morexGenes - Barley RNA-seq Database

Contig contig_136087

Source Contig contig_136087

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_136087 (5423 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_136087

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_5272	1	726 bp	MLOC_5272.1	Available	Available	None
MLOC_5271	5	2887 bp	MLOC_5271.1	Available	Available	LOC_Os06g19010.1, FRAME:+1, EVALUE:6e-178, 13106.m02028 protein cadmium tolerance factor, putative, expressed

CDS Structure of MLOC_5272

CDS Structure of MLOC_5271

Contig Sequence (5423 bp)

>contig_136087 5423 assembly3_WGSMorex_rbca.fasta
CCCTTAAAAGTGTCAAAAATGTGCAATTCTCAACCCTTAAAACTGGTTTTTGTTTTAAGG
GTTTGAGGGTTCTACTAGAGATGCTCTTAAGCATTTTGAAGCTGTGGGATCGGAGGAGGC
GATGGCAGTGTGCTCACTCTCACGGTCTCACTCGACCCCCACTAGACATCGCAACTTGCA
CACCTTCTTCTGTTGGGCCGGAGCAGAAGAGGACATTCCTGCCGACGTGGACATAGTAGG
GCTCCGTATAAAATATCACAGTAGGTCCGAACTGTGCGGATATTCAATTTGCCTCTAGAA
AGCACATGCTCCTGCTTGTCAAAATTGGATTATTTTTCTAAAAAATGGATTTTACAAATG
TTAAAAAAATGAAAAAAATATAGATGTATTCAGTATGACTTAACTTAAATGGTACATGCA
AATTTGCACGGGAAATACTTAATCATTTTGACTAGTGCAAAAAAGAAAGTAAAACGACAA
ATGTTACCTCCAAATGCTATAATTAATTTTGTTTTTTTCAATGAGGGAGCACCACTATAT
CATATGGCATACAAATTGGCAAGCCCACTTGTCACACTAATATGAACATATATATAAAAA
AACAGGTTTTTCAAAATTTATTGCTACTTATTTTGATTTTACTGTTTATTAGGGAGCCTA
TGCTTTCGGATTTTTGTCTAAAAAAACCCCTAGCTGAATGTTATTGTTAAAAAAGATCAC
ATCAGTATGAAATATGAGAAAAGACCCTTATTTTTCATTGCGCCACGGGTCTGGGCCCCC
CGCCACCTCGGCGGCCGGCCGGGCAGGTGGCACGTGCCGCCAGCACAGGCGGCCCGCTGC
GCATGCTCTCGTACTGTGCTCTTTTAGATTGAAAATCCATCGGTCGAGGAGATTGTTTGC
ATAGGGTGCTTTCACCTGACACAATTCCATGACGAATTCAGCTGACGTGCTCAACGTGAC
CAGGCATCACGTCACCGCCGGCTCTGTCAGATGCAAACGTTTTTTTTTTCCTCAGAGCCG
CTCCCTCACGATGTTTTGGAATAAGAAGTAGAATTGCTTATTTGCTGCTACCCTAGTTTA
GTTTACTACTAGACCGGAGAAAGACTTGCTCGTTGACTTGCTGCTGGCCTTCCACGATGA
CCTGACTGCGCGCACATCGGGGAGGGTGCACACCGCAGAGGCTCGGCACCTTCCAGCCGC
CGACGATGGGAGTGAGAAGAGGAGGAAAAGCACAGCTGCTCAGAGATTGGAGTGGCTTCG
ACGCAGCTGTGGTGCGGCCGGCAATGGAGCCCGGCCGCGGCTAGAAGAAGCCTTGGCTGC
TCACAGGACCCCGAGTCGTCCGTCTTCACACGCGTCGGAGTTGCTGTAAAAATATATAGG
