATGTATGTTTGTGCTTTTCTTTTCGCC
GGAATCTTGTTTATGCAAAGGGACTTTGTGCACTTGCGGAATTGTAGAAGCTAGGGATGT
AATATTCCCATTTATCGAATGAAATGCAAAGGAGCTCGGTGAAGCATCAAAATGCATCCT
CAACATGTGCCTGTGGAATGACATCCATATCTGCAGCAACCATGGTGAAAACTGCCATAG
AAATGAATAAGAGCTCTGGGACCAAATTTTGAACTAAAAATCTCAAATTTGGCAAGTCTC
CTTGTTGTCTTTGGTATATCCTGTATTCCTGCTGCCTACATATGCCCACGTTACCAAGAA
TACACACTTGAAAGAGGAAACATGCATTGTCATGTAAAGAGTAACATCTTATAAATAAAA
AACATGAGTCGAGAAGAGATCATACTCTGAACATCTCATGCAGAAAGCCATGAAGTCCCT
ACATCAGACACAACCGACATTACAAAGGAAAAAAGCAGAGCAGATACATGATTCAGCATA
CTAGCTGCAAGTAATTGTTTGATCTCAGACAACGCGAACAATGGATGCTATATATGTACC
ACCAAAAATCTGTCTTTGCAATTACATGTATGCAAACATGAAGAGTAGCTCCCAGCAAAA
AAAAGATAACATGAAGAGTAGCAAACTTAACCATGAAAAACAAGACACGTTTTCTGAACA
TAAAGAAGAAAAACAACTACACAGAACAAATCACTTCCAAGGTTGAGCTACTTCTTATGC
CCCGAAACATCCGAGAAGTTTCTTGGGAGCCAGCCCGGTTGCACGGTACTTTGCTGCCAT
TTCCTCAGCCTTGAGAACTTGTTCACCACGCCGGGCCACCACCATTGCTCTCTTTTCTTC
AGCTTCCCTGTGGGCAATTGCCTTTTTGTTCTTCATCTTCTCAGCGTATTCAGCCTTTTT
CTTTTCCAACTCTTCCTGAAGGCTCGTAAAATTCAACAACATTAGCCGATCAATGGATGC
ACATAAAATTCATCTAGGAGAAGTTGCTACATAGCATATTGAATAGATAGACAATAACTT
GTCAGCTAGTGATTTTTTTTTGGAGAAGTAGAGATAAATATGCAAGCCACTCATGGTTCG
AGAGAAAATGCAGGTCATTCAAAATCCCTTAGCAATAAAGAAATGGGACAACGAACTTGG
TAAGAACAAAATATACCAGAATCATAACTTGAGAAACATGAATTGAGAAGGAGAACTTAC
TTCCTTCCTTTTCAGCTGAGCATCTATGGTTGCCTTCTTTGTGTTCTCCCATGAAAGAAT
GGACGATAGCTTCTTAGCAGCCCTGTTGTGACATGGACAGCAACGGATTAAAGTTACGGC
TTTCAATTTATTTGGAGTTATGATTTGCAACTTATTTCCACAATAGATAGGATGTCGTAA
CGCAATGGGGGCACTGAATAGCAAAGCTTGAAGTGACAACTTTCCAGTTTTAAACTTGGC
ATAACAGAATTTTCCAGGCTGACCAGTGAAACATCATTGTTCATAACTTGCCTGTTCTCA
GCTAAATAAAACAGTGGTACTAAAAAAGGATGCTTCCAGCTCACTGACAATCCTAGTGCA
GAATGTACAGATCATGAATTAATCTATTATTGTTCAAAACTTACTTGTTGTCAGCTTTTG
CCTTCTCGTTCTCTACCCATGCTTTGATCAAAGAGCTCATCTTCTCCGTTTCGACCTTTG
CAAGAGCGACGTCTGAAAGCAGGTCATATTACAGTATATTGTTAGCTTAGCCGGCTGTAT
TCAACAGGGATGAGAGGAAGGAACAAAGTCGAACCATCGTTCAGTCACCTCTTTCATGTG
AGCCCCTGTGCGTGTTCTTCTTCTCAGCCTGAGGTTTTTCGGCAACTTCTGCACAGGAAA
