morexGenes - Barley RNA-seq Database

Contig contig_136111
Source Contig contig_136111
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_136111 (6570 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_136111

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5298	1	1014 bp	MLOC_5298.1	Available	Available	None
MLOC_5299	3	2214 bp	AK357805	Available	Available	None
CDS Structure of MLOC_5298

CDS Structure of MLOC_5299

Contig Sequence (6570 bp)

>contig_136111 6570 assembly3_WGSMorex_rbca.fasta
AATCCTATGATTCAAAGGACCAATGTAGGAAAAAATCCTAAGGGTTTCAATCCTCCAAAA
ATCCTATAGAATTCCTTTGAATCAAAGGAGCCCTCTTTGTTAAACCTATACGATTCAAGT
GGGTGGCGCTCCAGTATTTGGTGTGCAATTGACCCTTGACACTTGTTTATTTGATGTATG
TGGGGATGTATCGTGCAAGCGGCTGCGTTGCAGACCCCACGAGTCAGTGAAGAGGAGGGA
GTGGATGCACAGTCAAAGAGCGCTTGAGGTAGCTGTTGGTGAGCTGAGGGGAGCAACAGT
TGCTTGCTCCTCGTCTCACGGCAGCGCCATGGCCCACTTGCGGTAGTACACCACTACGTA
CAACTGCAGTAACAACGCTCGCAAGGAAGAGAGAAACGAAATGGAATACGAAACAGAGGA
CCACTTGCCCAGTTTTTTTCTTTTCCTTTGGAGAAGAAAACTTCCCAGTCTTTGTGACGC
CTCCACGACTTCGCCTCCCTCCGTCCACAGCATGCATTCCGGAAGGGCTAGCTAGGCCCA
TAGGCCCACTCACTCCAACGAGGCCAGCCGTCTACACAGATCAAGAGCCCATCATTGAGT
CCGCCAGACAGACTGGAGGAGACGAGGGCCAAAGGTCTGAAACCCCTAAAAAAAAAAAAC
ATTTCTAAAGACACGAAAAACCACGAAGAAAGGAAACACGAAGACGCATGCTCGGCGATG
GCCCGCAAGATGATACTCGTATGAAATTTTCGAACCAAGCCCCCGCAAAAAGGAAAAAAC
AGCCTGCTAGAATCATCATCGTCATCGTCTGCACGCGCATCCCATTGTTGCCTCCTCCAC
CTCCATTTACACAAAACACACGTCCATTCCTTTCGGCTAAGCTCTCTACCGGTTTTGTTT
CTTCTCCTACCACCCCTCGCTCCCGGCCACACACGGCATCCCCGTCTTCTTCCTTCCTTG
GCTGTCTCGCTTGCTAGACCTCTCCTCTCCTCTTCTTTGCGCTCTTCACTCCGAGTCGCT
GTCCATGCTCTCCATCCCTTTCAGCCCTCTTCGCCTCTGTATTCAAGATCAAGAGAGAGA
GAGAGAGAGATTTTTTGTCAGTGCCGAGCTCAAGAGGAAACCTTGATGGGAGACATTGTA
CAAACAGACGCAAGTAATACACTAGTAGTAATATACTGCTAGGTGCTTAAACAATAACCT
GGAGTATTTAACGCTACAAGCGCGACCTAACGCTGCAGTCTCTTTCGGGATTAAACAGTG