GCAGTGGCAGTAAAATAGTGGCGCTCCGACCGTCAGGATTTGATTATGCACAGCCGCAGG
GCGCACGGACTGGCCACCTTCCCTCCGGACGACGCGCCGAGTCAAGTCGTCTTATTATCA
CGCAACTCTCTTACCCATCGTCCCACATCTCTGCATCACAGTGTTAATATTAGTAAGAAA
GAGGAGCCACACTTGCTGAGAGCTTGAGATTTGAGAGAGTGGAATGCCCGGCGCCCCTGC
GGCAATGCCAACGGATGAGTCCGACGAGCAGGCAACGGCGTCCGGGCAGCAGCAGCCATG
GGAGTACAGCCTGCGGAAGTACCTCCTGCTGCTGGCCACCCTGGTGGTCACCGTCACGTA
CGCCGCCGGCTTCAACCCGCCGGGGGGCGTCTGGCAGGTCACCCACGACGGCCAACTCGC
CGGCGACCCCATCATCCGCCAAACCAACTACCACCGCTACCTCGCCTTCTTCTACTGCAA
CGCCACCGCCTTCGCCGCCTCCCTCGTCGTCATCGTCCTCATCCTCGTCCTCGCCATCCG
CCACGACAAGAAGGGGAAGGACAGCCGCTGGGTCGTCGTGCCCCTGCGGCTGGTCATGCT
GCTGGACCTGCTCAGCCTCATGGGCGCGTACGGCGCCGGCACCTGCCGGGACAAGATTTC
AACCGTCTACTCCGCGGCGCTGGCGGCCGTCGTCTTCCTCTACATCCTCCTTCTCAAGAC
GATGGACTGCTGGGACAAGACCTCCGACTCCGGCGCCGGCTCCGGCCGCGGGATGCCCGT
CTCCAACGGCAACACTGGAAGCGCAACGCCTATTCCCGATCCTGACTTTGTCACCGGAAC
AATTTCCACCTCCGTTGCCGGCTCCAAAGGCGGGATGCCCATCTCCAACGGCAACACTGG
CTCCAGCGGCGTGACGCCCACTCCTAATCCCGACTCCGACGCCGGCACGATTCCAGCCCC
CATCCTCGGCTCTGACCCCACCGTCGGAGAAGACCAGGAGCGGCTCCGCCACCACAAGGC
CCACAAGAAGCTGAAAGCCGAAGAACGACTCCGCAAGGTCCTGATGCTCCTGGCAACGTT
CGCGGTGAGCATCACGTACGTCGCCGGGCTGAGCACGCCGGGCGGCTTCTGGGACAGCAG
CGAGGGCAGCCACCACCCGGGCGACGCGGTTCTCAAGGACCACCACGGCCCGCGCCTGAC
GGTGTTCCTGCTCTGCAACACCACGGCGTTCGTGGCATCCCTGCTCATCACCATGCTGCT
CATCGTCGACGGCAAGAAGCTCCGCAAGAAGAAGACGGCCCGGTCTCGCATGCTCTACGG
GTGCATCGTCGTCGCCCTGGTCGGTCTCGTCGCCGCATACATCGCCGGCAGCTGCAGGGA
GATCGATACCACCGCCTACGTGGTCAGCCTGGTCGGCGCCGTTCTCACAATGGCACACAT
CATCCTACTCTATGGTATCTACGCTTCTTCTCGTTCCAGTCCAGTGCAACAAACTGGAAA
TGTTCAGAAGATTGTTGATAATGTCAGGTATACATATCATCTTCTTCCTTTCCTTTGTTT
GCAACTGAAATCTCTGTTTTTTTCTCTGCTGCTGAAGTTTGTTTCCTCTGTTTGTAGTTT
CACTGTTTTCTCTGCAAACTGAACTGAACTCTGTTTCTTCTTCTCAGCAGTGGTAGGAAG
GCTCTGGACAAGGCTCGCTCTCTTGTTCTACTGCTCGCCACTCTTGCCGCCGCCATCACC
TACACGGCGGGGTTGGACCCGCCGGGAGGCCTTTGGCAGGACAACAGCAACGGGCACATG
GCCGGTGACCCAATCCTTCTCACCACCAATGCTAGGCGATACAAAGCCTTCTTCTACTGC
AACTCGGTTGCCTTTGTGGCCTCCTTGGTAGCCATCGTCCTAGTCCAGACGGATATTCTG
GTCAGGCACCACGTGCTGGAGGCAGCCATGATACTCGATCTGTTTGGCCTCATCGGCGCC
TATGCCGCCGGGAGCTGCCGGGACGTGAACACCTCCATTTACGCCATAGCTTTGGCAGGC