CCGGAGCAAAGTTTGAGAAATCAGGTGCGATGACTTGACTGACCGAACCTTGTGGAACAG
AAAGAAACACATGGCGGGCAGGACAGGCAACAGCTGATGCACACATGAACCAGTTGGCGA
TGCGCATATGAACCCTTTTTTCACAGTTGAGAACGGCTAGCATCTCCTCTTGGCAAGAAC
TATTACCATGGCAAGAACTATTCCTGCCCGGCTATGTCGGCGTCAGACATTTGCCGCAGA
AGGCGGCACCGGAGGTCGACCGGCATGGGAATGTACCGGCAACAAGAGAGGAGGAGAGGT
TTGAGGAGCGAGTGGCGCACTCACTGCTGTCGACGACGACGAGGGCCTTGGAGTCGTCGG
CCGGTGGCTTGGCCCCCGGGGGAGGCGGGATGACCACCGGCACGTCCTTCTCTGCGACCG
CCTCCGGCGCAGCGGCCGGCACCGCCTTCTTGGCTTCCTCCCCAGCCATCACACACGCAC
GCACACAGGTGCTTGTTGCCGTGAGAAATTCCCGCAGCTGCTTCACTGTCTGTCACTAGA
AATAGCATACCCCAACTGCGGCTTGACGCGGAGCAATATATAGAAGGCAGGGGTTTAAGT
GGCTCCGCTGCCGTTAGCCTGGAGGAAAAGTTGGCCAGCGGGGAGGTGGAAGTGGAACAA
GGGAGAAAAATAGTTAGTGGGGCTGCTTTCAGCAGGTGCGTGTGGGTGTACGTGTGCGTG
GGTGTTGACACGGGAGAATTTAATGACGCGCGCATGGCATGGGTCTGCCAACGGAAGGGA
GGCCGTCCATCGGTGGTTTTCATGGCGCACACGCGGGCCGTGCCATCCGTCCTCCGTGCG
TCCGCCTCCTCTCATGCATCGGCATCGGCATCGCGCGGCCGTTGTGCCCGAAGGCGGAAG
GACCCGCGGACAGGGACAGGGACAGTGCGGCGGAGAATTGGCACGTTCGAAAGGGGAGTA
GAATTCTCACCATGTCCAAGCAGGTGGGAGCACAGTGCAAACTGGACTATTGAATTCCAG
ACCATTTTTGAACAAAACAAGGTTTCGGACCATCTTTTTCTAAACGCGAATCCTGGGGAC
ATATTCGCCGCGAAGCTGTGGATGCGGCTTAAAAACGATCGACCCGCAGCTGGAAAAACA
ACAGAGGCGAATGGTTCTTTGCCTCGCCTTCGCCTTGTTGGTACGGTCGATGTCGATGCT
AATGATCATTCCTAAGCCGCCTTCCCATCCCACTAATTGGGTCGTGCATCATGTCTCCAC
TTTAATTGTCTTCGTCCCCTACGTAAACACTAAACTGCTACTCACAACGATCATCCAATC
TCTGGACTGTATTTCACGCATTAAAACCCACCACGAGCCCACCTGCACTGACACTTTCAG
TTCAGGCCACCACCGGCTCCATCTTTCTACAAGAACCTTTCCAGCACCGCGATATTCAGG
ATGCAAAACACAATACTATCGCCATGCAAGAATACAAGGGATTTATAATGCTAGTGGAGT
GCGTCTCAAGGCATTTGGGCGTACCTACTCAATTAGTATACCCTCCTTTTGATAAAGACG
CAGTTTTCACATCGTTTGTGACGTGGAAACCATCTGGCTAATCGCTGATACGGGCTGTCG
CCGGCGCTTTTGATTATTGCTTCCTGCCTGCTTTGTTGGATCGCCAGTAGGCCTGGAAAG
CAAGTAAGATTTGGTGTCCTGCCAACTTGGACCAACCCAGCTAGACAAAGAGAGAGAAAA
AAACTCATACAAGACCAAAATATGACAAGATCACTAGTGGAAAACGGGCCTTTGGCCGGG
ACCCTTTAGTCCCGGCATGCCTCTGGGCC