GAGTTCATGTTACAAGATTCCTTTCTCCAGATTACTACTAATAGCTAGTACAATATCCGG
GGTTTGGTGCAGTGGTACTACTATTAACGTAGAGATTAAACTTGCAGTGATCCTTAATTC
CAAGAGATAGAAGGGAAAACTTTTCAAATCTTCTTCCATTTTTATTCTCTTTTTCATGGT
TAGGATTCCAAGCTCTATCCGAGCGCGCCATCATGTGGTCCTAGCAGGCGACAGATACAT
GTCTCCACATGGGCCCCTTCCACTGGATCGGCCCATTTGCAAGGGCACAAGTGCCAACGA
CGAGTTGAGGCTGACAGGTGGACCTCGATGACAAAGAGACCACGGGATTTTTCTTTTTCT
TCTGCCACTACTCCTAGTAGTAGCAGTTGAGTTGTTCGACAGGTTTGGCTCTTTAATTTG
GGAAAGCCACGCATGATAGTGCAGTTTGCAGGATGATGAATCACTTGACCTCTTTTTTTG
GCAGATGAATCAATCTACACTTAAAACTTACAAGATTCTTGAGATTAGGGCAAAACAGAT
CGCGCGGATGCATCTTCACGGCCACAGCAATAAAGCGGGGCCAAATAACTGGGCACCGTC
ATCAATGAGGACACGAAGCATCACGGGTCATCATGGGTCCCATGTGACTATCCTCCCAAA
AGAAAAGGGGCAACTAATTAACCACACTTTAAGGCTTTAATTTGCATTTGCAACCCATCA
ATCACATGCCCTCAACCAATCAACCTCCCTCTACCTGAATCACCACTGGTATTTTTTCTT
CTTTTCTTTTTTCCGATCTAGTAAAAAAAATAGTACTATTTTCTTTGCGGCAGAAAAGAA
AACGAAAAGGAAAAAAAAAACAGGTGGCATGCATGAATTGAGCATGTCGAATGCAGAGGG
GATGGATGGATGGATTGATTGATTGTTATACCTTCTTGACACATTTCTTCTCGCGCACCT
CGTAACGGCTTTTGGTCAAATCCGAGAGCCACATCCCCGGAAAGACGAACTGCAGCCCAC
AAAAGCACAGGTTAGTCATGGATATCAGAAACGTTGCTAGGAGTAGATCCGATCGGATTC
AGCTGGCTGCAGGAGGGCAGGCAGATGCATACTTGTAGCGACTTGTCCACGTTCTTGGCC
CGCTTCTTGGGCCTCTGGGGCAGCTTGGTGCCCTTCATCACCAGGAAGTCGTCCTCCTTC
TCCTTGCGGGACAGCGAGATGTAGATCCGGGGAAGCTCCAACCGCTCCCCGCCAAGCTTC
TCGCCGGCTCCGGCACCGTTGGCGGCGGCCACCAGCGGCGAGTCGTGGTTGCTGTGGTTG
TGGTGGTGGTGGTGGGCGTTCTTGGAATCCATGTGATGATGCTCCACGGCGGGGGGCTTG
TTGTGCGGCGCCTTGTCGGGCGACGACCGCTTGTGCACGCCGCCCGATCGCTCCTCAACG
GACCTGATCGCGCAACCAAAGGAAGAAAACATGGCGTCAATCATGGGATCGGGGTGGTGG
TGGACTGGTGATGATGCGGCGGTGGTTGGAGGGGCTGAGGAGGGGTAAAGGAGAAGAAGG
GTGGGTAGGGTGGTGGATCGGTGGTACTACTACTAGTACTACCAGAGACTCTTTACCACA
GCGAGATGATGCATACAAATATATATGCAAAACCTAGCAAAAGCTACGTACTACTAGAAC
TGCTCTTTTTTTTCCCTTCCCGGGGGCGCTACAACCTACAACTGCTGTTGATGCCCATCC
ATACACATACAGAAAAGAAAAGGAGACCCGAGAGCTGAGCTGAGGAGTATATGAGGGAGA