GCCGTCCTGGTCTATGTGGTGATCCATGTTGTCTTCTTCACGCTGGATCACAAGGACAAG
AAAGACGATGACCAAGAAGATCAGTTGCTGGAGAAGAGGCGCAAACGGTTGCTCCTCTTC
GCGATCTTGGCCGCGACCATTACGTACCAAGCCGGCCTCACCCCTCCTGGCGGCTTCCTG
CTCCAGGATGACAAGCTCGGACACCACGCCGGCGACCCAGTCCTCTTGTACAACTACCCA
CTCCGTTACAAGGCCTTCTTCTACTGCAACTCGGTGAGCTTCATGCTGTCCATCTCCATC
ATCATACTCCTGGTGAACCACAATCTGTACAGGCCAGCCATACGGAGCAATGCGCTATCT
GTTTGCACGGCGGTGGGCTTGTTTTGTTTGATGGGGGCCTATGCCGCCGGAAGCACACAA
CACCTCAAGACATCCATCTACATCTTTGTGCTGGTCGGTGCGGTCCTTCTCGTTGCAGCC
GGGCTCCTGCTGGTATTTTTGCTGAAGAAAAATGGCAGCGATTCAGCAGCGCAACACAGG
AAACAGAATGAAGAAGCGAAGGGGGTAAAAGTAAAGAATGGGGATAAAGAGGCAGAAGAA
CAGAATGGGGATAAAGAACTAAGGAAGAAGGAGGTGGAAGAAAAGAAAGAAGAAAGGAAG
AAGCACGAGAGGCGCAAGTACCTGATGCTGCTAGGCATCTTGGTGGCCAGCGTAGCCTAC
CAGGCCGGCCTGGAACCGCCCGGCGGAGCATGGCAGAGCAATGACAACGGGTATGAGGCG
GGTGACCCGGTGATGCACGATAACAGGAGGCCCCGCTACCTCATCTTCTTCTACAGCAAC
TCCTTTTCCTTCGTGGCTTCCATTGTGGTCATCATGATGTTGCTGCCGCACTGGCTGCCG
AACCAGAAGAAAGAAGAATGGGAAAAATGGTCGCTGAGGGTGATGAACTGGACCATCCTG
CTGGATTTGTTCGCTCTCCTGGTGTCCTACGCAGCCGGCTCCAACAGGGGGTGGAAGACG
TCCGTTTATGTCGTCGCACTCATCTTTGCTGTGCTGGTCTACTTTGCAATCCATATGATG
CTGTCATGTACTGTTTGTAGCCCTAAGAGCCCCGAAAGCAGCTCTGAGGTGTAGCTCTAC
CTCTACTATGTGAGGGCGATTGCTCATCTGAGCTGCCATCTATCTATTTCTTCCTGTCTC
TAGATCTCTAATTCTCTAATCTCTCTGCTCTATCTAGCTCTCCACTTGTTAGATCCCTAG
TCTAATTGATGTAGTCGGATAAACCTTCATCCGAATTGGAGCATGCTGACATTGTTTGTC
GACTCACTGGGCAAGTGTGTGTGTGCCTTAACCCAATGATTACGCATGGTAGGTAGCATT
TCCTTATCCTGCGCACAGTCTCTCTCTGTCTCATAAGGACTTGAGTGGGAAGTGCACGAA
TTTCAGTTGCATTTGCATTCAGGAAACGCAAGCACTTGTTGCTACCGAAACATGCCAGTA
TGTCACAATGTGCGGTCTGAAGTAGTAAGTGTGTGTAATTCTATTAGTGGCCACTGGTCT
TGTCGAGAGGAAAAACATACCTTGAATCCGTGACCTGACTTCGGGGGCGCAGTCTCCCCT
GTGGGCCAATTCGCCGAACATCTGCAGGGCGCCTGATCTCCGCATGCAGGCGCAGGCACC
TGAGCTGCGCGGGCCGCCGCCATCGTTTGTAACGTCGTCGGCCAGGATCAATATGTACTG
ATGGCATCAGAGGTTGGCGCCGTGATCGGAAGCAGTTGTATTTTGTATTTCAGGCTTCGG
TTCTAGCCTAAAAAGCACGGATACGGGGACACGGACACGGCGACACGCATACGGAGACAC
GGGATACGGCATTTTCCAAAAACAGCCCATCGAGGACACGTCAAGTATATATATAAATAA
ATAAATAATGCCATGTAATATAGAGGTAAAAAGGAAAAAAAAATAACAAGAGATCGTCCC
AGTCAACAGTAACTCTCTTAACA