GATAACCATCTGCCCTACCCTACCGGTGGTGTTCCCTTTCCCTTGATGCTGCGATTCATA
TCATCATATCGTAAGCTGAAATCTACTGGTGGCTAGATCGGCCGAACAATCCACGGAAGC
TGAATTTGCCTCTGGCTAACGAGCGAGCGCCGCTGCTGCCATCAAGGAATTTGAGCAGAT
ATGGATATCTAGTTGGGTCCCCCATGCATCACGCAATGTGTGACAAATACGGGCGCTGCT
GCCTGCTGCCCCCTATGTCACCTTGCGTCCACGGATTAGTCAAGGGACAAGGATGGTAAA
GTTACCACCCGTCCAGATCCAGACACAAGACTTTCCGCAATAATAAAATCACTTTTAAAT
ACCTCGAAACAAATTGGAAAAGATGGAGCGATCCAGATCATCCAGCCATCAAGGCTAAGC
ATAAAAATATTAGTAGTACTGAAAATCAGAAAACCTACTGCTTCAAATTGGAGGGGGAGA
AAAGAAAGGAATCTTTCATCCAACTCCAGCGCCTTGTTGCGGTGCTAAAAGACGGGCGGG
CGGCACAGCTCACCAGCAACCAAAAGAGACCCGAACCCGAACCGCCGAAAACACCAAGCG
AATAAATAACTACCACGATCCCACGACTCCAACAAAGAACAAGACGGACAAGCGCAACCG
GCCCGCTTGCTTTCCGTCTCCCCGGGGGCACAAGCGGAAACGAAAAAAAAAGGTCGCGCT
CGCCGGGTAAAACCGGCGAGAAATACGGGAGGAGCGGGTGGAGCGAGCGAGCTCTCGAAC
GCGAGGCCGTACCTGCTGTGGTGGAGAGGCTGGTGGCTGGCGTCTGCTCCGGCGGCGCGG
GGCGGGAAGGACGACGAGGACCTCAGGTTGGACCCCCGCGTGGTCGTGGCGTGAGGAGGC
GGCATCAGCTTCTCCGCCGGCGCTGGTGCCGACGCGCGCCGCTGGATCTTGCCGCTGCCC
GGGGCCTGCCGACGCTGCGAGGACGGCGACGCCGACGAGGACGCCGCGGAGGAGTCGCGC
CGGCAGCGGGACCGCTTGTTGTGCCCCCACTGCAGCAGCACGTCGCCGCCGACCGCGCCG
GTTCCCGCGCCCGTGGAGCTCGGGGAGGCCGTGTCGGAGGAGTCGGAGGGGTGGTGGTGG
ACGTGGTCCCGCGCCGGGCTACGCACGGCCGACGAAGACGGCGGCTGCGGTGGTGCGCGC
GCCCGCACCGGCGGCTTGGTGTCCGCCTGGGAGGCCGCGAGGTACGAGGCCACTCGGGAA
CTGTCGGTGGCGGCGGCCGGGCCTTCGTCGTCTCTGAAGGATCTCGAGGCCGGCTTGCGT
GCGACGCCGCCGCTGCCGCCACCGTTCGTGAGCGGGAGGCAGTCCGGGCTGAGCCTTTGG
TACCTGCAGCGACGCTGATTAGCGATTTGGCCCGACAAAATGGATCCGCTGCAAAATGTA
AGTAGCAAATCGGTCGCCTTGGAGTGGCTGGAGAAATGGAAAGACGAACACGCCGGATCG
ATCAACCGCGACAAAAATGGAGAAATTCGAGAACAATATGGCAGCAAAATTCAACGGCTT
AGCAGGTAAGATGAAGAAACAACGTAGCAGAATCGGATGGGCGCCGCAAAGAAGACGAAA
ACACTTGGGCCATGAACTATGAACTCCAATCTCCAGATGGAGGATGCAAAATACAGCAGA
AACGGCAAGAAGCTTGGCATCCAGACCGAAGAGCCGGACAACCAGAAAGTATTCATCAGA
GTAGAAGCAGAAGGCTGCGAAACACAGAGATTAAGAAGACGGGATCATCACGAGTCAAAC
GCAACCGCGTAAATTGGCAATACACAGAATCGAAATACCAAAGCACAGATCAACCAAACC
GCAAGGAGAAGAGAAATTTAGACGTCGGAGATGGGAAGCACCGGCGAGATTACAACAACA
AAGTAAACGCACGGAAGGGTGGAAATTTCACAAGGCCGGCCAGTTCCGGCCGGCGGGCGA
ATGGATGGGTGAAATCCATCACCAGCCGAAGGAAAAGAGAAGCCGAAACCAAAAATCAAA
CGCACGCAAGACAGAAACAGCCCACGCGTCGATCTGAACACAAAGAGAGACGGTTGTAAG
GAAGAAGAGCAGGAGAAGAGGGAGAGGGGAGAGAGCACGGAGATCTGCCGGCTACCTCAT
CATGTCCAATGCGGGAACGGCTTTCAGTTTGGATGAGCTCGTCGACGCGGCGTCCCTGCC
AATCGCGTGGACCTCGAGGAGGCCACGCATCAAAATTGGCCTCCGGCCAACCGCTCGAGA
AGGCAGGTTCCTTCCTCCTGCGCTGAGCAATCACTCTCTTCTCCCTCTCCCGTTCGTCTG
CACGGAACGAACAAGAGGCGGACACGAAATTTACAGGAAAAAATTGTGAGAAGAAGAGAC
GAGGAGGGAGGGTGGGAGGGAAGGAGGAGGAGGAAGAGAGCAGCAATGGCGATGGGAGCA
GAGCCGGGGGTCCAAATAGAGGCTTTATCTTTTGCGGCGTCCCCCTTTTGCCCTCGGGTA
GGGCTGCGTATCCACCGTTCTGCCACCGACTCCTGCTGACCAAACTGCCCCCCGCGCGGG
CCGTGGCAGTGTGGTGATTAGTGGAGAATTCATGGGCTTATTTGTTCACGACGGCAGGCC
GGGGAGATCCGTGCGGTCTCCTTCTCTCTTGCCCTTCAAGCCACCGGGGGAGATCTCGTC
GCTAACGGACGTCACCGCAAAGCTAAAATTGAGAAGGAAATTTACTACCACTGCTTGGTC
ATTTGAGCCCCACATGGCAGTGGCTTGCGTTTGCGTTATTCATGATCGCCTCAGGTGTTT
TATATGGACGGTATCCGTGCGGTCTCGTGCCACGTCTGCGGGGAGTGCATCGCCTGGCAT
ATGGTCGCTGACCGGTGGGTCTTCCAGTTGAGCGTGCGCGTTAATCAGGATCAGGTGGCG
CCGGTCTGGTTTTGAACGGACGGATGATATAAGGTGATGGGATCACCCACATGTATGGTG
GTACGACCAATGCGCAGGGGAGCGGGCGGGGGACGTGGGGAGGCAGACGGTTGCGCATCT
CCGTGATCGACACACACCGCCTACGCAACCGAGGAACGGAGCAAAGCAAGCATTGGTTTT
CTTAATTAATGTAATAACCAGCACAATGTTCTTGTGTTGCAATGAAATATATAAATATTG
TAATACACTAGTTCAATGCCCGTGCGTTGCAACGGGTTAACAAAAGATATACAAACACAT
TGGTCAAATGATGGTGTTGATTTGGAATTTTATGTCAAATATGATGGCATGTGGTTTCAA
TTCATGTAGTGAAACAGACTATTTCTTTCGTTTCTTCCCTCTTCAACAACCAATGAAAGT
ACGTCTCCTTGAAGATCACGTCATGATAGCCCCATGAAAGTACTTGATATGTTCCCAGTG
TAAAAGGATAATGAACAATTGCAAGGGTTTCCATCATCAAACTACATCATCAAGTTGATA
TCTGTGCGCCAGCTCGTTCATCATGGCCTC